Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1552 and EX28DRAFT_1553 are separated by 916 nucleotides EX28DRAFT_1553 and EX28DRAFT_1554 are separated by 2 nucleotides EX28DRAFT_1554 and EX28DRAFT_1555 are separated by 229 nucleotides
EX28DRAFT_1552: EX28DRAFT_1552 - Uncharacterized conserved protein, at 1,567,052 to 1,567,729
_1552
EX28DRAFT_1553: EX28DRAFT_1553 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,568,646 to 1,569,914
_1553
EX28DRAFT_1554: EX28DRAFT_1554 - Peptidase S24-like, at 1,569,917 to 1,570,336
_1554
EX28DRAFT_1555: EX28DRAFT_1555 - Chaperone of endosialidase, at 1,570,566 to 1,571,966
_1555
Position (kb)
1568
1569
1570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1568.155 kb on - strand at 1568.383 kb on - strand at 1568.440 kb on + strand at 1568.440 kb on + strand at 1568.441 kb on - strand at 1568.445 kb on - strand at 1568.445 kb on - strand at 1568.445 kb on - strand at 1568.483 kb on + strand at 1568.487 kb on + strand at 1568.647 kb on + strand at 1568.747 kb on - strand at 1568.785 kb on - strand, within EX28DRAFT_1553 at 1568.785 kb on - strand, within EX28DRAFT_1553 at 1569.005 kb on - strand, within EX28DRAFT_1553 at 1569.007 kb on + strand, within EX28DRAFT_1553 at 1569.007 kb on + strand, within EX28DRAFT_1553 at 1569.008 kb on - strand, within EX28DRAFT_1553 at 1569.054 kb on - strand, within EX28DRAFT_1553 at 1569.054 kb on - strand, within EX28DRAFT_1553 at 1569.065 kb on - strand, within EX28DRAFT_1553 at 1569.081 kb on + strand, within EX28DRAFT_1553 at 1569.106 kb on + strand, within EX28DRAFT_1553 at 1569.107 kb on - strand, within EX28DRAFT_1553 at 1569.255 kb on + strand, within EX28DRAFT_1553 at 1569.255 kb on + strand, within EX28DRAFT_1553 at 1569.255 kb on + strand, within EX28DRAFT_1553 at 1569.391 kb on - strand, within EX28DRAFT_1553 at 1569.525 kb on - strand, within EX28DRAFT_1553 at 1569.531 kb on + strand, within EX28DRAFT_1553 at 1569.531 kb on + strand, within EX28DRAFT_1553 at 1569.732 kb on + strand, within EX28DRAFT_1553 at 1569.767 kb on + strand, within EX28DRAFT_1553 at 1569.804 kb on + strand at 1569.865 kb on - strand at 1569.883 kb on + strand at 1569.884 kb on - strand at 1569.981 kb on - strand, within EX28DRAFT_1554 at 1569.997 kb on - strand, within EX28DRAFT_1554 at 1569.997 kb on - strand, within EX28DRAFT_1554 at 1570.035 kb on - strand, within EX28DRAFT_1554 at 1570.112 kb on - strand, within EX28DRAFT_1554 at 1570.182 kb on + strand, within EX28DRAFT_1554 at 1570.182 kb on + strand, within EX28DRAFT_1554 at 1570.183 kb on - strand, within EX28DRAFT_1554 at 1570.239 kb on + strand, within EX28DRAFT_1554 at 1570.274 kb on + strand, within EX28DRAFT_1554 at 1570.366 kb on - strand at 1570.382 kb on + strand at 1570.441 kb on + strand at 1570.441 kb on + strand at 1570.485 kb on + strand at 1570.486 kb on - strand at 1570.500 kb on + strand at 1570.500 kb on + strand at 1570.501 kb on - strand at 1570.533 kb on + strand at 1570.533 kb on + strand at 1570.534 kb on - strand at 1570.534 kb on - strand at 1570.560 kb on - strand at 1570.667 kb on + strand at 1570.682 kb on + strand at 1570.683 kb on - strand at 1570.683 kb on - strand at 1570.683 kb on - strand at 1570.743 kb on + strand, within EX28DRAFT_1555 at 1570.782 kb on + strand, within EX28DRAFT_1555 at 1570.820 kb on - strand, within EX28DRAFT_1555 at 1570.825 kb on + strand, within EX28DRAFT_1555 at 1570.825 kb on + strand, within EX28DRAFT_1555 at 1570.825 kb on + strand, within EX28DRAFT_1555 at 1570.825 kb on + strand, within EX28DRAFT_1555 at 1570.826 kb on - strand, within EX28DRAFT_1555 at 1570.879 kb on + strand, within EX28DRAFT_1555 at 1570.883 kb on + strand, within EX28DRAFT_1555 at 1570.884 kb on - strand, within EX28DRAFT_1555 at 1570.884 kb on - strand, within EX28DRAFT_1555 at 1570.902 kb on - strand, within EX28DRAFT_1555 at 1570.913 kb on + strand, within EX28DRAFT_1555
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,568,155 - -1.0 1,568,383 - +0.0 1,568,440 + +0.2 1,568,440 + -0.7 1,568,441 - -1.1 1,568,445 - -0.4 1,568,445 - +0.7 1,568,445 - +0.7 1,568,483 + -0.3 1,568,487 + +0.8 1,568,647 + -0.9 1,568,747 - +0.3 1,568,785 - EX28DRAFT_1553 0.11 +1.4 1,568,785 - EX28DRAFT_1553 0.11 -1.1 1,569,005 - EX28DRAFT_1553 0.28 -1.3 1,569,007 + EX28DRAFT_1553 0.28 +0.4 1,569,007 + EX28DRAFT_1553 0.28 +0.4 1,569,008 - EX28DRAFT_1553 0.29 -0.0 1,569,054 - EX28DRAFT_1553 0.32 -0.0 1,569,054 - EX28DRAFT_1553 0.32 +0.1 1,569,065 - EX28DRAFT_1553 0.33 -1.8 1,569,081 + EX28DRAFT_1553 0.34 -0.3 1,569,106 + EX28DRAFT_1553 0.36 -0.0 1,569,107 - EX28DRAFT_1553 0.36 +0.2 1,569,255 + EX28DRAFT_1553 0.48 -1.3 1,569,255 + EX28DRAFT_1553 0.48 -0.5 1,569,255 + EX28DRAFT_1553 0.48 +0.0 1,569,391 - EX28DRAFT_1553 0.59 -0.4 1,569,525 - EX28DRAFT_1553 0.69 +0.4 1,569,531 + EX28DRAFT_1553 0.70 +0.2 1,569,531 + EX28DRAFT_1553 0.70 -0.0 1,569,732 + EX28DRAFT_1553 0.86 +0.6 1,569,767 + EX28DRAFT_1553 0.88 -0.2 1,569,804 + -1.0 1,569,865 - -0.3 1,569,883 + +0.1 1,569,884 - +0.2 1,569,981 - EX28DRAFT_1554 0.15 -1.1 1,569,997 - EX28DRAFT_1554 0.19 +0.4 1,569,997 - EX28DRAFT_1554 0.19 +0.1 1,570,035 - EX28DRAFT_1554 0.28 -0.2 1,570,112 - EX28DRAFT_1554 0.46 -0.7 1,570,182 + EX28DRAFT_1554 0.63 -0.2 1,570,182 + EX28DRAFT_1554 0.63 +0.4 1,570,183 - EX28DRAFT_1554 0.63 +0.0 1,570,239 + EX28DRAFT_1554 0.77 +0.5 1,570,274 + EX28DRAFT_1554 0.85 +0.2 1,570,366 - +0.2 1,570,382 + +0.3 1,570,441 + -0.5 1,570,441 + +0.4 1,570,485 + +2.1 1,570,486 - -0.1 1,570,500 + -0.4 1,570,500 + -0.1 1,570,501 - -1.5 1,570,533 + +0.4 1,570,533 + -0.6 1,570,534 - -0.2 1,570,534 - -0.4 1,570,560 - -0.4 1,570,667 + +0.2 1,570,682 + -0.5 1,570,683 - -1.2 1,570,683 - +1.6 1,570,683 - -0.2 1,570,743 + EX28DRAFT_1555 0.13 +0.3 1,570,782 + EX28DRAFT_1555 0.15 +0.6 1,570,820 - EX28DRAFT_1555 0.18 +0.2 1,570,825 + EX28DRAFT_1555 0.18 +0.6 1,570,825 + EX28DRAFT_1555 0.18 +0.3 1,570,825 + EX28DRAFT_1555 0.18 -0.0 1,570,825 + EX28DRAFT_1555 0.18 +0.5 1,570,826 - EX28DRAFT_1555 0.19 -0.4 1,570,879 + EX28DRAFT_1555 0.22 -0.3 1,570,883 + EX28DRAFT_1555 0.23 -0.1 1,570,884 - EX28DRAFT_1555 0.23 +0.4 1,570,884 - EX28DRAFT_1555 0.23 -1.2 1,570,902 - EX28DRAFT_1555 0.24 +1.0 1,570,913 + EX28DRAFT_1555 0.25 +0.1
Or see this region's nucleotide sequence