Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1484 and EX28DRAFT_1485 are separated by 72 nucleotides EX28DRAFT_1485 and EX28DRAFT_1486 are separated by 101 nucleotides
EX28DRAFT_1484: EX28DRAFT_1484 - Arabinose efflux permease, at 1,498,451 to 1,499,653
_1484
EX28DRAFT_1485: EX28DRAFT_1485 - Glutathione S-transferase, at 1,499,726 to 1,500,349
_1485
EX28DRAFT_1486: EX28DRAFT_1486 - Predicted membrane protein, at 1,500,451 to 1,501,242
_1486
Position (kb)
1499
1500
1501 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1498.772 kb on + strand, within EX28DRAFT_1484 at 1498.772 kb on + strand, within EX28DRAFT_1484 at 1498.773 kb on - strand, within EX28DRAFT_1484 at 1498.773 kb on - strand, within EX28DRAFT_1484 at 1498.782 kb on - strand, within EX28DRAFT_1484 at 1498.782 kb on - strand, within EX28DRAFT_1484 at 1498.813 kb on + strand, within EX28DRAFT_1484 at 1498.814 kb on - strand, within EX28DRAFT_1484 at 1498.816 kb on - strand, within EX28DRAFT_1484 at 1498.816 kb on - strand, within EX28DRAFT_1484 at 1498.946 kb on + strand, within EX28DRAFT_1484 at 1499.054 kb on - strand, within EX28DRAFT_1484 at 1499.089 kb on - strand, within EX28DRAFT_1484 at 1499.161 kb on + strand, within EX28DRAFT_1484 at 1499.165 kb on + strand, within EX28DRAFT_1484 at 1499.166 kb on - strand, within EX28DRAFT_1484 at 1499.485 kb on - strand, within EX28DRAFT_1484 at 1499.509 kb on + strand, within EX28DRAFT_1484 at 1499.541 kb on + strand at 1499.684 kb on - strand at 1500.037 kb on + strand, within EX28DRAFT_1485 at 1500.037 kb on + strand, within EX28DRAFT_1485 at 1500.038 kb on - strand, within EX28DRAFT_1485 at 1500.076 kb on + strand, within EX28DRAFT_1485 at 1500.121 kb on - strand, within EX28DRAFT_1485 at 1500.121 kb on - strand, within EX28DRAFT_1485 at 1500.259 kb on + strand, within EX28DRAFT_1485 at 1500.334 kb on + strand at 1500.345 kb on + strand at 1500.345 kb on + strand at 1500.345 kb on + strand at 1500.346 kb on - strand at 1500.347 kb on + strand at 1500.347 kb on + strand at 1500.347 kb on + strand at 1500.347 kb on + strand at 1500.348 kb on - strand at 1500.348 kb on - strand at 1500.348 kb on - strand at 1500.389 kb on - strand at 1500.424 kb on + strand at 1500.428 kb on + strand at 1500.428 kb on + strand at 1500.475 kb on - strand at 1500.501 kb on - strand at 1500.501 kb on - strand at 1500.538 kb on - strand, within EX28DRAFT_1486 at 1500.691 kb on - strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.752 kb on + strand, within EX28DRAFT_1486 at 1500.753 kb on - strand, within EX28DRAFT_1486 at 1500.838 kb on + strand, within EX28DRAFT_1486 at 1500.839 kb on - strand, within EX28DRAFT_1486 at 1500.839 kb on - strand, within EX28DRAFT_1486 at 1500.847 kb on + strand, within EX28DRAFT_1486 at 1500.848 kb on - strand, within EX28DRAFT_1486 at 1500.990 kb on - strand, within EX28DRAFT_1486 at 1501.030 kb on + strand, within EX28DRAFT_1486 at 1501.030 kb on + strand, within EX28DRAFT_1486 at 1501.077 kb on - strand, within EX28DRAFT_1486 at 1501.238 kb on + strand at 1501.247 kb on - strand at 1501.310 kb on + strand at 1501.343 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,498,772 + EX28DRAFT_1484 0.27 +0.4 1,498,772 + EX28DRAFT_1484 0.27 -0.4 1,498,773 - EX28DRAFT_1484 0.27 -2.3 1,498,773 - EX28DRAFT_1484 0.27 +0.5 1,498,782 - EX28DRAFT_1484 0.28 -0.1 1,498,782 - EX28DRAFT_1484 0.28 -0.4 1,498,813 + EX28DRAFT_1484 0.30 +0.0 1,498,814 - EX28DRAFT_1484 0.30 -0.4 1,498,816 - EX28DRAFT_1484 0.30 -0.5 1,498,816 - EX28DRAFT_1484 0.30 +0.2 1,498,946 + EX28DRAFT_1484 0.41 -0.2 1,499,054 - EX28DRAFT_1484 0.50 -0.3 1,499,089 - EX28DRAFT_1484 0.53 +2.1 1,499,161 + EX28DRAFT_1484 0.59 -0.5 1,499,165 + EX28DRAFT_1484 0.59 -1.2 1,499,166 - EX28DRAFT_1484 0.59 -0.3 1,499,485 - EX28DRAFT_1484 0.86 +2.2 1,499,509 + EX28DRAFT_1484 0.88 +0.5 1,499,541 + +0.8 1,499,684 - +1.0 1,500,037 + EX28DRAFT_1485 0.50 +0.1 1,500,037 + EX28DRAFT_1485 0.50 +1.0 1,500,038 - EX28DRAFT_1485 0.50 -0.0 1,500,076 + EX28DRAFT_1485 0.56 +0.2 1,500,121 - EX28DRAFT_1485 0.63 -2.0 1,500,121 - EX28DRAFT_1485 0.63 +0.8 1,500,259 + EX28DRAFT_1485 0.85 +0.1 1,500,334 + +0.3 1,500,345 + -0.3 1,500,345 + -0.2 1,500,345 + -0.1 1,500,346 - -0.6 1,500,347 + -0.7 1,500,347 + +0.3 1,500,347 + -0.1 1,500,347 + -1.5 1,500,348 - +0.7 1,500,348 - +0.2 1,500,348 - -0.2 1,500,389 - -0.4 1,500,424 + -0.3 1,500,428 + -0.4 1,500,428 + -1.1 1,500,475 - -0.3 1,500,501 - +0.9 1,500,501 - -0.1 1,500,538 - EX28DRAFT_1486 0.11 -0.1 1,500,691 - EX28DRAFT_1486 0.30 +0.2 1,500,752 + EX28DRAFT_1486 0.38 -0.2 1,500,752 + EX28DRAFT_1486 0.38 -0.5 1,500,752 + EX28DRAFT_1486 0.38 -0.5 1,500,752 + EX28DRAFT_1486 0.38 +0.7 1,500,753 - EX28DRAFT_1486 0.38 -0.2 1,500,838 + EX28DRAFT_1486 0.49 -0.2 1,500,839 - EX28DRAFT_1486 0.49 -0.1 1,500,839 - EX28DRAFT_1486 0.49 +0.8 1,500,847 + EX28DRAFT_1486 0.50 -0.6 1,500,848 - EX28DRAFT_1486 0.50 +0.6 1,500,990 - EX28DRAFT_1486 0.68 -0.1 1,501,030 + EX28DRAFT_1486 0.73 +0.2 1,501,030 + EX28DRAFT_1486 0.73 -0.6 1,501,077 - EX28DRAFT_1486 0.79 -0.1 1,501,238 + -0.2 1,501,247 - +0.4 1,501,310 + -0.8 1,501,343 + -0.2
Or see this region's nucleotide sequence