Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1560

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1558 and EX28DRAFT_1559 are separated by 60 nucleotidesEX28DRAFT_1559 and EX28DRAFT_1560 overlap by 1 nucleotidesEX28DRAFT_1560 and EX28DRAFT_1561 are separated by 1 nucleotidesEX28DRAFT_1561 and EX28DRAFT_1562 overlap by 4 nucleotides EX28DRAFT_1558: EX28DRAFT_1558 - hypothetical protein, at 1,576,259 to 1,576,825 _1558 EX28DRAFT_1559: EX28DRAFT_1559 - Phage-related protein, tail component, at 1,576,886 to 1,577,476 _1559 EX28DRAFT_1560: EX28DRAFT_1560 - Predicted metal-dependent protease of the PAD1/JAB1 superfamily, at 1,577,476 to 1,578,198 _1560 EX28DRAFT_1561: EX28DRAFT_1561 - lambda-like phage minor tail protein L, at 1,578,200 to 1,578,955 _1561 EX28DRAFT_1562: EX28DRAFT_1562 - Phage-related protein, at 1,578,952 to 1,579,299 _1562 Position (kb) 1577 1578 1579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1576.483 kb on - strand, within EX28DRAFT_1558at 1576.670 kb on + strand, within EX28DRAFT_1558at 1576.670 kb on + strand, within EX28DRAFT_1558at 1576.810 kb on + strandat 1576.841 kb on + strandat 1576.841 kb on + strandat 1576.841 kb on + strandat 1576.842 kb on - strandat 1576.843 kb on + strandat 1576.870 kb on + strandat 1576.882 kb on - strandat 1576.883 kb on + strandat 1576.883 kb on + strandat 1576.883 kb on + strandat 1576.884 kb on - strandat 1576.884 kb on - strandat 1576.906 kb on - strandat 1576.992 kb on - strand, within EX28DRAFT_1559at 1577.111 kb on + strand, within EX28DRAFT_1559at 1577.142 kb on + strand, within EX28DRAFT_1559at 1577.142 kb on + strand, within EX28DRAFT_1559at 1577.180 kb on + strand, within EX28DRAFT_1559at 1577.181 kb on - strand, within EX28DRAFT_1559at 1577.307 kb on + strand, within EX28DRAFT_1559at 1577.307 kb on + strand, within EX28DRAFT_1559at 1577.307 kb on + strand, within EX28DRAFT_1559at 1577.308 kb on - strand, within EX28DRAFT_1559at 1577.308 kb on - strand, within EX28DRAFT_1559at 1577.311 kb on + strand, within EX28DRAFT_1559at 1577.312 kb on - strand, within EX28DRAFT_1559at 1577.428 kb on + strandat 1577.428 kb on + strandat 1577.429 kb on - strandat 1577.432 kb on - strandat 1577.432 kb on - strandat 1577.435 kb on + strandat 1577.445 kb on + strandat 1577.754 kb on - strand, within EX28DRAFT_1560at 1577.766 kb on - strand, within EX28DRAFT_1560at 1577.828 kb on + strand, within EX28DRAFT_1560at 1577.828 kb on + strand, within EX28DRAFT_1560at 1577.880 kb on + strand, within EX28DRAFT_1560at 1577.887 kb on - strand, within EX28DRAFT_1560at 1577.916 kb on + strand, within EX28DRAFT_1560at 1577.916 kb on + strand, within EX28DRAFT_1560at 1577.916 kb on + strand, within EX28DRAFT_1560at 1577.992 kb on - strand, within EX28DRAFT_1560at 1577.992 kb on - strand, within EX28DRAFT_1560at 1577.992 kb on - strand, within EX28DRAFT_1560at 1577.992 kb on - strand, within EX28DRAFT_1560at 1577.995 kb on + strand, within EX28DRAFT_1560at 1577.995 kb on + strand, within EX28DRAFT_1560at 1578.201 kb on + strandat 1578.202 kb on - strandat 1578.202 kb on - strandat 1578.242 kb on - strandat 1578.342 kb on + strand, within EX28DRAFT_1561at 1578.464 kb on - strand, within EX28DRAFT_1561at 1578.478 kb on + strand, within EX28DRAFT_1561at 1578.516 kb on + strand, within EX28DRAFT_1561at 1578.661 kb on + strand, within EX28DRAFT_1561at 1578.661 kb on + strand, within EX28DRAFT_1561at 1578.662 kb on - strand, within EX28DRAFT_1561at 1578.739 kb on + strand, within EX28DRAFT_1561at 1578.739 kb on + strand, within EX28DRAFT_1561at 1578.739 kb on + strand, within EX28DRAFT_1561at 1578.740 kb on - strand, within EX28DRAFT_1561at 1578.741 kb on + strand, within EX28DRAFT_1561at 1578.757 kb on - strand, within EX28DRAFT_1561at 1578.779 kb on - strand, within EX28DRAFT_1561at 1578.849 kb on + strand, within EX28DRAFT_1561at 1578.850 kb on - strand, within EX28DRAFT_1561at 1578.850 kb on - strand, within EX28DRAFT_1561at 1578.911 kb on + strandat 1578.911 kb on + strandat 1578.912 kb on - strandat 1578.962 kb on + strandat 1579.020 kb on + strand, within EX28DRAFT_1562at 1579.077 kb on + strand, within EX28DRAFT_1562at 1579.089 kb on + strand, within EX28DRAFT_1562at 1579.145 kb on - strand, within EX28DRAFT_1562

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,576,483 - EX28DRAFT_1558 0.40 -1.1
1,576,670 + EX28DRAFT_1558 0.72 -0.4
1,576,670 + EX28DRAFT_1558 0.72 -0.4
1,576,810 + -0.6
1,576,841 + -0.2
1,576,841 + -0.0
1,576,841 + +0.7
1,576,842 - +0.8
1,576,843 + -0.2
1,576,870 + -1.0
1,576,882 - +0.8
1,576,883 + +0.4
1,576,883 + +0.7
1,576,883 + +0.9
1,576,884 - +0.4
1,576,884 - -0.1
1,576,906 - +0.5
1,576,992 - EX28DRAFT_1559 0.18 +0.9
1,577,111 + EX28DRAFT_1559 0.38 +1.4
1,577,142 + EX28DRAFT_1559 0.43 -0.5
1,577,142 + EX28DRAFT_1559 0.43 -0.4
1,577,180 + EX28DRAFT_1559 0.50 +0.4
1,577,181 - EX28DRAFT_1559 0.50 -0.6
1,577,307 + EX28DRAFT_1559 0.71 +0.1
1,577,307 + EX28DRAFT_1559 0.71 +0.5
1,577,307 + EX28DRAFT_1559 0.71 +0.0
1,577,308 - EX28DRAFT_1559 0.71 +0.2
1,577,308 - EX28DRAFT_1559 0.71 +0.5
1,577,311 + EX28DRAFT_1559 0.72 -0.5
1,577,312 - EX28DRAFT_1559 0.72 -0.2
1,577,428 + +0.8
1,577,428 + -1.4
1,577,429 - -0.2
1,577,432 - +0.2
1,577,432 - -2.1
1,577,435 + +0.3
1,577,445 + +1.1
1,577,754 - EX28DRAFT_1560 0.38 -0.2
1,577,766 - EX28DRAFT_1560 0.40 -0.0
1,577,828 + EX28DRAFT_1560 0.49 -0.1
1,577,828 + EX28DRAFT_1560 0.49 -0.5
1,577,880 + EX28DRAFT_1560 0.56 +0.3
1,577,887 - EX28DRAFT_1560 0.57 -1.0
1,577,916 + EX28DRAFT_1560 0.61 +0.5
1,577,916 + EX28DRAFT_1560 0.61 -0.3
1,577,916 + EX28DRAFT_1560 0.61 +0.2
1,577,992 - EX28DRAFT_1560 0.71 +3.3
1,577,992 - EX28DRAFT_1560 0.71 +1.5
1,577,992 - EX28DRAFT_1560 0.71 +0.0
1,577,992 - EX28DRAFT_1560 0.71 -3.0
1,577,995 + EX28DRAFT_1560 0.72 +0.1
1,577,995 + EX28DRAFT_1560 0.72 +2.0
1,578,201 + -0.4
1,578,202 - -0.3
1,578,202 - +0.0
1,578,242 - +0.3
1,578,342 + EX28DRAFT_1561 0.19 +0.8
1,578,464 - EX28DRAFT_1561 0.35 -0.2
1,578,478 + EX28DRAFT_1561 0.37 -0.7
1,578,516 + EX28DRAFT_1561 0.42 +0.1
1,578,661 + EX28DRAFT_1561 0.61 -2.2
1,578,661 + EX28DRAFT_1561 0.61 +0.1
1,578,662 - EX28DRAFT_1561 0.61 -0.4
1,578,739 + EX28DRAFT_1561 0.71 +0.9
1,578,739 + EX28DRAFT_1561 0.71 +0.2
1,578,739 + EX28DRAFT_1561 0.71 +0.1
1,578,740 - EX28DRAFT_1561 0.71 -0.5
1,578,741 + EX28DRAFT_1561 0.72 -0.6
1,578,757 - EX28DRAFT_1561 0.74 +0.1
1,578,779 - EX28DRAFT_1561 0.77 -0.1
1,578,849 + EX28DRAFT_1561 0.86 -0.7
1,578,850 - EX28DRAFT_1561 0.86 -0.7
1,578,850 - EX28DRAFT_1561 0.86 -0.6
1,578,911 + -0.4
1,578,911 + +0.5
1,578,912 - +0.3
1,578,962 + -0.1
1,579,020 + EX28DRAFT_1562 0.20 -0.1
1,579,077 + EX28DRAFT_1562 0.36 -0.1
1,579,089 + EX28DRAFT_1562 0.39 +0.3
1,579,145 - EX28DRAFT_1562 0.55 +0.1

Or see this region's nucleotide sequence