Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1613

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1611 and EX28DRAFT_1612 are separated by 39 nucleotidesEX28DRAFT_1612 and EX28DRAFT_1613 are separated by 15 nucleotidesEX28DRAFT_1613 and EX28DRAFT_1614 are separated by 106 nucleotides EX28DRAFT_1611: EX28DRAFT_1611 - Uncharacterized protein conserved in bacteria, at 1,628,699 to 1,630,231 _1611 EX28DRAFT_1612: EX28DRAFT_1612 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,630,271 to 1,631,125 _1612 EX28DRAFT_1613: EX28DRAFT_1613 - Zn-dependent hydrolases, including glyoxylases, at 1,631,141 to 1,632,121 _1613 EX28DRAFT_1614: EX28DRAFT_1614 - Transcriptional regulator, at 1,632,228 to 1,633,124 _1614 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -2 -1 0 1 2at 1630.230 kb on - strandat 1630.230 kb on - strandat 1630.248 kb on + strandat 1630.248 kb on + strandat 1630.249 kb on - strandat 1630.493 kb on - strand, within EX28DRAFT_1612at 1630.575 kb on + strand, within EX28DRAFT_1612at 1630.575 kb on + strand, within EX28DRAFT_1612at 1630.575 kb on + strand, within EX28DRAFT_1612at 1630.575 kb on + strand, within EX28DRAFT_1612at 1630.576 kb on - strand, within EX28DRAFT_1612at 1630.576 kb on - strand, within EX28DRAFT_1612at 1630.648 kb on + strand, within EX28DRAFT_1612at 1630.648 kb on + strand, within EX28DRAFT_1612at 1630.886 kb on + strand, within EX28DRAFT_1612at 1630.887 kb on - strand, within EX28DRAFT_1612at 1630.918 kb on + strand, within EX28DRAFT_1612at 1630.919 kb on - strand, within EX28DRAFT_1612at 1630.961 kb on + strand, within EX28DRAFT_1612at 1631.022 kb on + strand, within EX28DRAFT_1612at 1631.022 kb on + strand, within EX28DRAFT_1612at 1631.023 kb on - strand, within EX28DRAFT_1612at 1631.023 kb on - strand, within EX28DRAFT_1612at 1631.142 kb on + strandat 1631.143 kb on - strandat 1631.143 kb on - strandat 1631.175 kb on + strandat 1631.184 kb on + strandat 1631.185 kb on - strandat 1631.203 kb on + strandat 1631.203 kb on + strandat 1631.228 kb on - strandat 1631.347 kb on + strand, within EX28DRAFT_1613at 1631.348 kb on - strand, within EX28DRAFT_1613at 1631.470 kb on - strand, within EX28DRAFT_1613at 1631.518 kb on + strand, within EX28DRAFT_1613at 1631.519 kb on - strand, within EX28DRAFT_1613at 1631.537 kb on - strand, within EX28DRAFT_1613at 1631.642 kb on + strand, within EX28DRAFT_1613at 1631.647 kb on - strand, within EX28DRAFT_1613at 1631.647 kb on - strand, within EX28DRAFT_1613at 1631.945 kb on + strand, within EX28DRAFT_1613at 1631.945 kb on + strand, within EX28DRAFT_1613at 1631.946 kb on - strand, within EX28DRAFT_1613at 1631.970 kb on + strand, within EX28DRAFT_1613at 1631.971 kb on - strand, within EX28DRAFT_1613at 1632.018 kb on + strand, within EX28DRAFT_1613at 1632.018 kb on + strand, within EX28DRAFT_1613at 1632.021 kb on + strand, within EX28DRAFT_1613at 1632.022 kb on - strand, within EX28DRAFT_1613at 1632.180 kb on + strandat 1632.181 kb on - strandat 1632.189 kb on + strandat 1632.335 kb on + strand, within EX28DRAFT_1614at 1632.336 kb on - strand, within EX28DRAFT_1614at 1632.450 kb on - strand, within EX28DRAFT_1614at 1632.640 kb on + strand, within EX28DRAFT_1614at 1632.641 kb on - strand, within EX28DRAFT_1614at 1632.736 kb on - strand, within EX28DRAFT_1614at 1632.736 kb on - strand, within EX28DRAFT_1614at 1632.943 kb on - strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.947 kb on - strand, within EX28DRAFT_1614at 1632.968 kb on + strand, within EX28DRAFT_1614at 1633.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,630,230 - +0.7
1,630,230 - -0.4
1,630,248 + +1.0
1,630,248 + +0.1
1,630,249 - +2.3
1,630,493 - EX28DRAFT_1612 0.26 +0.4
1,630,575 + EX28DRAFT_1612 0.36 -0.6
1,630,575 + EX28DRAFT_1612 0.36 -0.1
1,630,575 + EX28DRAFT_1612 0.36 +0.3
1,630,575 + EX28DRAFT_1612 0.36 +0.8
1,630,576 - EX28DRAFT_1612 0.36 -0.3
1,630,576 - EX28DRAFT_1612 0.36 -0.1
1,630,648 + EX28DRAFT_1612 0.44 +0.3
1,630,648 + EX28DRAFT_1612 0.44 -0.1
1,630,886 + EX28DRAFT_1612 0.72 -0.1
1,630,887 - EX28DRAFT_1612 0.72 +0.3
1,630,918 + EX28DRAFT_1612 0.76 -0.2
1,630,919 - EX28DRAFT_1612 0.76 -0.1
1,630,961 + EX28DRAFT_1612 0.81 -0.1
1,631,022 + EX28DRAFT_1612 0.88 +0.7
1,631,022 + EX28DRAFT_1612 0.88 +0.6
1,631,023 - EX28DRAFT_1612 0.88 -2.5
1,631,023 - EX28DRAFT_1612 0.88 -0.3
1,631,142 + -0.1
1,631,143 - +0.3
1,631,143 - -1.9
1,631,175 + -0.5
1,631,184 + +0.3
1,631,185 - -0.3
1,631,203 + -0.1
1,631,203 + -0.0
1,631,228 - +1.5
1,631,347 + EX28DRAFT_1613 0.21 +0.2
1,631,348 - EX28DRAFT_1613 0.21 -0.1
1,631,470 - EX28DRAFT_1613 0.34 +1.2
1,631,518 + EX28DRAFT_1613 0.38 -0.2
1,631,519 - EX28DRAFT_1613 0.39 +0.0
1,631,537 - EX28DRAFT_1613 0.40 -0.2
1,631,642 + EX28DRAFT_1613 0.51 -0.3
1,631,647 - EX28DRAFT_1613 0.52 +0.1
1,631,647 - EX28DRAFT_1613 0.52 -0.3
1,631,945 + EX28DRAFT_1613 0.82 +2.4
1,631,945 + EX28DRAFT_1613 0.82 +0.2
1,631,946 - EX28DRAFT_1613 0.82 -0.2
1,631,970 + EX28DRAFT_1613 0.85 -0.3
1,631,971 - EX28DRAFT_1613 0.85 +0.4
1,632,018 + EX28DRAFT_1613 0.89 +0.0
1,632,018 + EX28DRAFT_1613 0.89 +0.4
1,632,021 + EX28DRAFT_1613 0.90 +0.3
1,632,022 - EX28DRAFT_1613 0.90 -0.2
1,632,180 + -1.0
1,632,181 - +0.5
1,632,189 + -1.0
1,632,335 + EX28DRAFT_1614 0.12 +0.2
1,632,336 - EX28DRAFT_1614 0.12 +0.6
1,632,450 - EX28DRAFT_1614 0.25 +1.1
1,632,640 + EX28DRAFT_1614 0.46 -0.0
1,632,641 - EX28DRAFT_1614 0.46 -0.2
1,632,736 - EX28DRAFT_1614 0.57 -2.0
1,632,736 - EX28DRAFT_1614 0.57 -0.3
1,632,943 - EX28DRAFT_1614 0.80 +0.5
1,632,946 + EX28DRAFT_1614 0.80 -0.0
1,632,946 + EX28DRAFT_1614 0.80 -0.9
1,632,946 + EX28DRAFT_1614 0.80 -0.8
1,632,947 - EX28DRAFT_1614 0.80 +0.7
1,632,968 + EX28DRAFT_1614 0.82 -0.0
1,633,061 - +0.3

Or see this region's nucleotide sequence