Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1390 and EX28DRAFT_1391 are separated by 220 nucleotides EX28DRAFT_1391 and EX28DRAFT_1392 are separated by 74 nucleotides EX28DRAFT_1392 and EX28DRAFT_1393 overlap by 4 nucleotides
EX28DRAFT_1390: EX28DRAFT_1390 - Short-chain dehydrogenases of various substrate specificities, at 1,400,069 to 1,400,863
_1390
EX28DRAFT_1391: EX28DRAFT_1391 - transcriptional regulator, TetR family, at 1,401,084 to 1,401,686
_1391
EX28DRAFT_1392: EX28DRAFT_1392 - RND family efflux transporter, MFP subunit, at 1,401,761 to 1,402,870
_1392
EX28DRAFT_1393: EX28DRAFT_1393 - Cation/multidrug efflux pump, at 1,402,867 to 1,405,956
_1393
Position (kb)
1401
1402
1403 Strain fitness (log2 ratio)
-2
-1
0
1 at 1400.793 kb on + strand at 1400.794 kb on - strand at 1400.794 kb on - strand at 1400.828 kb on - strand at 1400.828 kb on - strand at 1400.862 kb on - strand at 1400.926 kb on + strand at 1400.926 kb on + strand at 1400.927 kb on - strand at 1400.956 kb on - strand at 1400.962 kb on - strand at 1401.070 kb on + strand at 1401.070 kb on + strand at 1401.415 kb on + strand, within EX28DRAFT_1391 at 1401.415 kb on + strand, within EX28DRAFT_1391 at 1401.418 kb on - strand, within EX28DRAFT_1391 at 1401.573 kb on + strand, within EX28DRAFT_1391 at 1401.573 kb on + strand, within EX28DRAFT_1391 at 1401.574 kb on - strand, within EX28DRAFT_1391 at 1401.574 kb on - strand, within EX28DRAFT_1391 at 1401.592 kb on - strand, within EX28DRAFT_1391 at 1401.593 kb on + strand, within EX28DRAFT_1391 at 1401.593 kb on + strand, within EX28DRAFT_1391 at 1401.594 kb on - strand, within EX28DRAFT_1391 at 1401.594 kb on - strand, within EX28DRAFT_1391 at 1401.596 kb on + strand, within EX28DRAFT_1391 at 1401.615 kb on + strand, within EX28DRAFT_1391 at 1401.616 kb on - strand, within EX28DRAFT_1391 at 1401.742 kb on + strand at 1401.829 kb on + strand at 1401.995 kb on - strand, within EX28DRAFT_1392 at 1402.520 kb on + strand, within EX28DRAFT_1392 at 1402.521 kb on - strand, within EX28DRAFT_1392 at 1402.521 kb on - strand, within EX28DRAFT_1392 at 1402.521 kb on - strand, within EX28DRAFT_1392 at 1402.600 kb on + strand, within EX28DRAFT_1392 at 1402.600 kb on + strand, within EX28DRAFT_1392 at 1402.601 kb on - strand, within EX28DRAFT_1392 at 1402.643 kb on + strand, within EX28DRAFT_1392 at 1402.644 kb on - strand, within EX28DRAFT_1392 at 1402.644 kb on - strand, within EX28DRAFT_1392 at 1402.788 kb on + strand at 1402.789 kb on - strand at 1402.920 kb on + strand at 1402.961 kb on - strand at 1403.110 kb on + strand at 1403.128 kb on + strand at 1403.129 kb on - strand at 1403.129 kb on - strand at 1403.130 kb on + strand at 1403.206 kb on + strand, within EX28DRAFT_1393 at 1403.206 kb on + strand, within EX28DRAFT_1393 at 1403.437 kb on + strand, within EX28DRAFT_1393 at 1403.437 kb on + strand, within EX28DRAFT_1393 at 1403.437 kb on + strand, within EX28DRAFT_1393 at 1403.438 kb on - strand, within EX28DRAFT_1393 at 1403.438 kb on - strand, within EX28DRAFT_1393 at 1403.438 kb on - strand, within EX28DRAFT_1393 at 1403.619 kb on + strand, within EX28DRAFT_1393 at 1403.619 kb on + strand, within EX28DRAFT_1393 at 1403.619 kb on + strand, within EX28DRAFT_1393 at 1403.620 kb on - strand, within EX28DRAFT_1393 at 1403.620 kb on - strand, within EX28DRAFT_1393
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,400,793 + -0.4 1,400,794 - +1.6 1,400,794 - +0.4 1,400,828 - -0.1 1,400,828 - +0.1 1,400,862 - +0.2 1,400,926 + +0.2 1,400,926 + -0.1 1,400,927 - +0.9 1,400,956 - -0.0 1,400,962 - -0.2 1,401,070 + +1.0 1,401,070 + +0.1 1,401,415 + EX28DRAFT_1391 0.55 -0.7 1,401,415 + EX28DRAFT_1391 0.55 -1.3 1,401,418 - EX28DRAFT_1391 0.55 -0.3 1,401,573 + EX28DRAFT_1391 0.81 -0.8 1,401,573 + EX28DRAFT_1391 0.81 +0.4 1,401,574 - EX28DRAFT_1391 0.81 -0.1 1,401,574 - EX28DRAFT_1391 0.81 -0.2 1,401,592 - EX28DRAFT_1391 0.84 -1.8 1,401,593 + EX28DRAFT_1391 0.84 +0.4 1,401,593 + EX28DRAFT_1391 0.84 +0.6 1,401,594 - EX28DRAFT_1391 0.85 +0.1 1,401,594 - EX28DRAFT_1391 0.85 -1.2 1,401,596 + EX28DRAFT_1391 0.85 -0.2 1,401,615 + EX28DRAFT_1391 0.88 -1.9 1,401,616 - EX28DRAFT_1391 0.88 -0.9 1,401,742 + +0.8 1,401,829 + -0.2 1,401,995 - EX28DRAFT_1392 0.21 -0.7 1,402,520 + EX28DRAFT_1392 0.68 -0.3 1,402,521 - EX28DRAFT_1392 0.68 -0.6 1,402,521 - EX28DRAFT_1392 0.68 -0.6 1,402,521 - EX28DRAFT_1392 0.68 -1.7 1,402,600 + EX28DRAFT_1392 0.76 -0.3 1,402,600 + EX28DRAFT_1392 0.76 -0.4 1,402,601 - EX28DRAFT_1392 0.76 +0.1 1,402,643 + EX28DRAFT_1392 0.79 -0.1 1,402,644 - EX28DRAFT_1392 0.80 -0.1 1,402,644 - EX28DRAFT_1392 0.80 -0.5 1,402,788 + -0.5 1,402,789 - +0.2 1,402,920 + +0.2 1,402,961 - +0.0 1,403,110 + -0.1 1,403,128 + -0.4 1,403,129 - -0.1 1,403,129 - -0.6 1,403,130 + -0.0 1,403,206 + EX28DRAFT_1393 0.11 -0.0 1,403,206 + EX28DRAFT_1393 0.11 -0.3 1,403,437 + EX28DRAFT_1393 0.18 -0.4 1,403,437 + EX28DRAFT_1393 0.18 -1.0 1,403,437 + EX28DRAFT_1393 0.18 -0.6 1,403,438 - EX28DRAFT_1393 0.18 -0.1 1,403,438 - EX28DRAFT_1393 0.18 +1.1 1,403,438 - EX28DRAFT_1393 0.18 -0.1 1,403,619 + EX28DRAFT_1393 0.24 +0.4 1,403,619 + EX28DRAFT_1393 0.24 -0.4 1,403,619 + EX28DRAFT_1393 0.24 -0.1 1,403,620 - EX28DRAFT_1393 0.24 -0.2 1,403,620 - EX28DRAFT_1393 0.24 -0.5
Or see this region's nucleotide sequence