Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1952

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1951 and EX28DRAFT_1952 are separated by 17 nucleotidesEX28DRAFT_1952 and EX28DRAFT_1953 are separated by 11 nucleotidesEX28DRAFT_1953 and EX28DRAFT_1954 are separated by 43 nucleotides EX28DRAFT_1951: EX28DRAFT_1951 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 1,955,902 to 1,957,056 _1951 EX28DRAFT_1952: EX28DRAFT_1952 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 1,957,074 to 1,958,108 _1952 EX28DRAFT_1953: EX28DRAFT_1953 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 1,958,120 to 1,959,055 _1953 EX28DRAFT_1954: EX28DRAFT_1954 - tRNA, at 1,959,099 to 1,959,186 _1954 Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -2 -1 0 1 2at 1956.119 kb on - strand, within EX28DRAFT_1951at 1956.284 kb on + strand, within EX28DRAFT_1951at 1956.548 kb on - strand, within EX28DRAFT_1951at 1956.925 kb on - strand, within EX28DRAFT_1951at 1956.976 kb on + strandat 1957.317 kb on - strand, within EX28DRAFT_1952at 1957.367 kb on + strand, within EX28DRAFT_1952at 1957.419 kb on + strand, within EX28DRAFT_1952at 1957.419 kb on + strand, within EX28DRAFT_1952at 1957.623 kb on - strand, within EX28DRAFT_1952at 1957.623 kb on - strand, within EX28DRAFT_1952at 1957.719 kb on + strand, within EX28DRAFT_1952at 1957.916 kb on + strand, within EX28DRAFT_1952at 1957.933 kb on + strand, within EX28DRAFT_1952at 1957.933 kb on + strand, within EX28DRAFT_1952at 1957.934 kb on - strand, within EX28DRAFT_1952at 1958.104 kb on + strandat 1958.104 kb on + strandat 1958.105 kb on - strandat 1958.162 kb on - strandat 1958.202 kb on + strandat 1958.300 kb on + strand, within EX28DRAFT_1953at 1958.300 kb on + strand, within EX28DRAFT_1953at 1958.300 kb on + strand, within EX28DRAFT_1953at 1958.301 kb on - strand, within EX28DRAFT_1953at 1958.301 kb on - strand, within EX28DRAFT_1953at 1958.306 kb on - strand, within EX28DRAFT_1953at 1958.349 kb on - strand, within EX28DRAFT_1953at 1958.471 kb on + strand, within EX28DRAFT_1953at 1958.512 kb on + strand, within EX28DRAFT_1953at 1958.522 kb on + strand, within EX28DRAFT_1953at 1958.522 kb on + strand, within EX28DRAFT_1953at 1958.523 kb on - strand, within EX28DRAFT_1953at 1958.525 kb on + strand, within EX28DRAFT_1953at 1958.526 kb on - strand, within EX28DRAFT_1953at 1958.526 kb on - strand, within EX28DRAFT_1953at 1958.526 kb on - strand, within EX28DRAFT_1953at 1958.859 kb on + strand, within EX28DRAFT_1953at 1958.863 kb on - strand, within EX28DRAFT_1953

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,956,119 - EX28DRAFT_1951 0.19 +0.4
1,956,284 + EX28DRAFT_1951 0.33 +0.2
1,956,548 - EX28DRAFT_1951 0.56 +0.5
1,956,925 - EX28DRAFT_1951 0.89 +0.3
1,956,976 + +0.0
1,957,317 - EX28DRAFT_1952 0.23 -1.9
1,957,367 + EX28DRAFT_1952 0.28 -0.2
1,957,419 + EX28DRAFT_1952 0.33 -0.1
1,957,419 + EX28DRAFT_1952 0.33 -0.1
1,957,623 - EX28DRAFT_1952 0.53 +0.2
1,957,623 - EX28DRAFT_1952 0.53 +0.0
1,957,719 + EX28DRAFT_1952 0.62 -0.9
1,957,916 + EX28DRAFT_1952 0.81 +0.2
1,957,933 + EX28DRAFT_1952 0.83 -1.0
1,957,933 + EX28DRAFT_1952 0.83 -0.1
1,957,934 - EX28DRAFT_1952 0.83 +0.3
1,958,104 + +0.0
1,958,104 + -0.8
1,958,105 - +1.4
1,958,162 - -0.5
1,958,202 + +0.9
1,958,300 + EX28DRAFT_1953 0.19 +0.7
1,958,300 + EX28DRAFT_1953 0.19 -0.9
1,958,300 + EX28DRAFT_1953 0.19 +0.1
1,958,301 - EX28DRAFT_1953 0.19 +0.2
1,958,301 - EX28DRAFT_1953 0.19 +0.1
1,958,306 - EX28DRAFT_1953 0.20 -0.0
1,958,349 - EX28DRAFT_1953 0.24 +0.0
1,958,471 + EX28DRAFT_1953 0.38 +0.2
1,958,512 + EX28DRAFT_1953 0.42 -0.1
1,958,522 + EX28DRAFT_1953 0.43 -0.0
1,958,522 + EX28DRAFT_1953 0.43 +1.8
1,958,523 - EX28DRAFT_1953 0.43 +0.8
1,958,525 + EX28DRAFT_1953 0.43 +0.1
1,958,526 - EX28DRAFT_1953 0.43 -0.1
1,958,526 - EX28DRAFT_1953 0.43 -0.4
1,958,526 - EX28DRAFT_1953 0.43 -0.1
1,958,859 + EX28DRAFT_1953 0.79 -0.1
1,958,863 - EX28DRAFT_1953 0.79 +0.4

Or see this region's nucleotide sequence