Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1520 and EX28DRAFT_1521 are separated by 22 nucleotides EX28DRAFT_1521 and EX28DRAFT_1522 are separated by 96 nucleotides
EX28DRAFT_1520: EX28DRAFT_1520 - Cation/multidrug efflux pump, at 1,533,583 to 1,536,660
_1520
EX28DRAFT_1521: EX28DRAFT_1521 - Arylamine N-acetyltransferase, at 1,536,683 to 1,537,450
_1521
EX28DRAFT_1522: EX28DRAFT_1522 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,537,547 to 1,539,001
_1522
Position (kb)
1536
1537
1538 Strain fitness (log2 ratio)
-1
0
1 at 1535.809 kb on - strand, within EX28DRAFT_1520 at 1535.809 kb on - strand, within EX28DRAFT_1520 at 1536.288 kb on + strand, within EX28DRAFT_1520 at 1536.433 kb on - strand at 1536.539 kb on - strand at 1536.614 kb on + strand at 1536.871 kb on + strand, within EX28DRAFT_1521 at 1536.872 kb on - strand, within EX28DRAFT_1521 at 1536.876 kb on + strand, within EX28DRAFT_1521 at 1536.876 kb on + strand, within EX28DRAFT_1521 at 1536.877 kb on - strand, within EX28DRAFT_1521 at 1536.877 kb on - strand, within EX28DRAFT_1521 at 1536.877 kb on - strand, within EX28DRAFT_1521 at 1536.877 kb on - strand, within EX28DRAFT_1521 at 1536.969 kb on + strand, within EX28DRAFT_1521 at 1537.233 kb on + strand, within EX28DRAFT_1521 at 1537.234 kb on - strand, within EX28DRAFT_1521 at 1537.234 kb on - strand, within EX28DRAFT_1521 at 1537.234 kb on - strand, within EX28DRAFT_1521 at 1537.234 kb on - strand, within EX28DRAFT_1521 at 1537.234 kb on - strand, within EX28DRAFT_1521 at 1537.402 kb on - strand at 1537.484 kb on + strand at 1537.484 kb on + strand at 1537.484 kb on + strand at 1537.484 kb on + strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.485 kb on - strand at 1537.507 kb on + strand at 1537.507 kb on + strand at 1537.508 kb on - strand at 1537.585 kb on + strand at 1537.607 kb on - strand at 1537.613 kb on - strand at 1537.761 kb on - strand, within EX28DRAFT_1522
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,535,809 - EX28DRAFT_1520 0.72 -1.6 1,535,809 - EX28DRAFT_1520 0.72 -0.4 1,536,288 + EX28DRAFT_1520 0.88 +0.2 1,536,433 - -1.0 1,536,539 - -0.0 1,536,614 + -0.0 1,536,871 + EX28DRAFT_1521 0.24 +0.6 1,536,872 - EX28DRAFT_1521 0.25 -0.2 1,536,876 + EX28DRAFT_1521 0.25 -0.8 1,536,876 + EX28DRAFT_1521 0.25 +0.7 1,536,877 - EX28DRAFT_1521 0.25 +0.4 1,536,877 - EX28DRAFT_1521 0.25 -0.4 1,536,877 - EX28DRAFT_1521 0.25 -0.3 1,536,877 - EX28DRAFT_1521 0.25 -0.2 1,536,969 + EX28DRAFT_1521 0.37 -0.0 1,537,233 + EX28DRAFT_1521 0.72 -0.3 1,537,234 - EX28DRAFT_1521 0.72 -0.2 1,537,234 - EX28DRAFT_1521 0.72 -0.6 1,537,234 - EX28DRAFT_1521 0.72 +0.7 1,537,234 - EX28DRAFT_1521 0.72 -1.3 1,537,234 - EX28DRAFT_1521 0.72 -1.5 1,537,402 - +0.2 1,537,484 + -0.2 1,537,484 + -1.1 1,537,484 + -0.1 1,537,484 + +0.2 1,537,485 - +1.0 1,537,485 - -0.1 1,537,485 - -0.0 1,537,485 - +0.8 1,537,485 - -0.5 1,537,485 - -0.3 1,537,485 - +0.7 1,537,507 + +0.1 1,537,507 + +0.2 1,537,508 - +0.0 1,537,585 + +0.5 1,537,607 - -0.1 1,537,613 - -0.4 1,537,761 - EX28DRAFT_1522 0.15 +0.1
Or see this region's nucleotide sequence