Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1765 and EX28DRAFT_1766 are separated by 116 nucleotides EX28DRAFT_1766 and EX28DRAFT_1767 are separated by 167 nucleotides EX28DRAFT_1767 and EX28DRAFT_1768 are separated by 63 nucleotides
EX28DRAFT_1765: EX28DRAFT_1765 - selenophosphate synthase (EC 2.7.9.3), at 1,780,365 to 1,781,408
_1765
EX28DRAFT_1766: EX28DRAFT_1766 - Nitroreductase, at 1,781,525 to 1,782,076
_1766
EX28DRAFT_1767: EX28DRAFT_1767 - signal peptide peptidase SppA, 67K type, at 1,782,244 to 1,784,100
_1767
EX28DRAFT_1768: EX28DRAFT_1768 - L-asparaginase, type I, at 1,784,164 to 1,785,180
_1768
Position (kb)
1782
1783
1784
1785 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1781.377 kb on + strand at 1781.441 kb on + strand at 1781.463 kb on + strand at 1781.464 kb on - strand at 1781.464 kb on - strand at 1781.467 kb on + strand at 1781.468 kb on - strand at 1781.468 kb on - strand at 1781.468 kb on - strand at 1781.468 kb on - strand at 1781.582 kb on - strand, within EX28DRAFT_1766 at 1781.620 kb on + strand, within EX28DRAFT_1766 at 1781.930 kb on - strand, within EX28DRAFT_1766 at 1782.180 kb on - strand at 1782.196 kb on - strand at 1782.241 kb on + strand at 1782.241 kb on + strand at 1782.241 kb on + strand at 1782.242 kb on - strand at 1782.279 kb on + strand at 1782.376 kb on - strand at 1782.722 kb on - strand, within EX28DRAFT_1767 at 1782.805 kb on + strand, within EX28DRAFT_1767 at 1782.805 kb on + strand, within EX28DRAFT_1767 at 1782.808 kb on + strand, within EX28DRAFT_1767 at 1782.866 kb on - strand, within EX28DRAFT_1767 at 1782.867 kb on + strand, within EX28DRAFT_1767 at 1782.867 kb on + strand, within EX28DRAFT_1767 at 1782.868 kb on - strand, within EX28DRAFT_1767 at 1782.900 kb on + strand, within EX28DRAFT_1767 at 1782.958 kb on + strand, within EX28DRAFT_1767 at 1782.990 kb on + strand, within EX28DRAFT_1767 at 1783.042 kb on - strand, within EX28DRAFT_1767 at 1783.158 kb on + strand, within EX28DRAFT_1767 at 1783.183 kb on + strand, within EX28DRAFT_1767 at 1783.183 kb on + strand, within EX28DRAFT_1767 at 1783.183 kb on + strand, within EX28DRAFT_1767 at 1783.183 kb on + strand, within EX28DRAFT_1767 at 1783.184 kb on - strand, within EX28DRAFT_1767 at 1783.184 kb on - strand, within EX28DRAFT_1767 at 1783.189 kb on + strand, within EX28DRAFT_1767 at 1783.501 kb on + strand, within EX28DRAFT_1767 at 1783.501 kb on + strand, within EX28DRAFT_1767 at 1783.502 kb on - strand, within EX28DRAFT_1767 at 1783.696 kb on + strand, within EX28DRAFT_1767 at 1783.697 kb on - strand, within EX28DRAFT_1767 at 1783.698 kb on + strand, within EX28DRAFT_1767 at 1783.708 kb on - strand, within EX28DRAFT_1767 at 1783.888 kb on + strand, within EX28DRAFT_1767 at 1783.891 kb on + strand, within EX28DRAFT_1767 at 1783.979 kb on - strand at 1783.979 kb on - strand at 1784.186 kb on + strand at 1784.233 kb on + strand at 1784.233 kb on + strand at 1784.234 kb on - strand at 1784.235 kb on + strand at 1784.389 kb on - strand, within EX28DRAFT_1768 at 1784.573 kb on - strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.811 kb on + strand, within EX28DRAFT_1768 at 1784.815 kb on + strand, within EX28DRAFT_1768 at 1784.845 kb on - strand, within EX28DRAFT_1768 at 1784.898 kb on + strand, within EX28DRAFT_1768 at 1784.898 kb on + strand, within EX28DRAFT_1768 at 1784.982 kb on + strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768 at 1784.983 kb on - strand, within EX28DRAFT_1768
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,781,377 + +0.8 1,781,441 + -1.3 1,781,463 + -0.2 1,781,464 - -0.5 1,781,464 - -1.7 1,781,467 + -0.7 1,781,468 - -0.1 1,781,468 - +0.9 1,781,468 - -0.6 1,781,468 - -0.2 1,781,582 - EX28DRAFT_1766 0.10 -0.1 1,781,620 + EX28DRAFT_1766 0.17 -1.1 1,781,930 - EX28DRAFT_1766 0.73 -0.2 1,782,180 - +1.0 1,782,196 - -0.1 1,782,241 + +0.4 1,782,241 + +0.3 1,782,241 + -0.1 1,782,242 - +0.7 1,782,279 + -0.1 1,782,376 - -0.4 1,782,722 - EX28DRAFT_1767 0.26 +0.6 1,782,805 + EX28DRAFT_1767 0.30 +0.0 1,782,805 + EX28DRAFT_1767 0.30 -0.0 1,782,808 + EX28DRAFT_1767 0.30 +0.8 1,782,866 - EX28DRAFT_1767 0.33 -0.6 1,782,867 + EX28DRAFT_1767 0.34 -0.7 1,782,867 + EX28DRAFT_1767 0.34 +0.2 1,782,868 - EX28DRAFT_1767 0.34 -0.3 1,782,900 + EX28DRAFT_1767 0.35 +0.3 1,782,958 + EX28DRAFT_1767 0.38 -0.6 1,782,990 + EX28DRAFT_1767 0.40 +0.2 1,783,042 - EX28DRAFT_1767 0.43 +0.2 1,783,158 + EX28DRAFT_1767 0.49 -0.2 1,783,183 + EX28DRAFT_1767 0.51 +0.5 1,783,183 + EX28DRAFT_1767 0.51 +0.0 1,783,183 + EX28DRAFT_1767 0.51 -0.1 1,783,183 + EX28DRAFT_1767 0.51 +0.7 1,783,184 - EX28DRAFT_1767 0.51 -0.2 1,783,184 - EX28DRAFT_1767 0.51 -0.1 1,783,189 + EX28DRAFT_1767 0.51 +0.1 1,783,501 + EX28DRAFT_1767 0.68 +0.2 1,783,501 + EX28DRAFT_1767 0.68 +0.5 1,783,502 - EX28DRAFT_1767 0.68 +2.0 1,783,696 + EX28DRAFT_1767 0.78 +0.7 1,783,697 - EX28DRAFT_1767 0.78 +1.0 1,783,698 + EX28DRAFT_1767 0.78 -0.2 1,783,708 - EX28DRAFT_1767 0.79 -0.1 1,783,888 + EX28DRAFT_1767 0.89 +0.2 1,783,891 + EX28DRAFT_1767 0.89 +0.6 1,783,979 - +0.2 1,783,979 - -0.7 1,784,186 + +0.2 1,784,233 + -0.0 1,784,233 + +0.1 1,784,234 - +0.1 1,784,235 + -0.3 1,784,389 - EX28DRAFT_1768 0.22 +0.5 1,784,573 - EX28DRAFT_1768 0.40 +0.4 1,784,811 + EX28DRAFT_1768 0.64 +0.1 1,784,811 + EX28DRAFT_1768 0.64 -0.3 1,784,811 + EX28DRAFT_1768 0.64 -0.0 1,784,811 + EX28DRAFT_1768 0.64 +0.3 1,784,811 + EX28DRAFT_1768 0.64 +0.4 1,784,815 + EX28DRAFT_1768 0.64 -0.6 1,784,845 - EX28DRAFT_1768 0.67 +0.5 1,784,898 + EX28DRAFT_1768 0.72 -0.3 1,784,898 + EX28DRAFT_1768 0.72 -0.5 1,784,982 + EX28DRAFT_1768 0.80 +0.4 1,784,983 - EX28DRAFT_1768 0.81 +3.5 1,784,983 - EX28DRAFT_1768 0.81 +0.8 1,784,983 - EX28DRAFT_1768 0.81 +1.2
Or see this region's nucleotide sequence