Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1945 and EX28DRAFT_1946 overlap by 1 nucleotides EX28DRAFT_1946 and EX28DRAFT_1947 are separated by 144 nucleotides EX28DRAFT_1947 and EX28DRAFT_1948 are separated by 102 nucleotides
EX28DRAFT_1945: EX28DRAFT_1945 - Hydantoin racemase, at 1,950,343 to 1,951,086
_1945
EX28DRAFT_1946: EX28DRAFT_1946 - Transcriptional regulators, at 1,951,086 to 1,951,802
_1946
EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443
_1947
EX28DRAFT_1948: EX28DRAFT_1948 - guanine deaminase (EC 3.5.4.3), at 1,953,546 to 1,954,862
_1948
Position (kb) 1951
1952
1953
1954 Strain fitness (log2 ratio) -1
0
1
2 at 1951.069 kb on + strand at 1951.070 kb on - strand at 1951.070 kb on - strand at 1951.071 kb on + strand at 1951.072 kb on - strand at 1951.170 kb on - strand, within EX28DRAFT_1946 at 1951.414 kb on + strand, within EX28DRAFT_1946 at 1951.791 kb on + strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.792 kb on - strand at 1951.907 kb on - strand at 1952.062 kb on - strand at 1952.406 kb on - strand, within EX28DRAFT_1947 at 1952.577 kb on + strand, within EX28DRAFT_1947 at 1952.578 kb on - strand, within EX28DRAFT_1947 at 1952.682 kb on + strand, within EX28DRAFT_1947 at 1952.683 kb on - strand, within EX28DRAFT_1947 at 1952.982 kb on - strand, within EX28DRAFT_1947 at 1953.154 kb on - strand, within EX28DRAFT_1947 at 1953.161 kb on + strand, within EX28DRAFT_1947 at 1953.161 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.216 kb on + strand, within EX28DRAFT_1947 at 1953.290 kb on + strand, within EX28DRAFT_1947 at 1953.291 kb on - strand, within EX28DRAFT_1947 at 1953.363 kb on + strand at 1953.585 kb on - strand at 1953.657 kb on - strand at 1953.658 kb on + strand at 1953.659 kb on - strand at 1953.708 kb on + strand, within EX28DRAFT_1948 at 1953.846 kb on + strand, within EX28DRAFT_1948 at 1953.846 kb on + strand, within EX28DRAFT_1948 at 1953.847 kb on - strand, within EX28DRAFT_1948
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,951,069 + +0.1 1,951,070 - +0.2 1,951,070 - +1.0 1,951,071 + +0.4 1,951,072 - +0.4 1,951,170 - EX28DRAFT_1946 0.12 -0.9 1,951,414 + EX28DRAFT_1946 0.46 +0.5 1,951,791 + +0.1 1,951,792 - -0.2 1,951,792 - +0.6 1,951,792 - +0.3 1,951,907 - -0.5 1,952,062 - +0.1 1,952,406 - EX28DRAFT_1947 0.31 +0.2 1,952,577 + EX28DRAFT_1947 0.42 +0.8 1,952,578 - EX28DRAFT_1947 0.42 +0.8 1,952,682 + EX28DRAFT_1947 0.49 -0.4 1,952,683 - EX28DRAFT_1947 0.49 +0.1 1,952,982 - EX28DRAFT_1947 0.69 +0.3 1,953,154 - EX28DRAFT_1947 0.81 -0.2 1,953,161 + EX28DRAFT_1947 0.81 -0.0 1,953,161 + EX28DRAFT_1947 0.81 -0.3 1,953,216 + EX28DRAFT_1947 0.85 +0.3 1,953,216 + EX28DRAFT_1947 0.85 +0.6 1,953,216 + EX28DRAFT_1947 0.85 +2.5 1,953,216 + EX28DRAFT_1947 0.85 +0.9 1,953,216 + EX28DRAFT_1947 0.85 -0.1 1,953,216 + EX28DRAFT_1947 0.85 -0.4 1,953,290 + EX28DRAFT_1947 0.90 -0.4 1,953,291 - EX28DRAFT_1947 0.90 -0.2 1,953,363 + +1.0 1,953,585 - -0.1 1,953,657 - -0.3 1,953,658 + +0.3 1,953,659 - -1.7 1,953,708 + EX28DRAFT_1948 0.12 +0.0 1,953,846 + EX28DRAFT_1948 0.23 -0.3 1,953,846 + EX28DRAFT_1948 0.23 +0.4 1,953,847 - EX28DRAFT_1948 0.23 +0.4
Or see this region's nucleotide sequence