Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1553

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1552 and EX28DRAFT_1553 are separated by 916 nucleotidesEX28DRAFT_1553 and EX28DRAFT_1554 are separated by 2 nucleotidesEX28DRAFT_1554 and EX28DRAFT_1555 are separated by 229 nucleotides EX28DRAFT_1552: EX28DRAFT_1552 - Uncharacterized conserved protein, at 1,567,052 to 1,567,729 _1552 EX28DRAFT_1553: EX28DRAFT_1553 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,568,646 to 1,569,914 _1553 EX28DRAFT_1554: EX28DRAFT_1554 - Peptidase S24-like, at 1,569,917 to 1,570,336 _1554 EX28DRAFT_1555: EX28DRAFT_1555 - Chaperone of endosialidase, at 1,570,566 to 1,571,966 _1555 Position (kb) 1568 1569 1570Strain fitness (log2 ratio) -2 -1 0 1 2at 1568.155 kb on - strandat 1568.383 kb on - strandat 1568.440 kb on + strandat 1568.440 kb on + strandat 1568.441 kb on - strandat 1568.445 kb on - strandat 1568.445 kb on - strandat 1568.445 kb on - strandat 1568.483 kb on + strandat 1568.487 kb on + strandat 1568.647 kb on + strandat 1568.747 kb on - strandat 1568.785 kb on - strand, within EX28DRAFT_1553at 1568.785 kb on - strand, within EX28DRAFT_1553at 1569.005 kb on - strand, within EX28DRAFT_1553at 1569.007 kb on + strand, within EX28DRAFT_1553at 1569.007 kb on + strand, within EX28DRAFT_1553at 1569.008 kb on - strand, within EX28DRAFT_1553at 1569.054 kb on - strand, within EX28DRAFT_1553at 1569.054 kb on - strand, within EX28DRAFT_1553at 1569.065 kb on - strand, within EX28DRAFT_1553at 1569.081 kb on + strand, within EX28DRAFT_1553at 1569.106 kb on + strand, within EX28DRAFT_1553at 1569.107 kb on - strand, within EX28DRAFT_1553at 1569.255 kb on + strand, within EX28DRAFT_1553at 1569.255 kb on + strand, within EX28DRAFT_1553at 1569.255 kb on + strand, within EX28DRAFT_1553at 1569.391 kb on - strand, within EX28DRAFT_1553at 1569.525 kb on - strand, within EX28DRAFT_1553at 1569.531 kb on + strand, within EX28DRAFT_1553at 1569.531 kb on + strand, within EX28DRAFT_1553at 1569.732 kb on + strand, within EX28DRAFT_1553at 1569.767 kb on + strand, within EX28DRAFT_1553at 1569.804 kb on + strandat 1569.865 kb on - strandat 1569.883 kb on + strandat 1569.884 kb on - strandat 1569.981 kb on - strand, within EX28DRAFT_1554at 1569.997 kb on - strand, within EX28DRAFT_1554at 1569.997 kb on - strand, within EX28DRAFT_1554at 1570.035 kb on - strand, within EX28DRAFT_1554at 1570.112 kb on - strand, within EX28DRAFT_1554at 1570.182 kb on + strand, within EX28DRAFT_1554at 1570.182 kb on + strand, within EX28DRAFT_1554at 1570.183 kb on - strand, within EX28DRAFT_1554at 1570.239 kb on + strand, within EX28DRAFT_1554at 1570.274 kb on + strand, within EX28DRAFT_1554at 1570.366 kb on - strandat 1570.382 kb on + strandat 1570.441 kb on + strandat 1570.441 kb on + strandat 1570.485 kb on + strandat 1570.486 kb on - strandat 1570.500 kb on + strandat 1570.500 kb on + strandat 1570.501 kb on - strandat 1570.533 kb on + strandat 1570.533 kb on + strandat 1570.534 kb on - strandat 1570.534 kb on - strandat 1570.560 kb on - strandat 1570.667 kb on + strandat 1570.682 kb on + strandat 1570.683 kb on - strandat 1570.683 kb on - strandat 1570.683 kb on - strandat 1570.743 kb on + strand, within EX28DRAFT_1555at 1570.782 kb on + strand, within EX28DRAFT_1555at 1570.820 kb on - strand, within EX28DRAFT_1555at 1570.825 kb on + strand, within EX28DRAFT_1555at 1570.825 kb on + strand, within EX28DRAFT_1555at 1570.825 kb on + strand, within EX28DRAFT_1555at 1570.825 kb on + strand, within EX28DRAFT_1555at 1570.826 kb on - strand, within EX28DRAFT_1555at 1570.879 kb on + strand, within EX28DRAFT_1555at 1570.883 kb on + strand, within EX28DRAFT_1555at 1570.884 kb on - strand, within EX28DRAFT_1555at 1570.884 kb on - strand, within EX28DRAFT_1555at 1570.902 kb on - strand, within EX28DRAFT_1555at 1570.913 kb on + strand, within EX28DRAFT_1555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
1,568,155 - -1.0
1,568,383 - +0.0
1,568,440 + +0.2
1,568,440 + -0.7
1,568,441 - -1.1
1,568,445 - -0.4
1,568,445 - +0.7
1,568,445 - +0.7
1,568,483 + -0.3
1,568,487 + +0.8
1,568,647 + -0.9
1,568,747 - +0.3
1,568,785 - EX28DRAFT_1553 0.11 +1.4
1,568,785 - EX28DRAFT_1553 0.11 -1.1
1,569,005 - EX28DRAFT_1553 0.28 -1.3
1,569,007 + EX28DRAFT_1553 0.28 +0.4
1,569,007 + EX28DRAFT_1553 0.28 +0.4
1,569,008 - EX28DRAFT_1553 0.29 -0.0
1,569,054 - EX28DRAFT_1553 0.32 -0.0
1,569,054 - EX28DRAFT_1553 0.32 +0.1
1,569,065 - EX28DRAFT_1553 0.33 -1.8
1,569,081 + EX28DRAFT_1553 0.34 -0.3
1,569,106 + EX28DRAFT_1553 0.36 -0.0
1,569,107 - EX28DRAFT_1553 0.36 +0.2
1,569,255 + EX28DRAFT_1553 0.48 -1.3
1,569,255 + EX28DRAFT_1553 0.48 -0.5
1,569,255 + EX28DRAFT_1553 0.48 +0.0
1,569,391 - EX28DRAFT_1553 0.59 -0.4
1,569,525 - EX28DRAFT_1553 0.69 +0.4
1,569,531 + EX28DRAFT_1553 0.70 +0.2
1,569,531 + EX28DRAFT_1553 0.70 -0.0
1,569,732 + EX28DRAFT_1553 0.86 +0.6
1,569,767 + EX28DRAFT_1553 0.88 -0.2
1,569,804 + -1.0
1,569,865 - -0.3
1,569,883 + +0.1
1,569,884 - +0.2
1,569,981 - EX28DRAFT_1554 0.15 -1.1
1,569,997 - EX28DRAFT_1554 0.19 +0.4
1,569,997 - EX28DRAFT_1554 0.19 +0.1
1,570,035 - EX28DRAFT_1554 0.28 -0.2
1,570,112 - EX28DRAFT_1554 0.46 -0.7
1,570,182 + EX28DRAFT_1554 0.63 -0.2
1,570,182 + EX28DRAFT_1554 0.63 +0.4
1,570,183 - EX28DRAFT_1554 0.63 +0.0
1,570,239 + EX28DRAFT_1554 0.77 +0.5
1,570,274 + EX28DRAFT_1554 0.85 +0.2
1,570,366 - +0.2
1,570,382 + +0.3
1,570,441 + -0.5
1,570,441 + +0.4
1,570,485 + +2.1
1,570,486 - -0.1
1,570,500 + -0.4
1,570,500 + -0.1
1,570,501 - -1.5
1,570,533 + +0.4
1,570,533 + -0.6
1,570,534 - -0.2
1,570,534 - -0.4
1,570,560 - -0.4
1,570,667 + +0.2
1,570,682 + -0.5
1,570,683 - -1.2
1,570,683 - +1.6
1,570,683 - -0.2
1,570,743 + EX28DRAFT_1555 0.13 +0.3
1,570,782 + EX28DRAFT_1555 0.15 +0.6
1,570,820 - EX28DRAFT_1555 0.18 +0.2
1,570,825 + EX28DRAFT_1555 0.18 +0.6
1,570,825 + EX28DRAFT_1555 0.18 +0.3
1,570,825 + EX28DRAFT_1555 0.18 -0.0
1,570,825 + EX28DRAFT_1555 0.18 +0.5
1,570,826 - EX28DRAFT_1555 0.19 -0.4
1,570,879 + EX28DRAFT_1555 0.22 -0.3
1,570,883 + EX28DRAFT_1555 0.23 -0.1
1,570,884 - EX28DRAFT_1555 0.23 +0.4
1,570,884 - EX28DRAFT_1555 0.23 -1.2
1,570,902 - EX28DRAFT_1555 0.24 +1.0
1,570,913 + EX28DRAFT_1555 0.25 +0.1

Or see this region's nucleotide sequence