Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1616

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1615 and EX28DRAFT_1616 are separated by 177 nucleotidesEX28DRAFT_1616 and EX28DRAFT_1617 are separated by 48 nucleotides EX28DRAFT_1615: EX28DRAFT_1615 - transcriptional regulator, LacI family, at 1,633,127 to 1,634,155 _1615 EX28DRAFT_1616: EX28DRAFT_1616 - PTS system, maltose and glucose-specific subfamily, IIC component, at 1,634,333 to 1,635,925 _1616 EX28DRAFT_1617: EX28DRAFT_1617 - putative C-S lyase, at 1,635,974 to 1,637,146 _1617 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -1 0 1 2at 1633.405 kb on + strand, within EX28DRAFT_1615at 1633.407 kb on + strand, within EX28DRAFT_1615at 1633.529 kb on - strand, within EX28DRAFT_1615at 1633.603 kb on + strand, within EX28DRAFT_1615at 1633.604 kb on - strand, within EX28DRAFT_1615at 1633.624 kb on + strand, within EX28DRAFT_1615at 1633.625 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.920 kb on + strand, within EX28DRAFT_1615at 1633.947 kb on - strand, within EX28DRAFT_1615at 1633.947 kb on - strand, within EX28DRAFT_1615at 1634.214 kb on + strandat 1634.312 kb on + strandat 1634.358 kb on + strandat 1634.398 kb on + strandat 1634.399 kb on - strandat 1634.465 kb on - strandat 1634.533 kb on + strand, within EX28DRAFT_1616at 1634.578 kb on + strand, within EX28DRAFT_1616at 1634.661 kb on + strand, within EX28DRAFT_1616at 1634.762 kb on - strand, within EX28DRAFT_1616at 1634.762 kb on - strand, within EX28DRAFT_1616at 1635.055 kb on + strand, within EX28DRAFT_1616at 1635.056 kb on - strand, within EX28DRAFT_1616at 1635.212 kb on - strand, within EX28DRAFT_1616at 1635.261 kb on - strand, within EX28DRAFT_1616at 1635.341 kb on - strand, within EX28DRAFT_1616at 1635.524 kb on + strand, within EX28DRAFT_1616at 1635.563 kb on + strand, within EX28DRAFT_1616at 1635.680 kb on + strand, within EX28DRAFT_1616at 1635.825 kb on + strandat 1635.828 kb on + strandat 1635.829 kb on - strandat 1635.829 kb on - strandat 1635.834 kb on + strandat 1635.835 kb on - strandat 1635.916 kb on - strandat 1635.916 kb on - strandat 1635.955 kb on + strandat 1635.955 kb on + strandat 1635.988 kb on + strandat 1636.018 kb on + strandat 1636.031 kb on + strandat 1636.247 kb on + strand, within EX28DRAFT_1617at 1636.265 kb on + strand, within EX28DRAFT_1617at 1636.265 kb on + strand, within EX28DRAFT_1617at 1636.266 kb on - strand, within EX28DRAFT_1617at 1636.354 kb on + strand, within EX28DRAFT_1617at 1636.355 kb on - strand, within EX28DRAFT_1617at 1636.681 kb on + strand, within EX28DRAFT_1617at 1636.682 kb on - strand, within EX28DRAFT_1617at 1636.682 kb on - strand, within EX28DRAFT_1617at 1636.874 kb on + strand, within EX28DRAFT_1617at 1636.874 kb on + strand, within EX28DRAFT_1617at 1636.874 kb on + strand, within EX28DRAFT_1617at 1636.874 kb on + strand, within EX28DRAFT_1617at 1636.875 kb on - strand, within EX28DRAFT_1617at 1636.875 kb on - strand, within EX28DRAFT_1617at 1636.876 kb on + strand, within EX28DRAFT_1617at 1636.877 kb on - strand, within EX28DRAFT_1617at 1636.877 kb on - strand, within EX28DRAFT_1617

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,633,405 + EX28DRAFT_1615 0.27 +0.2
1,633,407 + EX28DRAFT_1615 0.27 +0.2
1,633,529 - EX28DRAFT_1615 0.39 +0.6
1,633,603 + EX28DRAFT_1615 0.46 -0.1
1,633,604 - EX28DRAFT_1615 0.46 +0.4
1,633,624 + EX28DRAFT_1615 0.48 -1.7
1,633,625 - EX28DRAFT_1615 0.48 +0.1
1,633,693 - EX28DRAFT_1615 0.55 +2.1
1,633,693 - EX28DRAFT_1615 0.55 +0.0
1,633,693 - EX28DRAFT_1615 0.55 -0.4
1,633,920 + EX28DRAFT_1615 0.77 -0.1
1,633,947 - EX28DRAFT_1615 0.80 -1.5
1,633,947 - EX28DRAFT_1615 0.80 +1.1
1,634,214 + -0.0
1,634,312 + -0.1
1,634,358 + +0.4
1,634,398 + +0.4
1,634,399 - +0.3
1,634,465 - -0.3
1,634,533 + EX28DRAFT_1616 0.13 +0.2
1,634,578 + EX28DRAFT_1616 0.15 +0.5
1,634,661 + EX28DRAFT_1616 0.21 -0.2
1,634,762 - EX28DRAFT_1616 0.27 +2.3
1,634,762 - EX28DRAFT_1616 0.27 +0.5
1,635,055 + EX28DRAFT_1616 0.45 +0.9
1,635,056 - EX28DRAFT_1616 0.45 +0.8
1,635,212 - EX28DRAFT_1616 0.55 +0.2
1,635,261 - EX28DRAFT_1616 0.58 +1.5
1,635,341 - EX28DRAFT_1616 0.63 +0.8
1,635,524 + EX28DRAFT_1616 0.75 -0.2
1,635,563 + EX28DRAFT_1616 0.77 -0.7
1,635,680 + EX28DRAFT_1616 0.85 +0.8
1,635,825 + +2.2
1,635,828 + -0.8
1,635,829 - +0.1
1,635,829 - +0.5
1,635,834 + +0.6
1,635,835 - +0.1
1,635,916 - +0.1
1,635,916 - -0.4
1,635,955 + -0.3
1,635,955 + +0.2
1,635,988 + +1.1
1,636,018 + +0.2
1,636,031 + +1.1
1,636,247 + EX28DRAFT_1617 0.23 +0.9
1,636,265 + EX28DRAFT_1617 0.25 -0.0
1,636,265 + EX28DRAFT_1617 0.25 -0.5
1,636,266 - EX28DRAFT_1617 0.25 -0.0
1,636,354 + EX28DRAFT_1617 0.32 +0.0
1,636,355 - EX28DRAFT_1617 0.32 +0.5
1,636,681 + EX28DRAFT_1617 0.60 -0.1
1,636,682 - EX28DRAFT_1617 0.60 -0.1
1,636,682 - EX28DRAFT_1617 0.60 -0.3
1,636,874 + EX28DRAFT_1617 0.77 -0.0
1,636,874 + EX28DRAFT_1617 0.77 +0.0
1,636,874 + EX28DRAFT_1617 0.77 +0.2
1,636,874 + EX28DRAFT_1617 0.77 +0.5
1,636,875 - EX28DRAFT_1617 0.77 -0.3
1,636,875 - EX28DRAFT_1617 0.77 +0.1
1,636,876 + EX28DRAFT_1617 0.77 +0.1
1,636,877 - EX28DRAFT_1617 0.77 +0.4
1,636,877 - EX28DRAFT_1617 0.77 -0.1

Or see this region's nucleotide sequence