Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1673 and EX28DRAFT_1674 are separated by 110 nucleotides EX28DRAFT_1674 and EX28DRAFT_1675 are separated by 27 nucleotides EX28DRAFT_1675 and EX28DRAFT_1676 overlap by 8 nucleotides
EX28DRAFT_1673: EX28DRAFT_1673 - Protein of unknown function (DUF2767), at 1,685,503 to 1,685,712
_1673
EX28DRAFT_1674: EX28DRAFT_1674 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 1,685,823 to 1,686,635
_1674
EX28DRAFT_1675: EX28DRAFT_1675 - ABC-type metal ion transport system, permease component, at 1,686,663 to 1,687,331
_1675
EX28DRAFT_1676: EX28DRAFT_1676 - ABC-type metal ion transport system, ATPase component, at 1,687,324 to 1,688,346
_1676
Position (kb)
1686
1687
1688 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1685.682 kb on - strand, within EX28DRAFT_1673 at 1685.734 kb on + strand at 1685.748 kb on - strand at 1685.748 kb on - strand at 1685.854 kb on + strand at 1685.855 kb on - strand at 1686.031 kb on + strand, within EX28DRAFT_1674 at 1686.074 kb on - strand, within EX28DRAFT_1674 at 1686.301 kb on + strand, within EX28DRAFT_1674 at 1686.301 kb on + strand, within EX28DRAFT_1674 at 1686.349 kb on + strand, within EX28DRAFT_1674 at 1686.374 kb on + strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.375 kb on - strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.378 kb on + strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.379 kb on - strand, within EX28DRAFT_1674 at 1686.392 kb on - strand, within EX28DRAFT_1674 at 1686.409 kb on + strand, within EX28DRAFT_1674 at 1686.458 kb on - strand, within EX28DRAFT_1674 at 1686.473 kb on + strand, within EX28DRAFT_1674 at 1686.473 kb on + strand, within EX28DRAFT_1674 at 1686.542 kb on + strand, within EX28DRAFT_1674 at 1686.655 kb on - strand at 1686.658 kb on - strand at 1686.664 kb on + strand at 1686.665 kb on - strand at 1686.675 kb on + strand at 1686.686 kb on + strand at 1686.686 kb on + strand at 1686.687 kb on - strand at 1686.866 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.957 kb on + strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1686.958 kb on - strand, within EX28DRAFT_1675 at 1687.006 kb on + strand, within EX28DRAFT_1675 at 1687.007 kb on - strand, within EX28DRAFT_1675 at 1687.264 kb on + strand, within EX28DRAFT_1675 at 1687.264 kb on + strand, within EX28DRAFT_1675 at 1687.336 kb on - strand at 1687.414 kb on + strand at 1687.415 kb on - strand at 1688.142 kb on + strand, within EX28DRAFT_1676 at 1688.238 kb on + strand, within EX28DRAFT_1676 at 1688.328 kb on + strand at 1688.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,685,682 - EX28DRAFT_1673 0.85 -0.5 1,685,734 + -0.1 1,685,748 - -0.5 1,685,748 - +0.2 1,685,854 + +0.8 1,685,855 - +0.4 1,686,031 + EX28DRAFT_1674 0.26 +1.8 1,686,074 - EX28DRAFT_1674 0.31 +0.3 1,686,301 + EX28DRAFT_1674 0.59 +0.4 1,686,301 + EX28DRAFT_1674 0.59 +0.3 1,686,349 + EX28DRAFT_1674 0.65 +0.0 1,686,374 + EX28DRAFT_1674 0.68 -0.2 1,686,375 - EX28DRAFT_1674 0.68 +0.3 1,686,375 - EX28DRAFT_1674 0.68 -0.2 1,686,375 - EX28DRAFT_1674 0.68 -0.4 1,686,378 + EX28DRAFT_1674 0.68 -0.9 1,686,378 + EX28DRAFT_1674 0.68 -1.7 1,686,378 + EX28DRAFT_1674 0.68 +0.3 1,686,378 + EX28DRAFT_1674 0.68 -0.2 1,686,378 + EX28DRAFT_1674 0.68 +3.1 1,686,379 - EX28DRAFT_1674 0.68 -1.1 1,686,379 - EX28DRAFT_1674 0.68 +0.5 1,686,379 - EX28DRAFT_1674 0.68 +0.6 1,686,379 - EX28DRAFT_1674 0.68 -0.1 1,686,392 - EX28DRAFT_1674 0.70 +0.3 1,686,409 + EX28DRAFT_1674 0.72 -0.0 1,686,458 - EX28DRAFT_1674 0.78 -3.5 1,686,473 + EX28DRAFT_1674 0.80 -0.5 1,686,473 + EX28DRAFT_1674 0.80 -1.0 1,686,542 + EX28DRAFT_1674 0.88 +0.2 1,686,655 - -0.0 1,686,658 - -0.1 1,686,664 + +0.5 1,686,665 - +1.0 1,686,675 + -1.4 1,686,686 + -0.3 1,686,686 + -0.2 1,686,687 - -0.1 1,686,866 + EX28DRAFT_1675 0.30 +0.5 1,686,957 + EX28DRAFT_1675 0.44 +0.8 1,686,957 + EX28DRAFT_1675 0.44 +1.0 1,686,957 + EX28DRAFT_1675 0.44 -0.0 1,686,957 + EX28DRAFT_1675 0.44 +0.5 1,686,958 - EX28DRAFT_1675 0.44 -1.5 1,686,958 - EX28DRAFT_1675 0.44 -0.8 1,686,958 - EX28DRAFT_1675 0.44 -0.3 1,686,958 - EX28DRAFT_1675 0.44 +0.8 1,687,006 + EX28DRAFT_1675 0.51 -0.8 1,687,007 - EX28DRAFT_1675 0.51 +0.1 1,687,264 + EX28DRAFT_1675 0.90 +0.2 1,687,264 + EX28DRAFT_1675 0.90 +0.4 1,687,336 - -0.3 1,687,414 + +0.4 1,687,415 - -0.7 1,688,142 + EX28DRAFT_1676 0.80 +0.3 1,688,238 + EX28DRAFT_1676 0.89 +0.1 1,688,328 + +0.2 1,688,329 - -0.6
Or see this region's nucleotide sequence