Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1611 and EX28DRAFT_1612 are separated by 39 nucleotides EX28DRAFT_1612 and EX28DRAFT_1613 are separated by 15 nucleotides EX28DRAFT_1613 and EX28DRAFT_1614 are separated by 106 nucleotides
EX28DRAFT_1611: EX28DRAFT_1611 - Uncharacterized protein conserved in bacteria, at 1,628,699 to 1,630,231
_1611
EX28DRAFT_1612: EX28DRAFT_1612 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,630,271 to 1,631,125
_1612
EX28DRAFT_1613: EX28DRAFT_1613 - Zn-dependent hydrolases, including glyoxylases, at 1,631,141 to 1,632,121
_1613
EX28DRAFT_1614: EX28DRAFT_1614 - Transcriptional regulator, at 1,632,228 to 1,633,124
_1614
Position (kb)
1631
1632
1633 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1630.230 kb on - strand at 1630.230 kb on - strand at 1630.248 kb on + strand at 1630.248 kb on + strand at 1630.249 kb on - strand at 1630.493 kb on - strand, within EX28DRAFT_1612 at 1630.575 kb on + strand, within EX28DRAFT_1612 at 1630.575 kb on + strand, within EX28DRAFT_1612 at 1630.575 kb on + strand, within EX28DRAFT_1612 at 1630.575 kb on + strand, within EX28DRAFT_1612 at 1630.576 kb on - strand, within EX28DRAFT_1612 at 1630.576 kb on - strand, within EX28DRAFT_1612 at 1630.648 kb on + strand, within EX28DRAFT_1612 at 1630.648 kb on + strand, within EX28DRAFT_1612 at 1630.886 kb on + strand, within EX28DRAFT_1612 at 1630.887 kb on - strand, within EX28DRAFT_1612 at 1630.918 kb on + strand, within EX28DRAFT_1612 at 1630.919 kb on - strand, within EX28DRAFT_1612 at 1630.961 kb on + strand, within EX28DRAFT_1612 at 1631.022 kb on + strand, within EX28DRAFT_1612 at 1631.022 kb on + strand, within EX28DRAFT_1612 at 1631.023 kb on - strand, within EX28DRAFT_1612 at 1631.023 kb on - strand, within EX28DRAFT_1612 at 1631.142 kb on + strand at 1631.143 kb on - strand at 1631.143 kb on - strand at 1631.175 kb on + strand at 1631.184 kb on + strand at 1631.185 kb on - strand at 1631.203 kb on + strand at 1631.203 kb on + strand at 1631.228 kb on - strand at 1631.347 kb on + strand, within EX28DRAFT_1613 at 1631.348 kb on - strand, within EX28DRAFT_1613 at 1631.470 kb on - strand, within EX28DRAFT_1613 at 1631.518 kb on + strand, within EX28DRAFT_1613 at 1631.519 kb on - strand, within EX28DRAFT_1613 at 1631.537 kb on - strand, within EX28DRAFT_1613 at 1631.642 kb on + strand, within EX28DRAFT_1613 at 1631.647 kb on - strand, within EX28DRAFT_1613 at 1631.647 kb on - strand, within EX28DRAFT_1613 at 1631.945 kb on + strand, within EX28DRAFT_1613 at 1631.945 kb on + strand, within EX28DRAFT_1613 at 1631.946 kb on - strand, within EX28DRAFT_1613 at 1631.970 kb on + strand, within EX28DRAFT_1613 at 1631.971 kb on - strand, within EX28DRAFT_1613 at 1632.018 kb on + strand, within EX28DRAFT_1613 at 1632.018 kb on + strand, within EX28DRAFT_1613 at 1632.021 kb on + strand, within EX28DRAFT_1613 at 1632.022 kb on - strand, within EX28DRAFT_1613 at 1632.180 kb on + strand at 1632.181 kb on - strand at 1632.189 kb on + strand at 1632.335 kb on + strand, within EX28DRAFT_1614 at 1632.336 kb on - strand, within EX28DRAFT_1614 at 1632.450 kb on - strand, within EX28DRAFT_1614 at 1632.640 kb on + strand, within EX28DRAFT_1614 at 1632.641 kb on - strand, within EX28DRAFT_1614 at 1632.736 kb on - strand, within EX28DRAFT_1614 at 1632.736 kb on - strand, within EX28DRAFT_1614 at 1632.943 kb on - strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.947 kb on - strand, within EX28DRAFT_1614 at 1632.968 kb on + strand, within EX28DRAFT_1614 at 1633.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,630,230 - +0.7 1,630,230 - -0.4 1,630,248 + +1.0 1,630,248 + +0.1 1,630,249 - +2.3 1,630,493 - EX28DRAFT_1612 0.26 +0.4 1,630,575 + EX28DRAFT_1612 0.36 -0.6 1,630,575 + EX28DRAFT_1612 0.36 -0.1 1,630,575 + EX28DRAFT_1612 0.36 +0.3 1,630,575 + EX28DRAFT_1612 0.36 +0.8 1,630,576 - EX28DRAFT_1612 0.36 -0.3 1,630,576 - EX28DRAFT_1612 0.36 -0.1 1,630,648 + EX28DRAFT_1612 0.44 +0.3 1,630,648 + EX28DRAFT_1612 0.44 -0.1 1,630,886 + EX28DRAFT_1612 0.72 -0.1 1,630,887 - EX28DRAFT_1612 0.72 +0.3 1,630,918 + EX28DRAFT_1612 0.76 -0.2 1,630,919 - EX28DRAFT_1612 0.76 -0.1 1,630,961 + EX28DRAFT_1612 0.81 -0.1 1,631,022 + EX28DRAFT_1612 0.88 +0.7 1,631,022 + EX28DRAFT_1612 0.88 +0.6 1,631,023 - EX28DRAFT_1612 0.88 -2.5 1,631,023 - EX28DRAFT_1612 0.88 -0.3 1,631,142 + -0.1 1,631,143 - +0.3 1,631,143 - -1.9 1,631,175 + -0.5 1,631,184 + +0.3 1,631,185 - -0.3 1,631,203 + -0.1 1,631,203 + -0.0 1,631,228 - +1.5 1,631,347 + EX28DRAFT_1613 0.21 +0.2 1,631,348 - EX28DRAFT_1613 0.21 -0.1 1,631,470 - EX28DRAFT_1613 0.34 +1.2 1,631,518 + EX28DRAFT_1613 0.38 -0.2 1,631,519 - EX28DRAFT_1613 0.39 +0.0 1,631,537 - EX28DRAFT_1613 0.40 -0.2 1,631,642 + EX28DRAFT_1613 0.51 -0.3 1,631,647 - EX28DRAFT_1613 0.52 +0.1 1,631,647 - EX28DRAFT_1613 0.52 -0.3 1,631,945 + EX28DRAFT_1613 0.82 +2.4 1,631,945 + EX28DRAFT_1613 0.82 +0.2 1,631,946 - EX28DRAFT_1613 0.82 -0.2 1,631,970 + EX28DRAFT_1613 0.85 -0.3 1,631,971 - EX28DRAFT_1613 0.85 +0.4 1,632,018 + EX28DRAFT_1613 0.89 +0.0 1,632,018 + EX28DRAFT_1613 0.89 +0.4 1,632,021 + EX28DRAFT_1613 0.90 +0.3 1,632,022 - EX28DRAFT_1613 0.90 -0.2 1,632,180 + -1.0 1,632,181 - +0.5 1,632,189 + -1.0 1,632,335 + EX28DRAFT_1614 0.12 +0.2 1,632,336 - EX28DRAFT_1614 0.12 +0.6 1,632,450 - EX28DRAFT_1614 0.25 +1.1 1,632,640 + EX28DRAFT_1614 0.46 -0.0 1,632,641 - EX28DRAFT_1614 0.46 -0.2 1,632,736 - EX28DRAFT_1614 0.57 -2.0 1,632,736 - EX28DRAFT_1614 0.57 -0.3 1,632,943 - EX28DRAFT_1614 0.80 +0.5 1,632,946 + EX28DRAFT_1614 0.80 -0.0 1,632,946 + EX28DRAFT_1614 0.80 -0.9 1,632,946 + EX28DRAFT_1614 0.80 -0.8 1,632,947 - EX28DRAFT_1614 0.80 +0.7 1,632,968 + EX28DRAFT_1614 0.82 -0.0 1,633,061 - +0.3
Or see this region's nucleotide sequence