Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1521

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1520 and EX28DRAFT_1521 are separated by 22 nucleotidesEX28DRAFT_1521 and EX28DRAFT_1522 are separated by 96 nucleotides EX28DRAFT_1520: EX28DRAFT_1520 - Cation/multidrug efflux pump, at 1,533,583 to 1,536,660 _1520 EX28DRAFT_1521: EX28DRAFT_1521 - Arylamine N-acetyltransferase, at 1,536,683 to 1,537,450 _1521 EX28DRAFT_1522: EX28DRAFT_1522 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,537,547 to 1,539,001 _1522 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -1 0 1at 1535.809 kb on - strand, within EX28DRAFT_1520at 1535.809 kb on - strand, within EX28DRAFT_1520at 1536.288 kb on + strand, within EX28DRAFT_1520at 1536.433 kb on - strandat 1536.539 kb on - strandat 1536.614 kb on + strandat 1536.871 kb on + strand, within EX28DRAFT_1521at 1536.872 kb on - strand, within EX28DRAFT_1521at 1536.876 kb on + strand, within EX28DRAFT_1521at 1536.876 kb on + strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.969 kb on + strand, within EX28DRAFT_1521at 1537.233 kb on + strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.402 kb on - strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.507 kb on + strandat 1537.507 kb on + strandat 1537.508 kb on - strandat 1537.585 kb on + strandat 1537.607 kb on - strandat 1537.613 kb on - strandat 1537.761 kb on - strand, within EX28DRAFT_1522

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,535,809 - EX28DRAFT_1520 0.72 -1.6
1,535,809 - EX28DRAFT_1520 0.72 -0.4
1,536,288 + EX28DRAFT_1520 0.88 +0.2
1,536,433 - -1.0
1,536,539 - -0.0
1,536,614 + -0.0
1,536,871 + EX28DRAFT_1521 0.24 +0.6
1,536,872 - EX28DRAFT_1521 0.25 -0.2
1,536,876 + EX28DRAFT_1521 0.25 -0.8
1,536,876 + EX28DRAFT_1521 0.25 +0.7
1,536,877 - EX28DRAFT_1521 0.25 +0.4
1,536,877 - EX28DRAFT_1521 0.25 -0.4
1,536,877 - EX28DRAFT_1521 0.25 -0.3
1,536,877 - EX28DRAFT_1521 0.25 -0.2
1,536,969 + EX28DRAFT_1521 0.37 -0.0
1,537,233 + EX28DRAFT_1521 0.72 -0.3
1,537,234 - EX28DRAFT_1521 0.72 -0.2
1,537,234 - EX28DRAFT_1521 0.72 -0.6
1,537,234 - EX28DRAFT_1521 0.72 +0.7
1,537,234 - EX28DRAFT_1521 0.72 -1.3
1,537,234 - EX28DRAFT_1521 0.72 -1.5
1,537,402 - +0.2
1,537,484 + -0.2
1,537,484 + -1.1
1,537,484 + -0.1
1,537,484 + +0.2
1,537,485 - +1.0
1,537,485 - -0.1
1,537,485 - -0.0
1,537,485 - +0.8
1,537,485 - -0.5
1,537,485 - -0.3
1,537,485 - +0.7
1,537,507 + +0.1
1,537,507 + +0.2
1,537,508 - +0.0
1,537,585 + +0.5
1,537,607 - -0.1
1,537,613 - -0.4
1,537,761 - EX28DRAFT_1522 0.15 +0.1

Or see this region's nucleotide sequence