Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1983

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1981 and EX28DRAFT_1982 are separated by 123 nucleotidesEX28DRAFT_1982 and EX28DRAFT_1983 are separated by 19 nucleotidesEX28DRAFT_1983 and EX28DRAFT_1984 overlap by 44 nucleotidesEX28DRAFT_1984 and EX28DRAFT_1985 are separated by 163 nucleotides EX28DRAFT_1981: EX28DRAFT_1981 - Superfamily I DNA and RNA helicases, at 1,981,148 to 1,983,202 _1981 EX28DRAFT_1982: EX28DRAFT_1982 - Predicted membrane protein, at 1,983,326 to 1,983,772 _1982 EX28DRAFT_1983: EX28DRAFT_1983 - TIGR01666 family membrane protein, at 1,983,792 to 1,985,954 _1983 EX28DRAFT_1984: EX28DRAFT_1984 - regulator of competence-specific genes, at 1,985,911 to 1,986,537 _1984 EX28DRAFT_1985: EX28DRAFT_1985 - cell division inhibitor SulA, at 1,986,701 to 1,987,264 _1985 Position (kb) 1983 1984 1985 1986Strain fitness (log2 ratio) -3 -2 -1 0 1at 1983.011 kb on - strandat 1983.091 kb on + strandat 1983.091 kb on + strandat 1983.091 kb on + strandat 1983.096 kb on + strandat 1983.097 kb on - strandat 1983.227 kb on - strandat 1983.227 kb on - strandat 1983.231 kb on + strandat 1983.256 kb on + strandat 1983.641 kb on - strand, within EX28DRAFT_1982at 1983.775 kb on - strandat 1983.792 kb on - strandat 1983.818 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.840 kb on + strandat 1983.841 kb on - strandat 1983.841 kb on - strandat 1983.853 kb on + strandat 1983.857 kb on + strandat 1984.076 kb on + strand, within EX28DRAFT_1983at 1984.098 kb on - strand, within EX28DRAFT_1983at 1984.098 kb on - strand, within EX28DRAFT_1983at 1984.164 kb on + strand, within EX28DRAFT_1983at 1984.164 kb on + strand, within EX28DRAFT_1983at 1984.165 kb on - strand, within EX28DRAFT_1983at 1984.165 kb on - strand, within EX28DRAFT_1983at 1984.165 kb on - strand, within EX28DRAFT_1983at 1984.239 kb on + strand, within EX28DRAFT_1983at 1984.240 kb on - strand, within EX28DRAFT_1983at 1984.240 kb on - strand, within EX28DRAFT_1983at 1984.242 kb on - strand, within EX28DRAFT_1983at 1984.393 kb on - strand, within EX28DRAFT_1983at 1984.505 kb on - strand, within EX28DRAFT_1983at 1984.505 kb on - strand, within EX28DRAFT_1983at 1984.505 kb on - strand, within EX28DRAFT_1983at 1984.510 kb on - strand, within EX28DRAFT_1983at 1984.510 kb on - strand, within EX28DRAFT_1983at 1984.513 kb on - strand, within EX28DRAFT_1983at 1984.677 kb on - strand, within EX28DRAFT_1983at 1984.775 kb on - strand, within EX28DRAFT_1983at 1984.775 kb on - strand, within EX28DRAFT_1983at 1984.916 kb on + strand, within EX28DRAFT_1983at 1985.082 kb on + strand, within EX28DRAFT_1983at 1985.082 kb on + strand, within EX28DRAFT_1983at 1985.083 kb on - strand, within EX28DRAFT_1983at 1985.115 kb on - strand, within EX28DRAFT_1983at 1985.161 kb on - strand, within EX28DRAFT_1983at 1985.161 kb on - strand, within EX28DRAFT_1983at 1985.241 kb on + strand, within EX28DRAFT_1983at 1985.264 kb on + strand, within EX28DRAFT_1983at 1985.288 kb on + strand, within EX28DRAFT_1983at 1985.378 kb on + strand, within EX28DRAFT_1983at 1985.379 kb on - strand, within EX28DRAFT_1983at 1985.449 kb on - strand, within EX28DRAFT_1983at 1985.472 kb on + strand, within EX28DRAFT_1983at 1985.561 kb on + strand, within EX28DRAFT_1983at 1985.562 kb on - strand, within EX28DRAFT_1983at 1985.633 kb on + strand, within EX28DRAFT_1983at 1985.633 kb on + strand, within EX28DRAFT_1983at 1985.634 kb on - strand, within EX28DRAFT_1983at 1985.634 kb on - strand, within EX28DRAFT_1983at 1985.646 kb on + strand, within EX28DRAFT_1983at 1985.649 kb on - strand, within EX28DRAFT_1983at 1985.857 kb on + strandat 1985.952 kb on + strandat 1986.180 kb on + strand, within EX28DRAFT_1984at 1986.181 kb on - strand, within EX28DRAFT_1984at 1986.296 kb on + strand, within EX28DRAFT_1984at 1986.296 kb on + strand, within EX28DRAFT_1984at 1986.296 kb on + strand, within EX28DRAFT_1984at 1986.297 kb on - strand, within EX28DRAFT_1984at 1986.297 kb on - strand, within EX28DRAFT_1984at 1986.362 kb on + strand, within EX28DRAFT_1984at 1986.392 kb on + strand, within EX28DRAFT_1984at 1986.444 kb on + strand, within EX28DRAFT_1984at 1986.447 kb on - strand, within EX28DRAFT_1984at 1986.495 kb on - strandat 1986.522 kb on - strandat 1986.526 kb on + strandat 1986.615 kb on - strandat 1986.700 kb on + strandat 1986.701 kb on - strandat 1986.701 kb on - strandat 1986.701 kb on - strandat 1986.706 kb on + strandat 1986.771 kb on - strand, within EX28DRAFT_1985at 1986.915 kb on + strand, within EX28DRAFT_1985at 1986.916 kb on - strand, within EX28DRAFT_1985

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,983,011 - +0.0
1,983,091 + -0.8
1,983,091 + -0.0
1,983,091 + -0.2
1,983,096 + -2.2
1,983,097 - +0.3
1,983,227 - -0.6
1,983,227 - +0.6
1,983,231 + +0.3
1,983,256 + +0.1
1,983,641 - EX28DRAFT_1982 0.70 -0.1
1,983,775 - -1.3
1,983,792 - -0.1
1,983,818 + +0.0
1,983,840 + +0.3
1,983,840 + -0.1
1,983,840 + +0.1
1,983,840 + -0.0
1,983,840 + -0.8
1,983,841 - +0.1
1,983,841 - -0.1
1,983,853 + -0.1
1,983,857 + +0.4
1,984,076 + EX28DRAFT_1983 0.13 +1.2
1,984,098 - EX28DRAFT_1983 0.14 +0.5
1,984,098 - EX28DRAFT_1983 0.14 -0.4
1,984,164 + EX28DRAFT_1983 0.17 -0.5
1,984,164 + EX28DRAFT_1983 0.17 -0.8
1,984,165 - EX28DRAFT_1983 0.17 -0.5
1,984,165 - EX28DRAFT_1983 0.17 -0.1
1,984,165 - EX28DRAFT_1983 0.17 -0.2
1,984,239 + EX28DRAFT_1983 0.21 -0.2
1,984,240 - EX28DRAFT_1983 0.21 +0.3
1,984,240 - EX28DRAFT_1983 0.21 +0.3
1,984,242 - EX28DRAFT_1983 0.21 -0.6
1,984,393 - EX28DRAFT_1983 0.28 -2.1
1,984,505 - EX28DRAFT_1983 0.33 -0.7
1,984,505 - EX28DRAFT_1983 0.33 -1.3
1,984,505 - EX28DRAFT_1983 0.33 -0.3
1,984,510 - EX28DRAFT_1983 0.33 +0.8
1,984,510 - EX28DRAFT_1983 0.33 -0.8
1,984,513 - EX28DRAFT_1983 0.33 -0.2
1,984,677 - EX28DRAFT_1983 0.41 +0.4
1,984,775 - EX28DRAFT_1983 0.45 -0.8
1,984,775 - EX28DRAFT_1983 0.45 +0.4
1,984,916 + EX28DRAFT_1983 0.52 +0.8
1,985,082 + EX28DRAFT_1983 0.60 +0.4
1,985,082 + EX28DRAFT_1983 0.60 +0.9
1,985,083 - EX28DRAFT_1983 0.60 +0.5
1,985,115 - EX28DRAFT_1983 0.61 +0.7
1,985,161 - EX28DRAFT_1983 0.63 -0.0
1,985,161 - EX28DRAFT_1983 0.63 -1.1
1,985,241 + EX28DRAFT_1983 0.67 +0.0
1,985,264 + EX28DRAFT_1983 0.68 -0.0
1,985,288 + EX28DRAFT_1983 0.69 -0.5
1,985,378 + EX28DRAFT_1983 0.73 +0.6
1,985,379 - EX28DRAFT_1983 0.73 -0.1
1,985,449 - EX28DRAFT_1983 0.77 -0.3
1,985,472 + EX28DRAFT_1983 0.78 +0.2
1,985,561 + EX28DRAFT_1983 0.82 -0.5
1,985,562 - EX28DRAFT_1983 0.82 -0.5
1,985,633 + EX28DRAFT_1983 0.85 +1.1
1,985,633 + EX28DRAFT_1983 0.85 -0.7
1,985,634 - EX28DRAFT_1983 0.85 -1.6
1,985,634 - EX28DRAFT_1983 0.85 -0.2
1,985,646 + EX28DRAFT_1983 0.86 -1.2
1,985,649 - EX28DRAFT_1983 0.86 -2.0
1,985,857 + -0.1
1,985,952 + +0.3
1,986,180 + EX28DRAFT_1984 0.43 -0.7
1,986,181 - EX28DRAFT_1984 0.43 -0.3
1,986,296 + EX28DRAFT_1984 0.61 +0.1
1,986,296 + EX28DRAFT_1984 0.61 +1.0
1,986,296 + EX28DRAFT_1984 0.61 +0.5
1,986,297 - EX28DRAFT_1984 0.62 +0.1
1,986,297 - EX28DRAFT_1984 0.62 +0.3
1,986,362 + EX28DRAFT_1984 0.72 -0.3
1,986,392 + EX28DRAFT_1984 0.77 +0.1
1,986,444 + EX28DRAFT_1984 0.85 -0.1
1,986,447 - EX28DRAFT_1984 0.85 -1.2
1,986,495 - -0.3
1,986,522 - +0.1
1,986,526 + -2.8
1,986,615 - -1.8
1,986,700 + -0.5
1,986,701 - +0.0
1,986,701 - +0.7
1,986,701 - -0.8
1,986,706 + +0.2
1,986,771 - EX28DRAFT_1985 0.12 +0.2
1,986,915 + EX28DRAFT_1985 0.38 -0.3
1,986,916 - EX28DRAFT_1985 0.38 -1.0

Or see this region's nucleotide sequence