Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1354

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1353 and EX28DRAFT_1354 are separated by 22 nucleotidesEX28DRAFT_1354 and EX28DRAFT_1355 overlap by 4 nucleotides EX28DRAFT_1353: EX28DRAFT_1353 - Major Facilitator Superfamily, at 1,367,866 to 1,369,518 _1353 EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623 _1354 EX28DRAFT_1355: EX28DRAFT_1355 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,370,620 to 1,371,999 _1355 Position (kb) 1369 1370 1371Strain fitness (log2 ratio) -1 0 1 2at 1369.032 kb on - strand, within EX28DRAFT_1353at 1369.289 kb on - strand, within EX28DRAFT_1353at 1369.291 kb on - strand, within EX28DRAFT_1353at 1369.301 kb on - strand, within EX28DRAFT_1353at 1369.401 kb on + strandat 1369.402 kb on - strandat 1369.402 kb on - strandat 1369.406 kb on - strandat 1369.406 kb on - strandat 1369.516 kb on + strandat 1369.516 kb on + strandat 1369.517 kb on - strandat 1369.541 kb on - strandat 1369.627 kb on + strandat 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.752 kb on - strand, within EX28DRAFT_1354at 1369.754 kb on - strand, within EX28DRAFT_1354at 1369.782 kb on + strand, within EX28DRAFT_1354at 1369.783 kb on - strand, within EX28DRAFT_1354at 1369.825 kb on + strand, within EX28DRAFT_1354at 1369.826 kb on - strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.829 kb on + strand, within EX28DRAFT_1354at 1369.906 kb on + strand, within EX28DRAFT_1354at 1369.989 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.133 kb on + strand, within EX28DRAFT_1354at 1370.417 kb on + strand, within EX28DRAFT_1354at 1370.688 kb on - strandat 1370.688 kb on - strandat 1370.867 kb on - strand, within EX28DRAFT_1355at 1370.867 kb on - strand, within EX28DRAFT_1355at 1371.011 kb on - strand, within EX28DRAFT_1355at 1371.208 kb on - strand, within EX28DRAFT_1355at 1371.257 kb on + strand, within EX28DRAFT_1355at 1371.258 kb on - strand, within EX28DRAFT_1355

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,369,032 - EX28DRAFT_1353 0.71 +0.2
1,369,289 - EX28DRAFT_1353 0.86 +0.6
1,369,291 - EX28DRAFT_1353 0.86 -0.3
1,369,301 - EX28DRAFT_1353 0.87 -0.4
1,369,401 + +0.8
1,369,402 - -0.3
1,369,402 - -0.6
1,369,406 - +0.0
1,369,406 - +0.2
1,369,516 + -0.2
1,369,516 + -0.2
1,369,517 - -0.3
1,369,541 - +0.3
1,369,627 + +0.8
1,369,752 - EX28DRAFT_1354 0.19 +0.0
1,369,752 - EX28DRAFT_1354 0.19 +0.1
1,369,752 - EX28DRAFT_1354 0.19 +1.2
1,369,754 - EX28DRAFT_1354 0.20 -0.5
1,369,782 + EX28DRAFT_1354 0.22 +1.0
1,369,783 - EX28DRAFT_1354 0.22 +0.1
1,369,825 + EX28DRAFT_1354 0.26 +0.7
1,369,826 - EX28DRAFT_1354 0.26 -0.1
1,369,829 + EX28DRAFT_1354 0.27 +0.7
1,369,829 + EX28DRAFT_1354 0.27 -0.0
1,369,829 + EX28DRAFT_1354 0.27 +0.7
1,369,906 + EX28DRAFT_1354 0.34 -0.4
1,369,989 + EX28DRAFT_1354 0.41 -0.3
1,370,133 + EX28DRAFT_1354 0.55 -0.0
1,370,133 + EX28DRAFT_1354 0.55 -0.1
1,370,133 + EX28DRAFT_1354 0.55 +0.3
1,370,417 + EX28DRAFT_1354 0.81 -0.1
1,370,688 - +1.4
1,370,688 - -0.7
1,370,867 - EX28DRAFT_1355 0.18 +0.1
1,370,867 - EX28DRAFT_1355 0.18 -0.4
1,371,011 - EX28DRAFT_1355 0.28 +0.6
1,371,208 - EX28DRAFT_1355 0.43 +2.1
1,371,257 + EX28DRAFT_1355 0.46 +0.4
1,371,258 - EX28DRAFT_1355 0.46 +0.2

Or see this region's nucleotide sequence