Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1284 and EX28DRAFT_1285 are separated by 11 nucleotides EX28DRAFT_1285 and EX28DRAFT_1286 are separated by 3 nucleotides EX28DRAFT_1286 and EX28DRAFT_1287 are separated by 56 nucleotides EX28DRAFT_1287 and EX28DRAFT_1288 are separated by 42 nucleotides
EX28DRAFT_1284: EX28DRAFT_1284 - hypothetical protein, at 1,298,630 to 1,299,706
_1284
EX28DRAFT_1285: EX28DRAFT_1285 - hypothetical protein, at 1,299,718 to 1,300,158
_1285
EX28DRAFT_1286: EX28DRAFT_1286 - hypothetical protein, at 1,300,162 to 1,301,547
_1286
EX28DRAFT_1287: EX28DRAFT_1287 - hypothetical protein, at 1,301,604 to 1,302,341
_1287
EX28DRAFT_1288: EX28DRAFT_1288 - Phage Mu protein F like protein, at 1,302,384 to 1,303,340
_1288
Position (kb)
1300
1301
1302 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1299.168 kb on + strand, within EX28DRAFT_1284 at 1299.260 kb on - strand, within EX28DRAFT_1284 at 1299.309 kb on + strand, within EX28DRAFT_1284 at 1299.355 kb on + strand, within EX28DRAFT_1284 at 1299.355 kb on + strand, within EX28DRAFT_1284 at 1299.505 kb on - strand, within EX28DRAFT_1284 at 1299.533 kb on + strand, within EX28DRAFT_1284 at 1299.723 kb on + strand at 1299.724 kb on - strand at 1299.764 kb on + strand, within EX28DRAFT_1285 at 1299.764 kb on + strand, within EX28DRAFT_1285 at 1299.764 kb on + strand, within EX28DRAFT_1285 at 1299.764 kb on + strand, within EX28DRAFT_1285 at 1299.765 kb on - strand, within EX28DRAFT_1285 at 1299.781 kb on + strand, within EX28DRAFT_1285 at 1299.782 kb on - strand, within EX28DRAFT_1285 at 1299.782 kb on - strand, within EX28DRAFT_1285 at 1299.785 kb on + strand, within EX28DRAFT_1285 at 1299.860 kb on + strand, within EX28DRAFT_1285 at 1299.974 kb on + strand, within EX28DRAFT_1285 at 1299.974 kb on + strand, within EX28DRAFT_1285 at 1299.974 kb on + strand, within EX28DRAFT_1285 at 1299.974 kb on + strand, within EX28DRAFT_1285 at 1299.974 kb on + strand, within EX28DRAFT_1285 at 1299.975 kb on - strand, within EX28DRAFT_1285 at 1299.975 kb on - strand, within EX28DRAFT_1285 at 1299.982 kb on + strand, within EX28DRAFT_1285 at 1299.986 kb on + strand, within EX28DRAFT_1285 at 1299.987 kb on - strand, within EX28DRAFT_1285 at 1299.987 kb on - strand, within EX28DRAFT_1285 at 1300.136 kb on - strand at 1300.248 kb on - strand at 1300.248 kb on - strand at 1300.526 kb on + strand, within EX28DRAFT_1286 at 1300.526 kb on + strand, within EX28DRAFT_1286 at 1300.526 kb on + strand, within EX28DRAFT_1286 at 1300.527 kb on - strand, within EX28DRAFT_1286 at 1300.527 kb on - strand, within EX28DRAFT_1286 at 1300.570 kb on - strand, within EX28DRAFT_1286 at 1300.641 kb on - strand, within EX28DRAFT_1286 at 1300.728 kb on - strand, within EX28DRAFT_1286 at 1300.966 kb on - strand, within EX28DRAFT_1286 at 1301.222 kb on + strand, within EX28DRAFT_1286 at 1301.222 kb on + strand, within EX28DRAFT_1286 at 1301.223 kb on - strand, within EX28DRAFT_1286 at 1301.223 kb on - strand, within EX28DRAFT_1286 at 1301.223 kb on - strand, within EX28DRAFT_1286 at 1301.285 kb on + strand, within EX28DRAFT_1286 at 1301.286 kb on - strand, within EX28DRAFT_1286 at 1301.378 kb on + strand, within EX28DRAFT_1286 at 1301.379 kb on - strand, within EX28DRAFT_1286 at 1301.379 kb on - strand, within EX28DRAFT_1286 at 1301.379 kb on - strand, within EX28DRAFT_1286 at 1301.379 kb on - strand, within EX28DRAFT_1286 at 1301.463 kb on + strand at 1301.464 kb on - strand at 1301.530 kb on - strand at 1301.579 kb on - strand at 1301.609 kb on - strand at 1301.635 kb on - strand at 1301.690 kb on + strand, within EX28DRAFT_1287 at 1301.691 kb on - strand, within EX28DRAFT_1287 at 1301.767 kb on + strand, within EX28DRAFT_1287 at 1301.767 kb on + strand, within EX28DRAFT_1287 at 1301.768 kb on - strand, within EX28DRAFT_1287 at 1301.768 kb on - strand, within EX28DRAFT_1287 at 1301.868 kb on + strand, within EX28DRAFT_1287 at 1302.022 kb on - strand, within EX28DRAFT_1287 at 1302.039 kb on + strand, within EX28DRAFT_1287 at 1302.039 kb on + strand, within EX28DRAFT_1287 at 1302.039 kb on + strand, within EX28DRAFT_1287 at 1302.039 kb on + strand, within EX28DRAFT_1287 at 1302.040 kb on - strand, within EX28DRAFT_1287 at 1302.040 kb on - strand, within EX28DRAFT_1287 at 1302.044 kb on + strand, within EX28DRAFT_1287 at 1302.162 kb on - strand, within EX28DRAFT_1287 at 1302.385 kb on + strand at 1302.390 kb on - strand at 1302.521 kb on - strand, within EX28DRAFT_1288 at 1302.547 kb on + strand, within EX28DRAFT_1288
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,299,168 + EX28DRAFT_1284 0.50 -0.1 1,299,260 - EX28DRAFT_1284 0.58 -0.3 1,299,309 + EX28DRAFT_1284 0.63 +0.3 1,299,355 + EX28DRAFT_1284 0.67 -0.1 1,299,355 + EX28DRAFT_1284 0.67 +0.7 1,299,505 - EX28DRAFT_1284 0.81 +0.3 1,299,533 + EX28DRAFT_1284 0.84 +0.9 1,299,723 + -0.8 1,299,724 - +0.6 1,299,764 + EX28DRAFT_1285 0.10 +0.1 1,299,764 + EX28DRAFT_1285 0.10 -0.0 1,299,764 + EX28DRAFT_1285 0.10 +0.1 1,299,764 + EX28DRAFT_1285 0.10 +0.2 1,299,765 - EX28DRAFT_1285 0.11 +0.3 1,299,781 + EX28DRAFT_1285 0.14 -0.9 1,299,782 - EX28DRAFT_1285 0.15 +0.9 1,299,782 - EX28DRAFT_1285 0.15 -0.5 1,299,785 + EX28DRAFT_1285 0.15 -1.5 1,299,860 + EX28DRAFT_1285 0.32 -2.0 1,299,974 + EX28DRAFT_1285 0.58 -1.8 1,299,974 + EX28DRAFT_1285 0.58 -0.4 1,299,974 + EX28DRAFT_1285 0.58 -0.4 1,299,974 + EX28DRAFT_1285 0.58 +0.1 1,299,974 + EX28DRAFT_1285 0.58 -0.4 1,299,975 - EX28DRAFT_1285 0.58 +0.4 1,299,975 - EX28DRAFT_1285 0.58 -0.0 1,299,982 + EX28DRAFT_1285 0.60 -2.1 1,299,986 + EX28DRAFT_1285 0.61 +0.1 1,299,987 - EX28DRAFT_1285 0.61 -0.1 1,299,987 - EX28DRAFT_1285 0.61 +0.1 1,300,136 - -0.1 1,300,248 - +0.5 1,300,248 - +0.4 1,300,526 + EX28DRAFT_1286 0.26 +0.6 1,300,526 + EX28DRAFT_1286 0.26 -0.6 1,300,526 + EX28DRAFT_1286 0.26 -0.2 1,300,527 - EX28DRAFT_1286 0.26 +0.4 1,300,527 - EX28DRAFT_1286 0.26 -0.9 1,300,570 - EX28DRAFT_1286 0.29 -0.1 1,300,641 - EX28DRAFT_1286 0.35 -0.8 1,300,728 - EX28DRAFT_1286 0.41 -0.1 1,300,966 - EX28DRAFT_1286 0.58 +0.3 1,301,222 + EX28DRAFT_1286 0.76 +0.3 1,301,222 + EX28DRAFT_1286 0.76 -0.6 1,301,223 - EX28DRAFT_1286 0.77 -0.2 1,301,223 - EX28DRAFT_1286 0.77 +1.8 1,301,223 - EX28DRAFT_1286 0.77 +0.2 1,301,285 + EX28DRAFT_1286 0.81 -2.8 1,301,286 - EX28DRAFT_1286 0.81 -0.1 1,301,378 + EX28DRAFT_1286 0.88 -0.5 1,301,379 - EX28DRAFT_1286 0.88 -0.2 1,301,379 - EX28DRAFT_1286 0.88 +0.4 1,301,379 - EX28DRAFT_1286 0.88 -0.6 1,301,379 - EX28DRAFT_1286 0.88 -1.7 1,301,463 + -0.4 1,301,464 - -0.5 1,301,530 - +0.1 1,301,579 - -0.4 1,301,609 - +0.8 1,301,635 - -0.6 1,301,690 + EX28DRAFT_1287 0.12 +0.3 1,301,691 - EX28DRAFT_1287 0.12 -0.3 1,301,767 + EX28DRAFT_1287 0.22 +0.8 1,301,767 + EX28DRAFT_1287 0.22 +0.4 1,301,768 - EX28DRAFT_1287 0.22 +0.0 1,301,768 - EX28DRAFT_1287 0.22 +0.2 1,301,868 + EX28DRAFT_1287 0.36 -0.5 1,302,022 - EX28DRAFT_1287 0.57 +0.0 1,302,039 + EX28DRAFT_1287 0.59 -1.4 1,302,039 + EX28DRAFT_1287 0.59 -0.2 1,302,039 + EX28DRAFT_1287 0.59 -0.3 1,302,039 + EX28DRAFT_1287 0.59 +1.9 1,302,040 - EX28DRAFT_1287 0.59 +0.2 1,302,040 - EX28DRAFT_1287 0.59 -0.1 1,302,044 + EX28DRAFT_1287 0.60 -0.3 1,302,162 - EX28DRAFT_1287 0.76 -0.8 1,302,385 + +1.2 1,302,390 - +0.0 1,302,521 - EX28DRAFT_1288 0.14 -0.9 1,302,547 + EX28DRAFT_1288 0.17 +0.9
Or see this region's nucleotide sequence