Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1286

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1284 and EX28DRAFT_1285 are separated by 11 nucleotidesEX28DRAFT_1285 and EX28DRAFT_1286 are separated by 3 nucleotidesEX28DRAFT_1286 and EX28DRAFT_1287 are separated by 56 nucleotidesEX28DRAFT_1287 and EX28DRAFT_1288 are separated by 42 nucleotides EX28DRAFT_1284: EX28DRAFT_1284 - hypothetical protein, at 1,298,630 to 1,299,706 _1284 EX28DRAFT_1285: EX28DRAFT_1285 - hypothetical protein, at 1,299,718 to 1,300,158 _1285 EX28DRAFT_1286: EX28DRAFT_1286 - hypothetical protein, at 1,300,162 to 1,301,547 _1286 EX28DRAFT_1287: EX28DRAFT_1287 - hypothetical protein, at 1,301,604 to 1,302,341 _1287 EX28DRAFT_1288: EX28DRAFT_1288 - Phage Mu protein F like protein, at 1,302,384 to 1,303,340 _1288 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1299.168 kb on + strand, within EX28DRAFT_1284at 1299.260 kb on - strand, within EX28DRAFT_1284at 1299.309 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.355 kb on + strand, within EX28DRAFT_1284at 1299.505 kb on - strand, within EX28DRAFT_1284at 1299.533 kb on + strand, within EX28DRAFT_1284at 1299.723 kb on + strandat 1299.724 kb on - strandat 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.764 kb on + strand, within EX28DRAFT_1285at 1299.765 kb on - strand, within EX28DRAFT_1285at 1299.781 kb on + strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.782 kb on - strand, within EX28DRAFT_1285at 1299.785 kb on + strand, within EX28DRAFT_1285at 1299.860 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.974 kb on + strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.975 kb on - strand, within EX28DRAFT_1285at 1299.982 kb on + strand, within EX28DRAFT_1285at 1299.986 kb on + strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1299.987 kb on - strand, within EX28DRAFT_1285at 1300.136 kb on - strandat 1300.248 kb on - strandat 1300.248 kb on - strandat 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.526 kb on + strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.527 kb on - strand, within EX28DRAFT_1286at 1300.570 kb on - strand, within EX28DRAFT_1286at 1300.641 kb on - strand, within EX28DRAFT_1286at 1300.728 kb on - strand, within EX28DRAFT_1286at 1300.966 kb on - strand, within EX28DRAFT_1286at 1301.222 kb on + strand, within EX28DRAFT_1286at 1301.222 kb on + strand, within EX28DRAFT_1286at 1301.223 kb on - strand, within EX28DRAFT_1286at 1301.223 kb on - strand, within EX28DRAFT_1286at 1301.223 kb on - strand, within EX28DRAFT_1286at 1301.285 kb on + strand, within EX28DRAFT_1286at 1301.286 kb on - strand, within EX28DRAFT_1286at 1301.378 kb on + strand, within EX28DRAFT_1286at 1301.379 kb on - strand, within EX28DRAFT_1286at 1301.379 kb on - strand, within EX28DRAFT_1286at 1301.379 kb on - strand, within EX28DRAFT_1286at 1301.379 kb on - strand, within EX28DRAFT_1286at 1301.463 kb on + strandat 1301.464 kb on - strandat 1301.530 kb on - strandat 1301.579 kb on - strandat 1301.609 kb on - strandat 1301.635 kb on - strandat 1301.690 kb on + strand, within EX28DRAFT_1287at 1301.691 kb on - strand, within EX28DRAFT_1287at 1301.767 kb on + strand, within EX28DRAFT_1287at 1301.767 kb on + strand, within EX28DRAFT_1287at 1301.768 kb on - strand, within EX28DRAFT_1287at 1301.768 kb on - strand, within EX28DRAFT_1287at 1301.868 kb on + strand, within EX28DRAFT_1287at 1302.022 kb on - strand, within EX28DRAFT_1287at 1302.039 kb on + strand, within EX28DRAFT_1287at 1302.039 kb on + strand, within EX28DRAFT_1287at 1302.039 kb on + strand, within EX28DRAFT_1287at 1302.039 kb on + strand, within EX28DRAFT_1287at 1302.040 kb on - strand, within EX28DRAFT_1287at 1302.040 kb on - strand, within EX28DRAFT_1287at 1302.044 kb on + strand, within EX28DRAFT_1287at 1302.162 kb on - strand, within EX28DRAFT_1287at 1302.385 kb on + strandat 1302.390 kb on - strandat 1302.521 kb on - strand, within EX28DRAFT_1288at 1302.547 kb on + strand, within EX28DRAFT_1288

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,299,168 + EX28DRAFT_1284 0.50 -0.1
1,299,260 - EX28DRAFT_1284 0.58 -0.3
1,299,309 + EX28DRAFT_1284 0.63 +0.3
1,299,355 + EX28DRAFT_1284 0.67 -0.1
1,299,355 + EX28DRAFT_1284 0.67 +0.7
1,299,505 - EX28DRAFT_1284 0.81 +0.3
1,299,533 + EX28DRAFT_1284 0.84 +0.9
1,299,723 + -0.8
1,299,724 - +0.6
1,299,764 + EX28DRAFT_1285 0.10 +0.1
1,299,764 + EX28DRAFT_1285 0.10 -0.0
1,299,764 + EX28DRAFT_1285 0.10 +0.1
1,299,764 + EX28DRAFT_1285 0.10 +0.2
1,299,765 - EX28DRAFT_1285 0.11 +0.3
1,299,781 + EX28DRAFT_1285 0.14 -0.9
1,299,782 - EX28DRAFT_1285 0.15 +0.9
1,299,782 - EX28DRAFT_1285 0.15 -0.5
1,299,785 + EX28DRAFT_1285 0.15 -1.5
1,299,860 + EX28DRAFT_1285 0.32 -2.0
1,299,974 + EX28DRAFT_1285 0.58 -1.8
1,299,974 + EX28DRAFT_1285 0.58 -0.4
1,299,974 + EX28DRAFT_1285 0.58 -0.4
1,299,974 + EX28DRAFT_1285 0.58 +0.1
1,299,974 + EX28DRAFT_1285 0.58 -0.4
1,299,975 - EX28DRAFT_1285 0.58 +0.4
1,299,975 - EX28DRAFT_1285 0.58 -0.0
1,299,982 + EX28DRAFT_1285 0.60 -2.1
1,299,986 + EX28DRAFT_1285 0.61 +0.1
1,299,987 - EX28DRAFT_1285 0.61 -0.1
1,299,987 - EX28DRAFT_1285 0.61 +0.1
1,300,136 - -0.1
1,300,248 - +0.5
1,300,248 - +0.4
1,300,526 + EX28DRAFT_1286 0.26 +0.6
1,300,526 + EX28DRAFT_1286 0.26 -0.6
1,300,526 + EX28DRAFT_1286 0.26 -0.2
1,300,527 - EX28DRAFT_1286 0.26 +0.4
1,300,527 - EX28DRAFT_1286 0.26 -0.9
1,300,570 - EX28DRAFT_1286 0.29 -0.1
1,300,641 - EX28DRAFT_1286 0.35 -0.8
1,300,728 - EX28DRAFT_1286 0.41 -0.1
1,300,966 - EX28DRAFT_1286 0.58 +0.3
1,301,222 + EX28DRAFT_1286 0.76 +0.3
1,301,222 + EX28DRAFT_1286 0.76 -0.6
1,301,223 - EX28DRAFT_1286 0.77 -0.2
1,301,223 - EX28DRAFT_1286 0.77 +1.8
1,301,223 - EX28DRAFT_1286 0.77 +0.2
1,301,285 + EX28DRAFT_1286 0.81 -2.8
1,301,286 - EX28DRAFT_1286 0.81 -0.1
1,301,378 + EX28DRAFT_1286 0.88 -0.5
1,301,379 - EX28DRAFT_1286 0.88 -0.2
1,301,379 - EX28DRAFT_1286 0.88 +0.4
1,301,379 - EX28DRAFT_1286 0.88 -0.6
1,301,379 - EX28DRAFT_1286 0.88 -1.7
1,301,463 + -0.4
1,301,464 - -0.5
1,301,530 - +0.1
1,301,579 - -0.4
1,301,609 - +0.8
1,301,635 - -0.6
1,301,690 + EX28DRAFT_1287 0.12 +0.3
1,301,691 - EX28DRAFT_1287 0.12 -0.3
1,301,767 + EX28DRAFT_1287 0.22 +0.8
1,301,767 + EX28DRAFT_1287 0.22 +0.4
1,301,768 - EX28DRAFT_1287 0.22 +0.0
1,301,768 - EX28DRAFT_1287 0.22 +0.2
1,301,868 + EX28DRAFT_1287 0.36 -0.5
1,302,022 - EX28DRAFT_1287 0.57 +0.0
1,302,039 + EX28DRAFT_1287 0.59 -1.4
1,302,039 + EX28DRAFT_1287 0.59 -0.2
1,302,039 + EX28DRAFT_1287 0.59 -0.3
1,302,039 + EX28DRAFT_1287 0.59 +1.9
1,302,040 - EX28DRAFT_1287 0.59 +0.2
1,302,040 - EX28DRAFT_1287 0.59 -0.1
1,302,044 + EX28DRAFT_1287 0.60 -0.3
1,302,162 - EX28DRAFT_1287 0.76 -0.8
1,302,385 + +1.2
1,302,390 - +0.0
1,302,521 - EX28DRAFT_1288 0.14 -0.9
1,302,547 + EX28DRAFT_1288 0.17 +0.9

Or see this region's nucleotide sequence