Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1558 and EX28DRAFT_1559 are separated by 60 nucleotides EX28DRAFT_1559 and EX28DRAFT_1560 overlap by 1 nucleotides EX28DRAFT_1560 and EX28DRAFT_1561 are separated by 1 nucleotides EX28DRAFT_1561 and EX28DRAFT_1562 overlap by 4 nucleotides
EX28DRAFT_1558: EX28DRAFT_1558 - hypothetical protein, at 1,576,259 to 1,576,825
_1558
EX28DRAFT_1559: EX28DRAFT_1559 - Phage-related protein, tail component, at 1,576,886 to 1,577,476
_1559
EX28DRAFT_1560: EX28DRAFT_1560 - Predicted metal-dependent protease of the PAD1/JAB1 superfamily, at 1,577,476 to 1,578,198
_1560
EX28DRAFT_1561: EX28DRAFT_1561 - lambda-like phage minor tail protein L, at 1,578,200 to 1,578,955
_1561
EX28DRAFT_1562: EX28DRAFT_1562 - Phage-related protein, at 1,578,952 to 1,579,299
_1562
Position (kb)
1577
1578
1579 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1576.483 kb on - strand, within EX28DRAFT_1558 at 1576.670 kb on + strand, within EX28DRAFT_1558 at 1576.670 kb on + strand, within EX28DRAFT_1558 at 1576.810 kb on + strand at 1576.841 kb on + strand at 1576.841 kb on + strand at 1576.841 kb on + strand at 1576.842 kb on - strand at 1576.843 kb on + strand at 1576.870 kb on + strand at 1576.882 kb on - strand at 1576.883 kb on + strand at 1576.883 kb on + strand at 1576.883 kb on + strand at 1576.884 kb on - strand at 1576.884 kb on - strand at 1576.906 kb on - strand at 1576.992 kb on - strand, within EX28DRAFT_1559 at 1577.111 kb on + strand, within EX28DRAFT_1559 at 1577.142 kb on + strand, within EX28DRAFT_1559 at 1577.142 kb on + strand, within EX28DRAFT_1559 at 1577.180 kb on + strand, within EX28DRAFT_1559 at 1577.181 kb on - strand, within EX28DRAFT_1559 at 1577.307 kb on + strand, within EX28DRAFT_1559 at 1577.307 kb on + strand, within EX28DRAFT_1559 at 1577.307 kb on + strand, within EX28DRAFT_1559 at 1577.308 kb on - strand, within EX28DRAFT_1559 at 1577.308 kb on - strand, within EX28DRAFT_1559 at 1577.311 kb on + strand, within EX28DRAFT_1559 at 1577.312 kb on - strand, within EX28DRAFT_1559 at 1577.428 kb on + strand at 1577.428 kb on + strand at 1577.429 kb on - strand at 1577.432 kb on - strand at 1577.432 kb on - strand at 1577.435 kb on + strand at 1577.445 kb on + strand at 1577.754 kb on - strand, within EX28DRAFT_1560 at 1577.766 kb on - strand, within EX28DRAFT_1560 at 1577.828 kb on + strand, within EX28DRAFT_1560 at 1577.828 kb on + strand, within EX28DRAFT_1560 at 1577.880 kb on + strand, within EX28DRAFT_1560 at 1577.887 kb on - strand, within EX28DRAFT_1560 at 1577.916 kb on + strand, within EX28DRAFT_1560 at 1577.916 kb on + strand, within EX28DRAFT_1560 at 1577.916 kb on + strand, within EX28DRAFT_1560 at 1577.992 kb on - strand, within EX28DRAFT_1560 at 1577.992 kb on - strand, within EX28DRAFT_1560 at 1577.992 kb on - strand, within EX28DRAFT_1560 at 1577.992 kb on - strand, within EX28DRAFT_1560 at 1577.995 kb on + strand, within EX28DRAFT_1560 at 1577.995 kb on + strand, within EX28DRAFT_1560 at 1578.201 kb on + strand at 1578.202 kb on - strand at 1578.202 kb on - strand at 1578.242 kb on - strand at 1578.342 kb on + strand, within EX28DRAFT_1561 at 1578.464 kb on - strand, within EX28DRAFT_1561 at 1578.478 kb on + strand, within EX28DRAFT_1561 at 1578.516 kb on + strand, within EX28DRAFT_1561 at 1578.661 kb on + strand, within EX28DRAFT_1561 at 1578.661 kb on + strand, within EX28DRAFT_1561 at 1578.662 kb on - strand, within EX28DRAFT_1561 at 1578.739 kb on + strand, within EX28DRAFT_1561 at 1578.739 kb on + strand, within EX28DRAFT_1561 at 1578.739 kb on + strand, within EX28DRAFT_1561 at 1578.740 kb on - strand, within EX28DRAFT_1561 at 1578.741 kb on + strand, within EX28DRAFT_1561 at 1578.757 kb on - strand, within EX28DRAFT_1561 at 1578.779 kb on - strand, within EX28DRAFT_1561 at 1578.849 kb on + strand, within EX28DRAFT_1561 at 1578.850 kb on - strand, within EX28DRAFT_1561 at 1578.850 kb on - strand, within EX28DRAFT_1561 at 1578.911 kb on + strand at 1578.911 kb on + strand at 1578.912 kb on - strand at 1578.962 kb on + strand at 1579.020 kb on + strand, within EX28DRAFT_1562 at 1579.077 kb on + strand, within EX28DRAFT_1562 at 1579.089 kb on + strand, within EX28DRAFT_1562 at 1579.145 kb on - strand, within EX28DRAFT_1562
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,576,483 - EX28DRAFT_1558 0.40 -1.1 1,576,670 + EX28DRAFT_1558 0.72 -0.4 1,576,670 + EX28DRAFT_1558 0.72 -0.4 1,576,810 + -0.6 1,576,841 + -0.2 1,576,841 + -0.0 1,576,841 + +0.7 1,576,842 - +0.8 1,576,843 + -0.2 1,576,870 + -1.0 1,576,882 - +0.8 1,576,883 + +0.4 1,576,883 + +0.7 1,576,883 + +0.9 1,576,884 - +0.4 1,576,884 - -0.1 1,576,906 - +0.5 1,576,992 - EX28DRAFT_1559 0.18 +0.9 1,577,111 + EX28DRAFT_1559 0.38 +1.4 1,577,142 + EX28DRAFT_1559 0.43 -0.5 1,577,142 + EX28DRAFT_1559 0.43 -0.4 1,577,180 + EX28DRAFT_1559 0.50 +0.4 1,577,181 - EX28DRAFT_1559 0.50 -0.6 1,577,307 + EX28DRAFT_1559 0.71 +0.1 1,577,307 + EX28DRAFT_1559 0.71 +0.5 1,577,307 + EX28DRAFT_1559 0.71 +0.0 1,577,308 - EX28DRAFT_1559 0.71 +0.2 1,577,308 - EX28DRAFT_1559 0.71 +0.5 1,577,311 + EX28DRAFT_1559 0.72 -0.5 1,577,312 - EX28DRAFT_1559 0.72 -0.2 1,577,428 + +0.8 1,577,428 + -1.4 1,577,429 - -0.2 1,577,432 - +0.2 1,577,432 - -2.1 1,577,435 + +0.3 1,577,445 + +1.1 1,577,754 - EX28DRAFT_1560 0.38 -0.2 1,577,766 - EX28DRAFT_1560 0.40 -0.0 1,577,828 + EX28DRAFT_1560 0.49 -0.1 1,577,828 + EX28DRAFT_1560 0.49 -0.5 1,577,880 + EX28DRAFT_1560 0.56 +0.3 1,577,887 - EX28DRAFT_1560 0.57 -1.0 1,577,916 + EX28DRAFT_1560 0.61 +0.5 1,577,916 + EX28DRAFT_1560 0.61 -0.3 1,577,916 + EX28DRAFT_1560 0.61 +0.2 1,577,992 - EX28DRAFT_1560 0.71 +3.3 1,577,992 - EX28DRAFT_1560 0.71 +1.5 1,577,992 - EX28DRAFT_1560 0.71 +0.0 1,577,992 - EX28DRAFT_1560 0.71 -3.0 1,577,995 + EX28DRAFT_1560 0.72 +0.1 1,577,995 + EX28DRAFT_1560 0.72 +2.0 1,578,201 + -0.4 1,578,202 - -0.3 1,578,202 - +0.0 1,578,242 - +0.3 1,578,342 + EX28DRAFT_1561 0.19 +0.8 1,578,464 - EX28DRAFT_1561 0.35 -0.2 1,578,478 + EX28DRAFT_1561 0.37 -0.7 1,578,516 + EX28DRAFT_1561 0.42 +0.1 1,578,661 + EX28DRAFT_1561 0.61 -2.2 1,578,661 + EX28DRAFT_1561 0.61 +0.1 1,578,662 - EX28DRAFT_1561 0.61 -0.4 1,578,739 + EX28DRAFT_1561 0.71 +0.9 1,578,739 + EX28DRAFT_1561 0.71 +0.2 1,578,739 + EX28DRAFT_1561 0.71 +0.1 1,578,740 - EX28DRAFT_1561 0.71 -0.5 1,578,741 + EX28DRAFT_1561 0.72 -0.6 1,578,757 - EX28DRAFT_1561 0.74 +0.1 1,578,779 - EX28DRAFT_1561 0.77 -0.1 1,578,849 + EX28DRAFT_1561 0.86 -0.7 1,578,850 - EX28DRAFT_1561 0.86 -0.7 1,578,850 - EX28DRAFT_1561 0.86 -0.6 1,578,911 + -0.4 1,578,911 + +0.5 1,578,912 - +0.3 1,578,962 + -0.1 1,579,020 + EX28DRAFT_1562 0.20 -0.1 1,579,077 + EX28DRAFT_1562 0.36 -0.1 1,579,089 + EX28DRAFT_1562 0.39 +0.3 1,579,145 - EX28DRAFT_1562 0.55 +0.1
Or see this region's nucleotide sequence