Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1599 and EX28DRAFT_1600 are separated by 209 nucleotides EX28DRAFT_1600 and EX28DRAFT_1601 are separated by 182 nucleotides EX28DRAFT_1601 and EX28DRAFT_1602 are separated by 9 nucleotides
EX28DRAFT_1599: EX28DRAFT_1599 - hypothetical protein, at 1,614,855 to 1,615,046
_1599
EX28DRAFT_1600: EX28DRAFT_1600 - Protein of unknown function (DUF1482), at 1,615,256 to 1,615,432
_1600
EX28DRAFT_1601: EX28DRAFT_1601 - Enterobacterial exodeoxyribonuclease VIII, at 1,615,615 to 1,618,776
_1601
EX28DRAFT_1602: EX28DRAFT_1602 - RecT family, at 1,618,786 to 1,619,871
_1602
Position (kb)
1615
1616
1617
1618
1619 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1614.672 kb on - strand at 1614.716 kb on - strand at 1614.737 kb on + strand at 1614.748 kb on - strand at 1614.748 kb on - strand at 1614.748 kb on - strand at 1614.749 kb on + strand at 1614.749 kb on + strand at 1614.750 kb on - strand at 1614.779 kb on + strand at 1614.796 kb on + strand at 1614.829 kb on - strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.848 kb on + strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.849 kb on - strand at 1614.850 kb on + strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.851 kb on - strand at 1614.856 kb on + strand at 1614.986 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.993 kb on - strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.994 kb on + strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1614.995 kb on - strand, within EX28DRAFT_1599 at 1615.022 kb on - strand, within EX28DRAFT_1599 at 1615.051 kb on - strand at 1615.062 kb on + strand at 1615.063 kb on - strand at 1615.108 kb on - strand at 1615.131 kb on - strand at 1615.131 kb on - strand at 1615.134 kb on + strand at 1615.218 kb on + strand at 1615.250 kb on - strand at 1615.250 kb on - strand at 1615.250 kb on - strand at 1615.330 kb on - strand, within EX28DRAFT_1600 at 1615.331 kb on + strand, within EX28DRAFT_1600 at 1615.331 kb on + strand, within EX28DRAFT_1600 at 1615.397 kb on + strand, within EX28DRAFT_1600 at 1615.398 kb on - strand, within EX28DRAFT_1600 at 1615.461 kb on + strand at 1615.472 kb on - strand at 1615.592 kb on - strand at 1615.592 kb on - strand at 1615.592 kb on - strand at 1615.592 kb on - strand at 1615.592 kb on - strand at 1615.604 kb on - strand at 1615.740 kb on + strand at 1615.741 kb on - strand at 1615.766 kb on - strand at 1616.029 kb on + strand, within EX28DRAFT_1601 at 1616.030 kb on - strand, within EX28DRAFT_1601 at 1616.030 kb on - strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.038 kb on + strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.039 kb on - strand, within EX28DRAFT_1601 at 1616.286 kb on - strand, within EX28DRAFT_1601 at 1616.353 kb on - strand, within EX28DRAFT_1601 at 1616.436 kb on + strand, within EX28DRAFT_1601 at 1616.509 kb on + strand, within EX28DRAFT_1601 at 1616.518 kb on - strand, within EX28DRAFT_1601 at 1616.518 kb on - strand, within EX28DRAFT_1601 at 1616.551 kb on + strand, within EX28DRAFT_1601 at 1616.608 kb on - strand, within EX28DRAFT_1601 at 1616.628 kb on + strand, within EX28DRAFT_1601 at 1616.637 kb on + strand, within EX28DRAFT_1601 at 1616.638 kb on - strand, within EX28DRAFT_1601 at 1616.719 kb on + strand, within EX28DRAFT_1601 at 1616.721 kb on + strand, within EX28DRAFT_1601 at 1616.772 kb on + strand, within EX28DRAFT_1601 at 1616.796 kb on + strand, within EX28DRAFT_1601 at 1616.816 kb on - strand, within EX28DRAFT_1601 at 1617.012 kb on - strand, within EX28DRAFT_1601 at 1617.196 kb on + strand, within EX28DRAFT_1601 at 1617.197 kb on - strand, within EX28DRAFT_1601 at 1617.270 kb on + strand, within EX28DRAFT_1601 at 1617.271 kb on - strand, within EX28DRAFT_1601 at 1617.271 kb on - strand, within EX28DRAFT_1601 at 1617.402 kb on + strand, within EX28DRAFT_1601 at 1617.535 kb on + strand, within EX28DRAFT_1601 at 1617.555 kb on + strand, within EX28DRAFT_1601 at 1617.555 kb on + strand, within EX28DRAFT_1601 at 1617.555 kb on + strand, within EX28DRAFT_1601 at 1617.595 kb on + strand, within EX28DRAFT_1601 at 1617.619 kb on - strand, within EX28DRAFT_1601 at 1617.716 kb on + strand, within EX28DRAFT_1601 at 1617.843 kb on + strand, within EX28DRAFT_1601 at 1617.844 kb on - strand, within EX28DRAFT_1601 at 1617.844 kb on - strand, within EX28DRAFT_1601 at 1617.904 kb on + strand, within EX28DRAFT_1601 at 1617.904 kb on + strand, within EX28DRAFT_1601 at 1617.905 kb on - strand, within EX28DRAFT_1601 at 1617.905 kb on - strand, within EX28DRAFT_1601 at 1617.907 kb on - strand, within EX28DRAFT_1601 at 1617.907 kb on - strand, within EX28DRAFT_1601 at 1617.926 kb on - strand, within EX28DRAFT_1601 at 1617.933 kb on + strand, within EX28DRAFT_1601 at 1617.933 kb on + strand, within EX28DRAFT_1601 at 1618.146 kb on + strand, within EX28DRAFT_1601 at 1618.147 kb on - strand, within EX28DRAFT_1601 at 1618.272 kb on - strand, within EX28DRAFT_1601 at 1618.334 kb on - strand, within EX28DRAFT_1601 at 1618.501 kb on + strand at 1618.522 kb on + strand at 1618.523 kb on - strand at 1618.583 kb on - strand at 1618.583 kb on - strand at 1618.670 kb on + strand at 1618.671 kb on - strand at 1618.714 kb on + strand at 1618.715 kb on - strand at 1618.785 kb on + strand at 1618.785 kb on + strand at 1618.785 kb on + strand at 1618.785 kb on + strand at 1618.785 kb on + strand at 1618.785 kb on + strand at 1618.786 kb on - strand at 1618.786 kb on - strand at 1618.797 kb on + strand at 1618.830 kb on + strand at 1618.861 kb on + strand at 1618.861 kb on + strand at 1618.912 kb on - strand, within EX28DRAFT_1602 at 1618.912 kb on - strand, within EX28DRAFT_1602 at 1619.102 kb on - strand, within EX28DRAFT_1602 at 1619.102 kb on - strand, within EX28DRAFT_1602 at 1619.235 kb on + strand, within EX28DRAFT_1602 at 1619.336 kb on - strand, within EX28DRAFT_1602 at 1619.336 kb on - strand, within EX28DRAFT_1602 at 1619.472 kb on + strand, within EX28DRAFT_1602 at 1619.590 kb on - strand, within EX28DRAFT_1602
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,614,672 - +0.4 1,614,716 - +0.1 1,614,737 + +0.4 1,614,748 - -1.2 1,614,748 - -0.5 1,614,748 - -0.5 1,614,749 + -2.0 1,614,749 + +0.1 1,614,750 - -0.4 1,614,779 + -0.0 1,614,796 + +0.4 1,614,829 - -0.2 1,614,848 + -0.6 1,614,848 + +0.7 1,614,848 + +0.0 1,614,848 + +0.6 1,614,848 + +0.7 1,614,848 + -2.2 1,614,848 + -0.1 1,614,848 + -0.1 1,614,849 - -0.4 1,614,849 - -0.7 1,614,849 - -0.1 1,614,849 - +0.2 1,614,850 + -2.5 1,614,851 - +0.1 1,614,851 - -0.3 1,614,851 - +0.1 1,614,851 - -1.1 1,614,851 - -1.5 1,614,856 + -1.4 1,614,986 - EX28DRAFT_1599 0.68 +0.1 1,614,993 - EX28DRAFT_1599 0.72 +0.1 1,614,993 - EX28DRAFT_1599 0.72 +0.4 1,614,993 - EX28DRAFT_1599 0.72 +0.5 1,614,994 + EX28DRAFT_1599 0.72 +0.0 1,614,994 + EX28DRAFT_1599 0.72 +0.8 1,614,994 + EX28DRAFT_1599 0.72 +0.2 1,614,995 - EX28DRAFT_1599 0.73 +0.6 1,614,995 - EX28DRAFT_1599 0.73 +0.0 1,614,995 - EX28DRAFT_1599 0.73 -0.0 1,614,995 - EX28DRAFT_1599 0.73 -0.4 1,615,022 - EX28DRAFT_1599 0.87 -0.1 1,615,051 - +0.7 1,615,062 + -0.7 1,615,063 - -0.3 1,615,108 - +1.1 1,615,131 - +0.0 1,615,131 - -0.2 1,615,134 + -0.1 1,615,218 + +2.1 1,615,250 - -2.7 1,615,250 - -0.3 1,615,250 - +1.2 1,615,330 - EX28DRAFT_1600 0.42 +0.3 1,615,331 + EX28DRAFT_1600 0.42 +0.2 1,615,331 + EX28DRAFT_1600 0.42 -0.3 1,615,397 + EX28DRAFT_1600 0.80 -0.3 1,615,398 - EX28DRAFT_1600 0.80 -0.4 1,615,461 + +0.1 1,615,472 - -1.0 1,615,592 - +0.8 1,615,592 - +1.4 1,615,592 - -2.5 1,615,592 - +0.3 1,615,592 - -0.2 1,615,604 - +0.6 1,615,740 + +0.5 1,615,741 - -0.1 1,615,766 - -0.6 1,616,029 + EX28DRAFT_1601 0.13 -0.0 1,616,030 - EX28DRAFT_1601 0.13 +0.6 1,616,030 - EX28DRAFT_1601 0.13 +0.3 1,616,038 + EX28DRAFT_1601 0.13 +1.0 1,616,038 + EX28DRAFT_1601 0.13 +0.1 1,616,038 + EX28DRAFT_1601 0.13 +0.0 1,616,038 + EX28DRAFT_1601 0.13 +0.4 1,616,038 + EX28DRAFT_1601 0.13 +0.2 1,616,038 + EX28DRAFT_1601 0.13 -0.4 1,616,038 + EX28DRAFT_1601 0.13 +0.0 1,616,039 - EX28DRAFT_1601 0.13 +0.3 1,616,039 - EX28DRAFT_1601 0.13 +0.2 1,616,039 - EX28DRAFT_1601 0.13 +0.9 1,616,039 - EX28DRAFT_1601 0.13 -0.7 1,616,039 - EX28DRAFT_1601 0.13 +0.0 1,616,039 - EX28DRAFT_1601 0.13 +0.3 1,616,039 - EX28DRAFT_1601 0.13 -0.4 1,616,039 - EX28DRAFT_1601 0.13 +0.7 1,616,286 - EX28DRAFT_1601 0.21 +0.4 1,616,353 - EX28DRAFT_1601 0.23 +0.7 1,616,436 + EX28DRAFT_1601 0.26 +0.8 1,616,509 + EX28DRAFT_1601 0.28 -0.3 1,616,518 - EX28DRAFT_1601 0.29 +0.1 1,616,518 - EX28DRAFT_1601 0.29 +1.1 1,616,551 + EX28DRAFT_1601 0.30 +0.6 1,616,608 - EX28DRAFT_1601 0.31 -1.6 1,616,628 + EX28DRAFT_1601 0.32 -0.1 1,616,637 + EX28DRAFT_1601 0.32 -0.5 1,616,638 - EX28DRAFT_1601 0.32 -0.2 1,616,719 + EX28DRAFT_1601 0.35 +2.0 1,616,721 + EX28DRAFT_1601 0.35 -0.5 1,616,772 + EX28DRAFT_1601 0.37 -0.5 1,616,796 + EX28DRAFT_1601 0.37 +0.7 1,616,816 - EX28DRAFT_1601 0.38 +0.2 1,617,012 - EX28DRAFT_1601 0.44 -0.0 1,617,196 + EX28DRAFT_1601 0.50 -0.6 1,617,197 - EX28DRAFT_1601 0.50 +0.9 1,617,270 + EX28DRAFT_1601 0.52 -1.1 1,617,271 - EX28DRAFT_1601 0.52 -0.3 1,617,271 - EX28DRAFT_1601 0.52 +0.3 1,617,402 + EX28DRAFT_1601 0.57 +0.3 1,617,535 + EX28DRAFT_1601 0.61 +0.2 1,617,555 + EX28DRAFT_1601 0.61 +0.2 1,617,555 + EX28DRAFT_1601 0.61 +1.1 1,617,555 + EX28DRAFT_1601 0.61 +0.2 1,617,595 + EX28DRAFT_1601 0.63 -0.7 1,617,619 - EX28DRAFT_1601 0.63 -1.1 1,617,716 + EX28DRAFT_1601 0.66 -1.0 1,617,843 + EX28DRAFT_1601 0.70 +0.7 1,617,844 - EX28DRAFT_1601 0.70 +0.3 1,617,844 - EX28DRAFT_1601 0.70 -0.1 1,617,904 + EX28DRAFT_1601 0.72 +0.5 1,617,904 + EX28DRAFT_1601 0.72 -0.0 1,617,905 - EX28DRAFT_1601 0.72 -1.3 1,617,905 - EX28DRAFT_1601 0.72 -0.1 1,617,907 - EX28DRAFT_1601 0.72 +0.3 1,617,907 - EX28DRAFT_1601 0.72 +0.1 1,617,926 - EX28DRAFT_1601 0.73 -0.3 1,617,933 + EX28DRAFT_1601 0.73 -0.0 1,617,933 + EX28DRAFT_1601 0.73 -0.0 1,618,146 + EX28DRAFT_1601 0.80 -0.1 1,618,147 - EX28DRAFT_1601 0.80 +0.1 1,618,272 - EX28DRAFT_1601 0.84 -1.3 1,618,334 - EX28DRAFT_1601 0.86 +1.3 1,618,501 + +0.1 1,618,522 + +0.5 1,618,523 - -0.3 1,618,583 - +0.7 1,618,583 - -0.2 1,618,670 + +2.1 1,618,671 - +0.2 1,618,714 + -0.1 1,618,715 - +1.4 1,618,785 + +0.3 1,618,785 + +0.8 1,618,785 + +0.4 1,618,785 + -0.3 1,618,785 + -0.5 1,618,785 + -3.5 1,618,786 - -0.2 1,618,786 - +0.1 1,618,797 + +1.4 1,618,830 + -0.2 1,618,861 + +1.3 1,618,861 + +0.4 1,618,912 - EX28DRAFT_1602 0.12 -0.3 1,618,912 - EX28DRAFT_1602 0.12 -1.0 1,619,102 - EX28DRAFT_1602 0.29 -0.8 1,619,102 - EX28DRAFT_1602 0.29 -0.3 1,619,235 + EX28DRAFT_1602 0.41 +0.4 1,619,336 - EX28DRAFT_1602 0.51 -0.9 1,619,336 - EX28DRAFT_1602 0.51 +0.2 1,619,472 + EX28DRAFT_1602 0.63 -0.1 1,619,590 - EX28DRAFT_1602 0.74 +0.7
Or see this region's nucleotide sequence