Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1392

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1390 and EX28DRAFT_1391 are separated by 220 nucleotidesEX28DRAFT_1391 and EX28DRAFT_1392 are separated by 74 nucleotidesEX28DRAFT_1392 and EX28DRAFT_1393 overlap by 4 nucleotides EX28DRAFT_1390: EX28DRAFT_1390 - Short-chain dehydrogenases of various substrate specificities, at 1,400,069 to 1,400,863 _1390 EX28DRAFT_1391: EX28DRAFT_1391 - transcriptional regulator, TetR family, at 1,401,084 to 1,401,686 _1391 EX28DRAFT_1392: EX28DRAFT_1392 - RND family efflux transporter, MFP subunit, at 1,401,761 to 1,402,870 _1392 EX28DRAFT_1393: EX28DRAFT_1393 - Cation/multidrug efflux pump, at 1,402,867 to 1,405,956 _1393 Position (kb) 1401 1402 1403Strain fitness (log2 ratio) -2 -1 0 1at 1400.793 kb on + strandat 1400.794 kb on - strandat 1400.794 kb on - strandat 1400.828 kb on - strandat 1400.828 kb on - strandat 1400.862 kb on - strandat 1400.926 kb on + strandat 1400.926 kb on + strandat 1400.927 kb on - strandat 1400.956 kb on - strandat 1400.962 kb on - strandat 1401.070 kb on + strandat 1401.070 kb on + strandat 1401.415 kb on + strand, within EX28DRAFT_1391at 1401.415 kb on + strand, within EX28DRAFT_1391at 1401.418 kb on - strand, within EX28DRAFT_1391at 1401.573 kb on + strand, within EX28DRAFT_1391at 1401.573 kb on + strand, within EX28DRAFT_1391at 1401.574 kb on - strand, within EX28DRAFT_1391at 1401.574 kb on - strand, within EX28DRAFT_1391at 1401.592 kb on - strand, within EX28DRAFT_1391at 1401.593 kb on + strand, within EX28DRAFT_1391at 1401.593 kb on + strand, within EX28DRAFT_1391at 1401.594 kb on - strand, within EX28DRAFT_1391at 1401.594 kb on - strand, within EX28DRAFT_1391at 1401.596 kb on + strand, within EX28DRAFT_1391at 1401.615 kb on + strand, within EX28DRAFT_1391at 1401.616 kb on - strand, within EX28DRAFT_1391at 1401.742 kb on + strandat 1401.829 kb on + strandat 1401.995 kb on - strand, within EX28DRAFT_1392at 1402.520 kb on + strand, within EX28DRAFT_1392at 1402.521 kb on - strand, within EX28DRAFT_1392at 1402.521 kb on - strand, within EX28DRAFT_1392at 1402.521 kb on - strand, within EX28DRAFT_1392at 1402.600 kb on + strand, within EX28DRAFT_1392at 1402.600 kb on + strand, within EX28DRAFT_1392at 1402.601 kb on - strand, within EX28DRAFT_1392at 1402.643 kb on + strand, within EX28DRAFT_1392at 1402.644 kb on - strand, within EX28DRAFT_1392at 1402.644 kb on - strand, within EX28DRAFT_1392at 1402.788 kb on + strandat 1402.789 kb on - strandat 1402.920 kb on + strandat 1402.961 kb on - strandat 1403.110 kb on + strandat 1403.128 kb on + strandat 1403.129 kb on - strandat 1403.129 kb on - strandat 1403.130 kb on + strandat 1403.206 kb on + strand, within EX28DRAFT_1393at 1403.206 kb on + strand, within EX28DRAFT_1393at 1403.437 kb on + strand, within EX28DRAFT_1393at 1403.437 kb on + strand, within EX28DRAFT_1393at 1403.437 kb on + strand, within EX28DRAFT_1393at 1403.438 kb on - strand, within EX28DRAFT_1393at 1403.438 kb on - strand, within EX28DRAFT_1393at 1403.438 kb on - strand, within EX28DRAFT_1393at 1403.619 kb on + strand, within EX28DRAFT_1393at 1403.619 kb on + strand, within EX28DRAFT_1393at 1403.619 kb on + strand, within EX28DRAFT_1393at 1403.620 kb on - strand, within EX28DRAFT_1393at 1403.620 kb on - strand, within EX28DRAFT_1393

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,400,793 + -0.4
1,400,794 - +1.6
1,400,794 - +0.4
1,400,828 - -0.1
1,400,828 - +0.1
1,400,862 - +0.2
1,400,926 + +0.2
1,400,926 + -0.1
1,400,927 - +0.9
1,400,956 - -0.0
1,400,962 - -0.2
1,401,070 + +1.0
1,401,070 + +0.1
1,401,415 + EX28DRAFT_1391 0.55 -0.7
1,401,415 + EX28DRAFT_1391 0.55 -1.3
1,401,418 - EX28DRAFT_1391 0.55 -0.3
1,401,573 + EX28DRAFT_1391 0.81 -0.8
1,401,573 + EX28DRAFT_1391 0.81 +0.4
1,401,574 - EX28DRAFT_1391 0.81 -0.1
1,401,574 - EX28DRAFT_1391 0.81 -0.2
1,401,592 - EX28DRAFT_1391 0.84 -1.8
1,401,593 + EX28DRAFT_1391 0.84 +0.4
1,401,593 + EX28DRAFT_1391 0.84 +0.6
1,401,594 - EX28DRAFT_1391 0.85 +0.1
1,401,594 - EX28DRAFT_1391 0.85 -1.2
1,401,596 + EX28DRAFT_1391 0.85 -0.2
1,401,615 + EX28DRAFT_1391 0.88 -1.9
1,401,616 - EX28DRAFT_1391 0.88 -0.9
1,401,742 + +0.8
1,401,829 + -0.2
1,401,995 - EX28DRAFT_1392 0.21 -0.7
1,402,520 + EX28DRAFT_1392 0.68 -0.3
1,402,521 - EX28DRAFT_1392 0.68 -0.6
1,402,521 - EX28DRAFT_1392 0.68 -0.6
1,402,521 - EX28DRAFT_1392 0.68 -1.7
1,402,600 + EX28DRAFT_1392 0.76 -0.3
1,402,600 + EX28DRAFT_1392 0.76 -0.4
1,402,601 - EX28DRAFT_1392 0.76 +0.1
1,402,643 + EX28DRAFT_1392 0.79 -0.1
1,402,644 - EX28DRAFT_1392 0.80 -0.1
1,402,644 - EX28DRAFT_1392 0.80 -0.5
1,402,788 + -0.5
1,402,789 - +0.2
1,402,920 + +0.2
1,402,961 - +0.0
1,403,110 + -0.1
1,403,128 + -0.4
1,403,129 - -0.1
1,403,129 - -0.6
1,403,130 + -0.0
1,403,206 + EX28DRAFT_1393 0.11 -0.0
1,403,206 + EX28DRAFT_1393 0.11 -0.3
1,403,437 + EX28DRAFT_1393 0.18 -0.4
1,403,437 + EX28DRAFT_1393 0.18 -1.0
1,403,437 + EX28DRAFT_1393 0.18 -0.6
1,403,438 - EX28DRAFT_1393 0.18 -0.1
1,403,438 - EX28DRAFT_1393 0.18 +1.1
1,403,438 - EX28DRAFT_1393 0.18 -0.1
1,403,619 + EX28DRAFT_1393 0.24 +0.4
1,403,619 + EX28DRAFT_1393 0.24 -0.4
1,403,619 + EX28DRAFT_1393 0.24 -0.1
1,403,620 - EX28DRAFT_1393 0.24 -0.2
1,403,620 - EX28DRAFT_1393 0.24 -0.5

Or see this region's nucleotide sequence