Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1615 and EX28DRAFT_1616 are separated by 177 nucleotides EX28DRAFT_1616 and EX28DRAFT_1617 are separated by 48 nucleotides
EX28DRAFT_1615: EX28DRAFT_1615 - transcriptional regulator, LacI family, at 1,633,127 to 1,634,155
_1615
EX28DRAFT_1616: EX28DRAFT_1616 - PTS system, maltose and glucose-specific subfamily, IIC component, at 1,634,333 to 1,635,925
_1616
EX28DRAFT_1617: EX28DRAFT_1617 - putative C-S lyase, at 1,635,974 to 1,637,146
_1617
Position (kb)
1634
1635
1636 Strain fitness (log2 ratio)
-1
0
1
2 at 1633.405 kb on + strand, within EX28DRAFT_1615 at 1633.407 kb on + strand, within EX28DRAFT_1615 at 1633.529 kb on - strand, within EX28DRAFT_1615 at 1633.603 kb on + strand, within EX28DRAFT_1615 at 1633.604 kb on - strand, within EX28DRAFT_1615 at 1633.624 kb on + strand, within EX28DRAFT_1615 at 1633.625 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.920 kb on + strand, within EX28DRAFT_1615 at 1633.947 kb on - strand, within EX28DRAFT_1615 at 1633.947 kb on - strand, within EX28DRAFT_1615 at 1634.214 kb on + strand at 1634.312 kb on + strand at 1634.358 kb on + strand at 1634.398 kb on + strand at 1634.399 kb on - strand at 1634.465 kb on - strand at 1634.533 kb on + strand, within EX28DRAFT_1616 at 1634.578 kb on + strand, within EX28DRAFT_1616 at 1634.661 kb on + strand, within EX28DRAFT_1616 at 1634.762 kb on - strand, within EX28DRAFT_1616 at 1634.762 kb on - strand, within EX28DRAFT_1616 at 1635.055 kb on + strand, within EX28DRAFT_1616 at 1635.056 kb on - strand, within EX28DRAFT_1616 at 1635.212 kb on - strand, within EX28DRAFT_1616 at 1635.261 kb on - strand, within EX28DRAFT_1616 at 1635.341 kb on - strand, within EX28DRAFT_1616 at 1635.524 kb on + strand, within EX28DRAFT_1616 at 1635.563 kb on + strand, within EX28DRAFT_1616 at 1635.680 kb on + strand, within EX28DRAFT_1616 at 1635.825 kb on + strand at 1635.828 kb on + strand at 1635.829 kb on - strand at 1635.829 kb on - strand at 1635.834 kb on + strand at 1635.835 kb on - strand at 1635.916 kb on - strand at 1635.916 kb on - strand at 1635.955 kb on + strand at 1635.955 kb on + strand at 1635.988 kb on + strand at 1636.018 kb on + strand at 1636.031 kb on + strand at 1636.247 kb on + strand, within EX28DRAFT_1617 at 1636.265 kb on + strand, within EX28DRAFT_1617 at 1636.265 kb on + strand, within EX28DRAFT_1617 at 1636.266 kb on - strand, within EX28DRAFT_1617 at 1636.354 kb on + strand, within EX28DRAFT_1617 at 1636.355 kb on - strand, within EX28DRAFT_1617 at 1636.681 kb on + strand, within EX28DRAFT_1617 at 1636.682 kb on - strand, within EX28DRAFT_1617 at 1636.682 kb on - strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.874 kb on + strand, within EX28DRAFT_1617 at 1636.875 kb on - strand, within EX28DRAFT_1617 at 1636.875 kb on - strand, within EX28DRAFT_1617 at 1636.876 kb on + strand, within EX28DRAFT_1617 at 1636.877 kb on - strand, within EX28DRAFT_1617 at 1636.877 kb on - strand, within EX28DRAFT_1617
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,633,405 + EX28DRAFT_1615 0.27 +0.2 1,633,407 + EX28DRAFT_1615 0.27 +0.2 1,633,529 - EX28DRAFT_1615 0.39 +0.6 1,633,603 + EX28DRAFT_1615 0.46 -0.1 1,633,604 - EX28DRAFT_1615 0.46 +0.4 1,633,624 + EX28DRAFT_1615 0.48 -1.7 1,633,625 - EX28DRAFT_1615 0.48 +0.1 1,633,693 - EX28DRAFT_1615 0.55 +2.1 1,633,693 - EX28DRAFT_1615 0.55 +0.0 1,633,693 - EX28DRAFT_1615 0.55 -0.4 1,633,920 + EX28DRAFT_1615 0.77 -0.1 1,633,947 - EX28DRAFT_1615 0.80 -1.5 1,633,947 - EX28DRAFT_1615 0.80 +1.1 1,634,214 + -0.0 1,634,312 + -0.1 1,634,358 + +0.4 1,634,398 + +0.4 1,634,399 - +0.3 1,634,465 - -0.3 1,634,533 + EX28DRAFT_1616 0.13 +0.2 1,634,578 + EX28DRAFT_1616 0.15 +0.5 1,634,661 + EX28DRAFT_1616 0.21 -0.2 1,634,762 - EX28DRAFT_1616 0.27 +2.3 1,634,762 - EX28DRAFT_1616 0.27 +0.5 1,635,055 + EX28DRAFT_1616 0.45 +0.9 1,635,056 - EX28DRAFT_1616 0.45 +0.8 1,635,212 - EX28DRAFT_1616 0.55 +0.2 1,635,261 - EX28DRAFT_1616 0.58 +1.5 1,635,341 - EX28DRAFT_1616 0.63 +0.8 1,635,524 + EX28DRAFT_1616 0.75 -0.2 1,635,563 + EX28DRAFT_1616 0.77 -0.7 1,635,680 + EX28DRAFT_1616 0.85 +0.8 1,635,825 + +2.2 1,635,828 + -0.8 1,635,829 - +0.1 1,635,829 - +0.5 1,635,834 + +0.6 1,635,835 - +0.1 1,635,916 - +0.1 1,635,916 - -0.4 1,635,955 + -0.3 1,635,955 + +0.2 1,635,988 + +1.1 1,636,018 + +0.2 1,636,031 + +1.1 1,636,247 + EX28DRAFT_1617 0.23 +0.9 1,636,265 + EX28DRAFT_1617 0.25 -0.0 1,636,265 + EX28DRAFT_1617 0.25 -0.5 1,636,266 - EX28DRAFT_1617 0.25 -0.0 1,636,354 + EX28DRAFT_1617 0.32 +0.0 1,636,355 - EX28DRAFT_1617 0.32 +0.5 1,636,681 + EX28DRAFT_1617 0.60 -0.1 1,636,682 - EX28DRAFT_1617 0.60 -0.1 1,636,682 - EX28DRAFT_1617 0.60 -0.3 1,636,874 + EX28DRAFT_1617 0.77 -0.0 1,636,874 + EX28DRAFT_1617 0.77 +0.0 1,636,874 + EX28DRAFT_1617 0.77 +0.2 1,636,874 + EX28DRAFT_1617 0.77 +0.5 1,636,875 - EX28DRAFT_1617 0.77 -0.3 1,636,875 - EX28DRAFT_1617 0.77 +0.1 1,636,876 + EX28DRAFT_1617 0.77 +0.1 1,636,877 - EX28DRAFT_1617 0.77 +0.4 1,636,877 - EX28DRAFT_1617 0.77 -0.1
Or see this region's nucleotide sequence