Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1777 and EX28DRAFT_1778 are separated by 98 nucleotides EX28DRAFT_1778 and EX28DRAFT_1779 are separated by 267 nucleotides EX28DRAFT_1779 and EX28DRAFT_1780 overlap by 17 nucleotides EX28DRAFT_1780 and EX28DRAFT_1781 are separated by 99 nucleotides
EX28DRAFT_1777: EX28DRAFT_1777 - Uncharacterized conserved protein, at 1,793,594 to 1,794,895
_1777
EX28DRAFT_1778: EX28DRAFT_1778 - Uncharacterized conserved protein, at 1,794,994 to 1,795,494
_1778
EX28DRAFT_1779: EX28DRAFT_1779 - Predicted membrane protein, at 1,795,762 to 1,796,208
_1779
EX28DRAFT_1780: EX28DRAFT_1780 - AraC-type DNA-binding domain-containing proteins, at 1,796,192 to 1,796,983
_1780
EX28DRAFT_1781: EX28DRAFT_1781 - cyanate transporter, at 1,797,083 to 1,798,270
_1781
Position (kb)
1795
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1794.776 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.839 kb on - strand at 1794.842 kb on + strand at 1794.952 kb on - strand at 1794.957 kb on - strand at 1794.957 kb on - strand at 1794.968 kb on + strand at 1794.968 kb on + strand at 1794.969 kb on - strand at 1794.977 kb on - strand at 1794.977 kb on - strand at 1795.038 kb on + strand at 1795.039 kb on - strand at 1795.447 kb on + strand at 1795.584 kb on - strand at 1795.674 kb on + strand at 1795.685 kb on + strand at 1795.686 kb on - strand at 1795.730 kb on - strand at 1795.742 kb on + strand at 1795.762 kb on - strand at 1795.821 kb on + strand, within EX28DRAFT_1779 at 1795.857 kb on + strand, within EX28DRAFT_1779 at 1795.858 kb on - strand, within EX28DRAFT_1779 at 1795.881 kb on + strand, within EX28DRAFT_1779 at 1796.003 kb on + strand, within EX28DRAFT_1779 at 1796.206 kb on + strand at 1796.207 kb on - strand at 1796.222 kb on - strand at 1796.223 kb on + strand at 1796.223 kb on + strand at 1796.224 kb on - strand at 1796.267 kb on - strand at 1796.278 kb on + strand, within EX28DRAFT_1780 at 1796.278 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.513 kb on - strand, within EX28DRAFT_1780 at 1796.890 kb on + strand, within EX28DRAFT_1780 at 1796.892 kb on + strand, within EX28DRAFT_1780 at 1796.892 kb on + strand, within EX28DRAFT_1780 at 1796.893 kb on - strand, within EX28DRAFT_1780 at 1796.893 kb on - strand, within EX28DRAFT_1780 at 1796.959 kb on - strand at 1797.081 kb on + strand at 1797.081 kb on + strand at 1797.082 kb on - strand at 1797.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,794,776 + -0.5 1,794,838 + -0.3 1,794,838 + +1.0 1,794,838 + -0.2 1,794,839 - -0.6 1,794,842 + -0.2 1,794,952 - +0.3 1,794,957 - -0.3 1,794,957 - +2.3 1,794,968 + -0.5 1,794,968 + +1.1 1,794,969 - +0.1 1,794,977 - +0.6 1,794,977 - +0.0 1,795,038 + -0.1 1,795,039 - -0.1 1,795,447 + -0.0 1,795,584 - +1.1 1,795,674 + +0.4 1,795,685 + +1.2 1,795,686 - +0.1 1,795,730 - +0.6 1,795,742 + +0.5 1,795,762 - -1.1 1,795,821 + EX28DRAFT_1779 0.13 -0.4 1,795,857 + EX28DRAFT_1779 0.21 -0.2 1,795,858 - EX28DRAFT_1779 0.21 -0.6 1,795,881 + EX28DRAFT_1779 0.27 -0.3 1,796,003 + EX28DRAFT_1779 0.54 -0.4 1,796,206 + -0.4 1,796,207 - -0.1 1,796,222 - -0.1 1,796,223 + -2.6 1,796,223 + +0.3 1,796,224 - -0.1 1,796,267 - -0.2 1,796,278 + EX28DRAFT_1780 0.11 -0.2 1,796,278 + EX28DRAFT_1780 0.11 -0.5 1,796,339 + EX28DRAFT_1780 0.19 -1.3 1,796,339 + EX28DRAFT_1780 0.19 -1.6 1,796,339 + EX28DRAFT_1780 0.19 +0.5 1,796,513 - EX28DRAFT_1780 0.41 -0.0 1,796,890 + EX28DRAFT_1780 0.88 +0.8 1,796,892 + EX28DRAFT_1780 0.88 -1.2 1,796,892 + EX28DRAFT_1780 0.88 -0.0 1,796,893 - EX28DRAFT_1780 0.89 +0.2 1,796,893 - EX28DRAFT_1780 0.89 +0.1 1,796,959 - -0.8 1,797,081 + -0.4 1,797,081 + -0.6 1,797,082 - -0.3 1,797,088 + -0.6
Or see this region's nucleotide sequence