Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1531 and EX28DRAFT_1532 are separated by 143 nucleotides EX28DRAFT_1532 and EX28DRAFT_1533 are separated by 27 nucleotides EX28DRAFT_1533 and EX28DRAFT_1534 are separated by 214 nucleotides EX28DRAFT_1534 and EX28DRAFT_1535 overlap by 20 nucleotides
EX28DRAFT_1531: EX28DRAFT_1531 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 1,545,634 to 1,546,500
_1531
EX28DRAFT_1532: EX28DRAFT_1532 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,546,644 to 1,548,305
_1532
EX28DRAFT_1533: EX28DRAFT_1533 - Uncharacterized protein conserved in bacteria, at 1,548,333 to 1,548,896
_1533
EX28DRAFT_1534: EX28DRAFT_1534 - RNA, at 1,549,111 to 1,549,270
_1534
EX28DRAFT_1535: EX28DRAFT_1535 - Transcriptional regulator, at 1,549,251 to 1,550,162
_1535
Position (kb)
1546
1547
1548
1549 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1545.846 kb on + strand, within EX28DRAFT_1531 at 1545.875 kb on + strand, within EX28DRAFT_1531 at 1545.876 kb on - strand, within EX28DRAFT_1531 at 1545.876 kb on - strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.939 kb on - strand, within EX28DRAFT_1531 at 1545.939 kb on - strand, within EX28DRAFT_1531 at 1546.042 kb on + strand, within EX28DRAFT_1531 at 1546.327 kb on - strand, within EX28DRAFT_1531 at 1546.436 kb on + strand at 1546.473 kb on - strand at 1546.486 kb on - strand at 1546.558 kb on + strand at 1546.574 kb on - strand at 1546.577 kb on + strand at 1546.578 kb on - strand at 1546.578 kb on - strand at 1546.591 kb on + strand at 1546.602 kb on - strand at 1546.604 kb on + strand at 1546.612 kb on + strand at 1546.676 kb on + strand at 1546.693 kb on + strand at 1546.693 kb on + strand at 1546.694 kb on - strand at 1546.732 kb on - strand at 1546.732 kb on - strand at 1546.757 kb on + strand at 1547.085 kb on + strand, within EX28DRAFT_1532 at 1547.086 kb on - strand, within EX28DRAFT_1532 at 1547.143 kb on - strand, within EX28DRAFT_1532 at 1547.143 kb on - strand, within EX28DRAFT_1532 at 1547.327 kb on + strand, within EX28DRAFT_1532 at 1547.369 kb on + strand, within EX28DRAFT_1532 at 1547.462 kb on + strand, within EX28DRAFT_1532 at 1547.732 kb on + strand, within EX28DRAFT_1532 at 1547.733 kb on - strand, within EX28DRAFT_1532 at 1548.403 kb on + strand, within EX28DRAFT_1533 at 1548.404 kb on - strand, within EX28DRAFT_1533 at 1548.404 kb on - strand, within EX28DRAFT_1533 at 1548.404 kb on - strand, within EX28DRAFT_1533 at 1548.582 kb on - strand, within EX28DRAFT_1533 at 1548.589 kb on + strand, within EX28DRAFT_1533 at 1548.652 kb on + strand, within EX28DRAFT_1533 at 1548.652 kb on + strand, within EX28DRAFT_1533 at 1548.800 kb on + strand, within EX28DRAFT_1533 at 1548.801 kb on - strand, within EX28DRAFT_1533 at 1548.926 kb on + strand at 1548.927 kb on - strand at 1548.927 kb on - strand at 1548.929 kb on + strand at 1548.930 kb on - strand at 1548.932 kb on - strand at 1548.932 kb on - strand at 1549.001 kb on + strand at 1549.003 kb on + strand at 1549.004 kb on - strand at 1549.004 kb on - strand at 1549.004 kb on - strand at 1549.004 kb on - strand at 1549.006 kb on - strand at 1549.011 kb on - strand at 1549.014 kb on + strand at 1549.089 kb on + strand at 1549.134 kb on + strand, within EX28DRAFT_1534 at 1549.139 kb on - strand, within EX28DRAFT_1534 at 1549.142 kb on + strand, within EX28DRAFT_1534 at 1549.143 kb on - strand, within EX28DRAFT_1534 at 1549.202 kb on + strand, within EX28DRAFT_1534 at 1549.202 kb on + strand, within EX28DRAFT_1534 at 1549.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,545,846 + EX28DRAFT_1531 0.24 +0.9 1,545,875 + EX28DRAFT_1531 0.28 -0.3 1,545,876 - EX28DRAFT_1531 0.28 -0.2 1,545,876 - EX28DRAFT_1531 0.28 -0.5 1,545,938 + EX28DRAFT_1531 0.35 +0.6 1,545,938 + EX28DRAFT_1531 0.35 -0.2 1,545,938 + EX28DRAFT_1531 0.35 -1.0 1,545,938 + EX28DRAFT_1531 0.35 +0.0 1,545,938 + EX28DRAFT_1531 0.35 -0.1 1,545,939 - EX28DRAFT_1531 0.35 +0.1 1,545,939 - EX28DRAFT_1531 0.35 +0.0 1,546,042 + EX28DRAFT_1531 0.47 +0.8 1,546,327 - EX28DRAFT_1531 0.80 -0.2 1,546,436 + -0.0 1,546,473 - -1.1 1,546,486 - +0.0 1,546,558 + +0.2 1,546,574 - +0.8 1,546,577 + -1.4 1,546,578 - +1.1 1,546,578 - +0.4 1,546,591 + -0.4 1,546,602 - -0.2 1,546,604 + +0.0 1,546,612 + +0.8 1,546,676 + +3.1 1,546,693 + -0.1 1,546,693 + -0.2 1,546,694 - -0.2 1,546,732 - +0.1 1,546,732 - +0.3 1,546,757 + -0.1 1,547,085 + EX28DRAFT_1532 0.27 +0.5 1,547,086 - EX28DRAFT_1532 0.27 +0.2 1,547,143 - EX28DRAFT_1532 0.30 -0.9 1,547,143 - EX28DRAFT_1532 0.30 -0.1 1,547,327 + EX28DRAFT_1532 0.41 -0.1 1,547,369 + EX28DRAFT_1532 0.44 -1.0 1,547,462 + EX28DRAFT_1532 0.49 +0.3 1,547,732 + EX28DRAFT_1532 0.65 -0.5 1,547,733 - EX28DRAFT_1532 0.66 -0.1 1,548,403 + EX28DRAFT_1533 0.12 +0.4 1,548,404 - EX28DRAFT_1533 0.13 +0.7 1,548,404 - EX28DRAFT_1533 0.13 +0.9 1,548,404 - EX28DRAFT_1533 0.13 +0.6 1,548,582 - EX28DRAFT_1533 0.44 -0.6 1,548,589 + EX28DRAFT_1533 0.45 +0.4 1,548,652 + EX28DRAFT_1533 0.57 -0.1 1,548,652 + EX28DRAFT_1533 0.57 -0.3 1,548,800 + EX28DRAFT_1533 0.83 -0.4 1,548,801 - EX28DRAFT_1533 0.83 +0.7 1,548,926 + -1.6 1,548,927 - +0.1 1,548,927 - -0.5 1,548,929 + -0.0 1,548,930 - -0.1 1,548,932 - -0.4 1,548,932 - -1.1 1,549,001 + +0.4 1,549,003 + -0.5 1,549,004 - -1.1 1,549,004 - -0.4 1,549,004 - +0.4 1,549,004 - +0.7 1,549,006 - +0.8 1,549,011 - -0.6 1,549,014 + +0.3 1,549,089 + +0.3 1,549,134 + EX28DRAFT_1534 0.14 +0.2 1,549,139 - EX28DRAFT_1534 0.17 +0.3 1,549,142 + EX28DRAFT_1534 0.19 -1.0 1,549,143 - EX28DRAFT_1534 0.20 -0.2 1,549,202 + EX28DRAFT_1534 0.57 -0.4 1,549,202 + EX28DRAFT_1534 0.57 -0.4 1,549,292 + -0.1
Or see this region's nucleotide sequence