Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1310

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1307 and EX28DRAFT_1308 overlap by 4 nucleotidesEX28DRAFT_1308 and EX28DRAFT_1309 overlap by 4 nucleotidesEX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotidesEX28DRAFT_1310 and EX28DRAFT_1311 overlap by 4 nucleotides EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978 _1307 EX28DRAFT_1308: EX28DRAFT_1308 - hypothetical protein, at 1,313,975 to 1,314,172 _1308 EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744 _1309 EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435 _1310 EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397 _1311 Position (kb) 1314 1315 1316Strain fitness (log2 ratio) -1 0 1at 1313.845 kb on - strand, within EX28DRAFT_1307at 1313.883 kb on + strand, within EX28DRAFT_1307at 1313.919 kb on + strand, within EX28DRAFT_1307at 1313.952 kb on + strandat 1314.012 kb on - strand, within EX28DRAFT_1308at 1314.113 kb on + strand, within EX28DRAFT_1308at 1314.179 kb on - strandat 1314.179 kb on - strandat 1314.355 kb on + strand, within EX28DRAFT_1309at 1314.437 kb on - strand, within EX28DRAFT_1309at 1314.667 kb on + strand, within EX28DRAFT_1309at 1314.713 kb on + strandat 1314.713 kb on + strandat 1314.714 kb on - strandat 1314.734 kb on - strandat 1314.932 kb on + strand, within EX28DRAFT_1310at 1314.978 kb on + strand, within EX28DRAFT_1310at 1314.979 kb on - strand, within EX28DRAFT_1310at 1315.604 kb on + strand, within EX28DRAFT_1311at 1315.640 kb on - strand, within EX28DRAFT_1311at 1315.666 kb on - strand, within EX28DRAFT_1311at 1315.784 kb on + strand, within EX28DRAFT_1311at 1315.870 kb on - strand, within EX28DRAFT_1311at 1315.870 kb on - strand, within EX28DRAFT_1311at 1315.878 kb on + strand, within EX28DRAFT_1311at 1315.879 kb on - strand, within EX28DRAFT_1311at 1315.890 kb on + strand, within EX28DRAFT_1311at 1315.891 kb on - strand, within EX28DRAFT_1311at 1315.915 kb on + strand, within EX28DRAFT_1311at 1315.975 kb on - strand, within EX28DRAFT_1311at 1316.010 kb on + strand, within EX28DRAFT_1311at 1316.011 kb on - strand, within EX28DRAFT_1311at 1316.064 kb on - strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,313,845 - EX28DRAFT_1307 0.62 +0.3
1,313,883 + EX28DRAFT_1307 0.73 -0.7
1,313,919 + EX28DRAFT_1307 0.83 +1.1
1,313,952 + -0.4
1,314,012 - EX28DRAFT_1308 0.19 -1.0
1,314,113 + EX28DRAFT_1308 0.70 +0.3
1,314,179 - +0.1
1,314,179 - -0.9
1,314,355 + EX28DRAFT_1309 0.32 +0.1
1,314,437 - EX28DRAFT_1309 0.47 -0.8
1,314,667 + EX28DRAFT_1309 0.86 +0.7
1,314,713 + -0.3
1,314,713 + +0.7
1,314,714 - -0.1
1,314,734 - +0.5
1,314,932 + EX28DRAFT_1310 0.27 -1.7
1,314,978 + EX28DRAFT_1310 0.34 -0.1
1,314,979 - EX28DRAFT_1310 0.34 +0.0
1,315,604 + EX28DRAFT_1311 0.18 -0.7
1,315,640 - EX28DRAFT_1311 0.22 +0.2
1,315,666 - EX28DRAFT_1311 0.24 +0.2
1,315,784 + EX28DRAFT_1311 0.36 +0.2
1,315,870 - EX28DRAFT_1311 0.45 +0.1
1,315,870 - EX28DRAFT_1311 0.45 -1.1
1,315,878 + EX28DRAFT_1311 0.46 +0.0
1,315,879 - EX28DRAFT_1311 0.46 -0.4
1,315,890 + EX28DRAFT_1311 0.47 +0.7
1,315,891 - EX28DRAFT_1311 0.48 -0.4
1,315,915 + EX28DRAFT_1311 0.50 +0.6
1,315,975 - EX28DRAFT_1311 0.56 -0.1
1,316,010 + EX28DRAFT_1311 0.60 -0.0
1,316,011 - EX28DRAFT_1311 0.60 -1.2
1,316,064 - EX28DRAFT_1311 0.65 +0.5
1,316,191 + EX28DRAFT_1311 0.79 +0.5
1,316,191 + EX28DRAFT_1311 0.79 +0.1
1,316,191 + EX28DRAFT_1311 0.79 -0.3

Or see this region's nucleotide sequence