Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1353 and EX28DRAFT_1354 are separated by 22 nucleotides EX28DRAFT_1354 and EX28DRAFT_1355 overlap by 4 nucleotides
EX28DRAFT_1353: EX28DRAFT_1353 - Major Facilitator Superfamily, at 1,367,866 to 1,369,518
_1353
EX28DRAFT_1354: EX28DRAFT_1354 - Multidrug resistance efflux pump, at 1,369,541 to 1,370,623
_1354
EX28DRAFT_1355: EX28DRAFT_1355 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,370,620 to 1,371,999
_1355
Position (kb)
1369
1370
1371 Strain fitness (log2 ratio)
-1
0
1
2 at 1369.032 kb on - strand, within EX28DRAFT_1353 at 1369.289 kb on - strand, within EX28DRAFT_1353 at 1369.291 kb on - strand, within EX28DRAFT_1353 at 1369.301 kb on - strand, within EX28DRAFT_1353 at 1369.401 kb on + strand at 1369.402 kb on - strand at 1369.402 kb on - strand at 1369.406 kb on - strand at 1369.406 kb on - strand at 1369.516 kb on + strand at 1369.516 kb on + strand at 1369.517 kb on - strand at 1369.541 kb on - strand at 1369.627 kb on + strand at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.752 kb on - strand, within EX28DRAFT_1354 at 1369.754 kb on - strand, within EX28DRAFT_1354 at 1369.782 kb on + strand, within EX28DRAFT_1354 at 1369.783 kb on - strand, within EX28DRAFT_1354 at 1369.825 kb on + strand, within EX28DRAFT_1354 at 1369.826 kb on - strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.829 kb on + strand, within EX28DRAFT_1354 at 1369.906 kb on + strand, within EX28DRAFT_1354 at 1369.989 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.133 kb on + strand, within EX28DRAFT_1354 at 1370.417 kb on + strand, within EX28DRAFT_1354 at 1370.688 kb on - strand at 1370.688 kb on - strand at 1370.867 kb on - strand, within EX28DRAFT_1355 at 1370.867 kb on - strand, within EX28DRAFT_1355 at 1371.011 kb on - strand, within EX28DRAFT_1355 at 1371.208 kb on - strand, within EX28DRAFT_1355 at 1371.257 kb on + strand, within EX28DRAFT_1355 at 1371.258 kb on - strand, within EX28DRAFT_1355
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,369,032 - EX28DRAFT_1353 0.71 +0.2 1,369,289 - EX28DRAFT_1353 0.86 +0.6 1,369,291 - EX28DRAFT_1353 0.86 -0.3 1,369,301 - EX28DRAFT_1353 0.87 -0.4 1,369,401 + +0.8 1,369,402 - -0.3 1,369,402 - -0.6 1,369,406 - +0.0 1,369,406 - +0.2 1,369,516 + -0.2 1,369,516 + -0.2 1,369,517 - -0.3 1,369,541 - +0.3 1,369,627 + +0.8 1,369,752 - EX28DRAFT_1354 0.19 +0.0 1,369,752 - EX28DRAFT_1354 0.19 +0.1 1,369,752 - EX28DRAFT_1354 0.19 +1.2 1,369,754 - EX28DRAFT_1354 0.20 -0.5 1,369,782 + EX28DRAFT_1354 0.22 +1.0 1,369,783 - EX28DRAFT_1354 0.22 +0.1 1,369,825 + EX28DRAFT_1354 0.26 +0.7 1,369,826 - EX28DRAFT_1354 0.26 -0.1 1,369,829 + EX28DRAFT_1354 0.27 +0.7 1,369,829 + EX28DRAFT_1354 0.27 -0.0 1,369,829 + EX28DRAFT_1354 0.27 +0.7 1,369,906 + EX28DRAFT_1354 0.34 -0.4 1,369,989 + EX28DRAFT_1354 0.41 -0.3 1,370,133 + EX28DRAFT_1354 0.55 -0.0 1,370,133 + EX28DRAFT_1354 0.55 -0.1 1,370,133 + EX28DRAFT_1354 0.55 +0.3 1,370,417 + EX28DRAFT_1354 0.81 -0.1 1,370,688 - +1.4 1,370,688 - -0.7 1,370,867 - EX28DRAFT_1355 0.18 +0.1 1,370,867 - EX28DRAFT_1355 0.18 -0.4 1,371,011 - EX28DRAFT_1355 0.28 +0.6 1,371,208 - EX28DRAFT_1355 0.43 +2.1 1,371,257 + EX28DRAFT_1355 0.46 +0.4 1,371,258 - EX28DRAFT_1355 0.46 +0.2
Or see this region's nucleotide sequence