Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1441 and EX28DRAFT_1442 are separated by 378 nucleotides EX28DRAFT_1442 and EX28DRAFT_1443 are separated by 5 nucleotides EX28DRAFT_1443 and EX28DRAFT_1444 are separated by 5 nucleotides
EX28DRAFT_1441: EX28DRAFT_1441 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,451,291 to 1,453,873
_1441
EX28DRAFT_1442: EX28DRAFT_1442 - DNA-binding HTH domain-containing proteins, at 1,454,252 to 1,454,887
_1442
EX28DRAFT_1443: EX28DRAFT_1443 - hypothetical protein, at 1,454,893 to 1,455,576
_1443
EX28DRAFT_1444: EX28DRAFT_1444 - hypothetical protein, at 1,455,582 to 1,457,195
_1444
Position (kb)
1454
1455 Strain fitness (log2 ratio)
-1
0
1 at 1453.265 kb on + strand, within EX28DRAFT_1441 at 1453.266 kb on - strand, within EX28DRAFT_1441 at 1453.267 kb on + strand, within EX28DRAFT_1441 at 1453.418 kb on + strand, within EX28DRAFT_1441 at 1453.548 kb on + strand, within EX28DRAFT_1441 at 1453.558 kb on + strand, within EX28DRAFT_1441 at 1453.611 kb on + strand, within EX28DRAFT_1441 at 1453.612 kb on - strand, within EX28DRAFT_1441 at 1453.612 kb on - strand, within EX28DRAFT_1441 at 1453.612 kb on - strand, within EX28DRAFT_1441 at 1453.612 kb on - strand, within EX28DRAFT_1441 at 1453.795 kb on + strand at 1453.886 kb on + strand at 1454.381 kb on + strand, within EX28DRAFT_1442 at 1454.538 kb on + strand, within EX28DRAFT_1442 at 1454.768 kb on - strand, within EX28DRAFT_1442 at 1454.769 kb on + strand, within EX28DRAFT_1442 at 1454.769 kb on + strand, within EX28DRAFT_1442 at 1454.870 kb on - strand at 1454.873 kb on + strand at 1454.873 kb on + strand at 1454.873 kb on + strand at 1454.878 kb on + strand at 1454.878 kb on + strand at 1454.878 kb on + strand at 1454.945 kb on - strand at 1455.013 kb on - strand, within EX28DRAFT_1443 at 1455.069 kb on + strand, within EX28DRAFT_1443 at 1455.254 kb on + strand, within EX28DRAFT_1443 at 1455.428 kb on - strand, within EX28DRAFT_1443 at 1455.495 kb on - strand, within EX28DRAFT_1443 at 1455.498 kb on + strand, within EX28DRAFT_1443 at 1455.548 kb on - strand at 1455.566 kb on + strand at 1455.576 kb on + strand at 1455.579 kb on + strand at 1455.881 kb on + strand, within EX28DRAFT_1444 at 1455.882 kb on - strand, within EX28DRAFT_1444 at 1455.882 kb on - strand, within EX28DRAFT_1444
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,453,265 + EX28DRAFT_1441 0.76 -0.4 1,453,266 - EX28DRAFT_1441 0.76 +1.4 1,453,267 + EX28DRAFT_1441 0.77 +0.1 1,453,418 + EX28DRAFT_1441 0.82 +0.6 1,453,548 + EX28DRAFT_1441 0.87 +0.8 1,453,558 + EX28DRAFT_1441 0.88 +0.2 1,453,611 + EX28DRAFT_1441 0.90 -0.4 1,453,612 - EX28DRAFT_1441 0.90 +0.7 1,453,612 - EX28DRAFT_1441 0.90 +0.7 1,453,612 - EX28DRAFT_1441 0.90 -0.2 1,453,612 - EX28DRAFT_1441 0.90 +0.1 1,453,795 + +0.6 1,453,886 + -0.4 1,454,381 + EX28DRAFT_1442 0.20 -0.0 1,454,538 + EX28DRAFT_1442 0.45 +0.1 1,454,768 - EX28DRAFT_1442 0.81 +1.7 1,454,769 + EX28DRAFT_1442 0.81 -0.1 1,454,769 + EX28DRAFT_1442 0.81 +1.4 1,454,870 - -0.1 1,454,873 + -0.0 1,454,873 + -0.4 1,454,873 + -0.5 1,454,878 + +0.4 1,454,878 + +0.7 1,454,878 + -0.3 1,454,945 - -0.1 1,455,013 - EX28DRAFT_1443 0.18 +0.7 1,455,069 + EX28DRAFT_1443 0.26 -0.3 1,455,254 + EX28DRAFT_1443 0.53 +0.3 1,455,428 - EX28DRAFT_1443 0.78 -0.3 1,455,495 - EX28DRAFT_1443 0.88 -0.0 1,455,498 + EX28DRAFT_1443 0.88 -0.7 1,455,548 - -0.2 1,455,566 + -0.1 1,455,576 + +0.6 1,455,579 + +0.2 1,455,881 + EX28DRAFT_1444 0.19 -0.3 1,455,882 - EX28DRAFT_1444 0.19 +0.9 1,455,882 - EX28DRAFT_1444 0.19 +0.0
Or see this region's nucleotide sequence