Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1269 and EX28DRAFT_1270 are separated by 57 nucleotides EX28DRAFT_1270 and EX28DRAFT_1271 overlap by 59 nucleotides EX28DRAFT_1271 and EX28DRAFT_1272 overlap by 8 nucleotides EX28DRAFT_1272 and EX28DRAFT_1273 overlap by 1 nucleotides
EX28DRAFT_1269: EX28DRAFT_1269 - Head domain of trimeric autotransporter adhesin, at 1,285,733 to 1,287,241
_1269
EX28DRAFT_1270: EX28DRAFT_1270 - Putative phage tail protein, at 1,287,299 to 1,289,782
_1270
EX28DRAFT_1271: EX28DRAFT_1271 - NlpC/P60 family, at 1,289,724 to 1,290,161
_1271
EX28DRAFT_1272: EX28DRAFT_1272 - hypothetical protein, at 1,290,154 to 1,290,624
_1272
EX28DRAFT_1273: EX28DRAFT_1273 - hypothetical protein, at 1,290,624 to 1,291,118
_1273
Position (kb)
1287
1288
1289
1290 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1286.305 kb on + strand, within EX28DRAFT_1269 at 1286.438 kb on + strand, within EX28DRAFT_1269 at 1286.438 kb on + strand, within EX28DRAFT_1269 at 1286.438 kb on + strand, within EX28DRAFT_1269 at 1286.438 kb on + strand, within EX28DRAFT_1269 at 1286.439 kb on - strand, within EX28DRAFT_1269 at 1286.439 kb on - strand, within EX28DRAFT_1269 at 1286.441 kb on - strand, within EX28DRAFT_1269 at 1286.441 kb on - strand, within EX28DRAFT_1269 at 1286.441 kb on - strand, within EX28DRAFT_1269 at 1286.491 kb on + strand, within EX28DRAFT_1269 at 1286.492 kb on - strand, within EX28DRAFT_1269 at 1286.550 kb on + strand, within EX28DRAFT_1269 at 1286.550 kb on + strand, within EX28DRAFT_1269 at 1286.550 kb on + strand, within EX28DRAFT_1269 at 1286.550 kb on + strand, within EX28DRAFT_1269 at 1286.550 kb on + strand, within EX28DRAFT_1269 at 1286.551 kb on - strand, within EX28DRAFT_1269 at 1286.551 kb on - strand, within EX28DRAFT_1269 at 1286.551 kb on - strand, within EX28DRAFT_1269 at 1286.551 kb on - strand, within EX28DRAFT_1269 at 1286.556 kb on - strand, within EX28DRAFT_1269 at 1286.583 kb on + strand, within EX28DRAFT_1269 at 1286.584 kb on - strand, within EX28DRAFT_1269 at 1286.625 kb on + strand, within EX28DRAFT_1269 at 1286.626 kb on - strand, within EX28DRAFT_1269 at 1286.626 kb on - strand, within EX28DRAFT_1269 at 1286.746 kb on + strand, within EX28DRAFT_1269 at 1286.761 kb on + strand, within EX28DRAFT_1269 at 1286.762 kb on - strand, within EX28DRAFT_1269 at 1286.799 kb on + strand, within EX28DRAFT_1269 at 1286.800 kb on - strand, within EX28DRAFT_1269 at 1286.800 kb on - strand, within EX28DRAFT_1269 at 1286.800 kb on - strand, within EX28DRAFT_1269 at 1286.800 kb on - strand, within EX28DRAFT_1269 at 1286.800 kb on - strand, within EX28DRAFT_1269 at 1286.873 kb on + strand, within EX28DRAFT_1269 at 1286.874 kb on - strand, within EX28DRAFT_1269 at 1286.977 kb on + strand, within EX28DRAFT_1269 at 1286.977 kb on + strand, within EX28DRAFT_1269 at 1286.978 kb on - strand, within EX28DRAFT_1269 at 1286.980 kb on + strand, within EX28DRAFT_1269 at 1287.066 kb on + strand, within EX28DRAFT_1269 at 1287.067 kb on - strand, within EX28DRAFT_1269 at 1287.109 kb on - strand at 1287.135 kb on + strand at 1287.135 kb on + strand at 1287.212 kb on + strand at 1287.300 kb on + strand at 1287.321 kb on + strand at 1287.420 kb on + strand at 1287.632 kb on - strand, within EX28DRAFT_1270 at 1287.657 kb on + strand, within EX28DRAFT_1270 at 1287.658 kb on - strand, within EX28DRAFT_1270 at 1287.662 kb on - strand, within EX28DRAFT_1270 at 1287.662 kb on - strand, within EX28DRAFT_1270 at 1287.741 kb on + strand, within EX28DRAFT_1270 at 1287.742 kb on - strand, within EX28DRAFT_1270 at 1287.742 kb on - strand, within EX28DRAFT_1270 at 1287.802 kb on - strand, within EX28DRAFT_1270 at 1287.886 kb on + strand, within EX28DRAFT_1270 at 1287.886 kb on + strand, within EX28DRAFT_1270 at 1287.887 kb on - strand, within EX28DRAFT_1270 at 1287.991 kb on + strand, within EX28DRAFT_1270 at 1287.995 kb on + strand, within EX28DRAFT_1270 at 1288.178 kb on + strand, within EX28DRAFT_1270 at 1288.195 kb on - strand, within EX28DRAFT_1270 at 1288.198 kb on + strand, within EX28DRAFT_1270 at 1288.226 kb on + strand, within EX28DRAFT_1270 at 1288.282 kb on + strand, within EX28DRAFT_1270 at 1288.284 kb on + strand, within EX28DRAFT_1270 at 1288.285 kb on - strand, within EX28DRAFT_1270 at 1288.311 kb on + strand, within EX28DRAFT_1270 at 1288.312 kb on - strand, within EX28DRAFT_1270 at 1288.312 kb on - strand, within EX28DRAFT_1270 at 1288.312 kb on - strand, within EX28DRAFT_1270 at 1288.344 kb on + strand, within EX28DRAFT_1270 at 1288.345 kb on - strand, within EX28DRAFT_1270 at 1288.555 kb on + strand, within EX28DRAFT_1270 at 1288.573 kb on - strand, within EX28DRAFT_1270 at 1288.573 kb on - strand, within EX28DRAFT_1270 at 1288.573 kb on - strand, within EX28DRAFT_1270 at 1288.703 kb on - strand, within EX28DRAFT_1270 at 1288.728 kb on - strand, within EX28DRAFT_1270 at 1288.728 kb on - strand, within EX28DRAFT_1270 at 1288.730 kb on - strand, within EX28DRAFT_1270 at 1288.851 kb on + strand, within EX28DRAFT_1270 at 1288.852 kb on - strand, within EX28DRAFT_1270 at 1288.852 kb on - strand, within EX28DRAFT_1270 at 1288.857 kb on + strand, within EX28DRAFT_1270 at 1288.857 kb on + strand, within EX28DRAFT_1270 at 1289.061 kb on + strand, within EX28DRAFT_1270 at 1289.061 kb on + strand, within EX28DRAFT_1270 at 1289.202 kb on + strand, within EX28DRAFT_1270 at 1289.211 kb on + strand, within EX28DRAFT_1270 at 1289.212 kb on - strand, within EX28DRAFT_1270 at 1289.227 kb on + strand, within EX28DRAFT_1270 at 1289.227 kb on + strand, within EX28DRAFT_1270 at 1289.227 kb on + strand, within EX28DRAFT_1270 at 1289.271 kb on + strand, within EX28DRAFT_1270 at 1289.271 kb on + strand, within EX28DRAFT_1270 at 1289.271 kb on + strand, within EX28DRAFT_1270 at 1289.308 kb on - strand, within EX28DRAFT_1270 at 1289.308 kb on - strand, within EX28DRAFT_1270 at 1289.434 kb on + strand, within EX28DRAFT_1270 at 1289.435 kb on - strand, within EX28DRAFT_1270 at 1289.435 kb on - strand, within EX28DRAFT_1270 at 1289.435 kb on - strand, within EX28DRAFT_1270 at 1289.546 kb on + strand at 1289.592 kb on - strand at 1289.671 kb on + strand at 1289.726 kb on - strand at 1289.788 kb on + strand, within EX28DRAFT_1271 at 1289.808 kb on + strand, within EX28DRAFT_1271 at 1289.895 kb on + strand, within EX28DRAFT_1271 at 1289.895 kb on + strand, within EX28DRAFT_1271 at 1289.896 kb on - strand, within EX28DRAFT_1271 at 1289.987 kb on - strand, within EX28DRAFT_1271 at 1290.114 kb on - strand, within EX28DRAFT_1271 at 1290.143 kb on + strand at 1290.155 kb on + strand at 1290.191 kb on + strand at 1290.191 kb on + strand at 1290.279 kb on - strand, within EX28DRAFT_1272 at 1290.333 kb on - strand, within EX28DRAFT_1272 at 1290.333 kb on - strand, within EX28DRAFT_1272 at 1290.346 kb on - strand, within EX28DRAFT_1272 at 1290.540 kb on - strand, within EX28DRAFT_1272 at 1290.557 kb on + strand, within EX28DRAFT_1272 at 1290.558 kb on - strand, within EX28DRAFT_1272 at 1290.558 kb on - strand, within EX28DRAFT_1272
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,286,305 + EX28DRAFT_1269 0.38 -0.6 1,286,438 + EX28DRAFT_1269 0.47 +0.5 1,286,438 + EX28DRAFT_1269 0.47 -0.3 1,286,438 + EX28DRAFT_1269 0.47 -1.0 1,286,438 + EX28DRAFT_1269 0.47 +0.3 1,286,439 - EX28DRAFT_1269 0.47 -1.4 1,286,439 - EX28DRAFT_1269 0.47 -1.5 1,286,441 - EX28DRAFT_1269 0.47 +0.5 1,286,441 - EX28DRAFT_1269 0.47 -0.4 1,286,441 - EX28DRAFT_1269 0.47 +0.1 1,286,491 + EX28DRAFT_1269 0.50 +0.4 1,286,492 - EX28DRAFT_1269 0.50 +0.7 1,286,550 + EX28DRAFT_1269 0.54 -0.5 1,286,550 + EX28DRAFT_1269 0.54 -0.1 1,286,550 + EX28DRAFT_1269 0.54 -0.0 1,286,550 + EX28DRAFT_1269 0.54 +0.6 1,286,550 + EX28DRAFT_1269 0.54 -1.6 1,286,551 - EX28DRAFT_1269 0.54 +0.2 1,286,551 - EX28DRAFT_1269 0.54 -0.1 1,286,551 - EX28DRAFT_1269 0.54 +0.2 1,286,551 - EX28DRAFT_1269 0.54 -0.2 1,286,556 - EX28DRAFT_1269 0.55 +0.3 1,286,583 + EX28DRAFT_1269 0.56 -0.2 1,286,584 - EX28DRAFT_1269 0.56 -0.5 1,286,625 + EX28DRAFT_1269 0.59 -0.6 1,286,626 - EX28DRAFT_1269 0.59 +0.7 1,286,626 - EX28DRAFT_1269 0.59 +0.8 1,286,746 + EX28DRAFT_1269 0.67 -0.2 1,286,761 + EX28DRAFT_1269 0.68 -0.2 1,286,762 - EX28DRAFT_1269 0.68 +0.2 1,286,799 + EX28DRAFT_1269 0.71 -0.8 1,286,800 - EX28DRAFT_1269 0.71 +0.5 1,286,800 - EX28DRAFT_1269 0.71 +0.1 1,286,800 - EX28DRAFT_1269 0.71 +0.3 1,286,800 - EX28DRAFT_1269 0.71 +1.4 1,286,800 - EX28DRAFT_1269 0.71 -0.3 1,286,873 + EX28DRAFT_1269 0.76 +0.6 1,286,874 - EX28DRAFT_1269 0.76 -0.1 1,286,977 + EX28DRAFT_1269 0.82 +0.4 1,286,977 + EX28DRAFT_1269 0.82 -0.4 1,286,978 - EX28DRAFT_1269 0.83 +0.4 1,286,980 + EX28DRAFT_1269 0.83 -0.3 1,287,066 + EX28DRAFT_1269 0.88 +0.2 1,287,067 - EX28DRAFT_1269 0.88 +0.8 1,287,109 - +0.5 1,287,135 + +0.9 1,287,135 + -1.0 1,287,212 + +0.4 1,287,300 + +1.6 1,287,321 + -0.6 1,287,420 + +0.1 1,287,632 - EX28DRAFT_1270 0.13 -0.1 1,287,657 + EX28DRAFT_1270 0.14 -0.3 1,287,658 - EX28DRAFT_1270 0.14 -1.6 1,287,662 - EX28DRAFT_1270 0.15 -1.1 1,287,662 - EX28DRAFT_1270 0.15 -0.1 1,287,741 + EX28DRAFT_1270 0.18 +0.9 1,287,742 - EX28DRAFT_1270 0.18 -0.1 1,287,742 - EX28DRAFT_1270 0.18 -0.4 1,287,802 - EX28DRAFT_1270 0.20 -1.8 1,287,886 + EX28DRAFT_1270 0.24 -0.3 1,287,886 + EX28DRAFT_1270 0.24 -0.1 1,287,887 - EX28DRAFT_1270 0.24 -0.7 1,287,991 + EX28DRAFT_1270 0.28 -0.4 1,287,995 + EX28DRAFT_1270 0.28 -0.5 1,288,178 + EX28DRAFT_1270 0.35 +0.0 1,288,195 - EX28DRAFT_1270 0.36 +1.0 1,288,198 + EX28DRAFT_1270 0.36 +0.1 1,288,226 + EX28DRAFT_1270 0.37 -1.3 1,288,282 + EX28DRAFT_1270 0.40 -0.3 1,288,284 + EX28DRAFT_1270 0.40 -0.3 1,288,285 - EX28DRAFT_1270 0.40 -1.1 1,288,311 + EX28DRAFT_1270 0.41 -0.3 1,288,312 - EX28DRAFT_1270 0.41 -0.0 1,288,312 - EX28DRAFT_1270 0.41 +0.1 1,288,312 - EX28DRAFT_1270 0.41 -0.9 1,288,344 + EX28DRAFT_1270 0.42 +0.4 1,288,345 - EX28DRAFT_1270 0.42 -0.0 1,288,555 + EX28DRAFT_1270 0.51 -0.7 1,288,573 - EX28DRAFT_1270 0.51 -0.9 1,288,573 - EX28DRAFT_1270 0.51 +0.8 1,288,573 - EX28DRAFT_1270 0.51 +0.4 1,288,703 - EX28DRAFT_1270 0.57 +1.4 1,288,728 - EX28DRAFT_1270 0.58 -0.1 1,288,728 - EX28DRAFT_1270 0.58 +0.7 1,288,730 - EX28DRAFT_1270 0.58 +0.1 1,288,851 + EX28DRAFT_1270 0.62 +0.4 1,288,852 - EX28DRAFT_1270 0.63 +0.2 1,288,852 - EX28DRAFT_1270 0.63 -0.2 1,288,857 + EX28DRAFT_1270 0.63 -1.0 1,288,857 + EX28DRAFT_1270 0.63 +0.3 1,289,061 + EX28DRAFT_1270 0.71 -1.6 1,289,061 + EX28DRAFT_1270 0.71 +2.5 1,289,202 + EX28DRAFT_1270 0.77 -0.3 1,289,211 + EX28DRAFT_1270 0.77 +0.2 1,289,212 - EX28DRAFT_1270 0.77 -0.2 1,289,227 + EX28DRAFT_1270 0.78 +0.0 1,289,227 + EX28DRAFT_1270 0.78 +0.2 1,289,227 + EX28DRAFT_1270 0.78 +0.8 1,289,271 + EX28DRAFT_1270 0.79 -0.2 1,289,271 + EX28DRAFT_1270 0.79 +0.0 1,289,271 + EX28DRAFT_1270 0.79 -0.0 1,289,308 - EX28DRAFT_1270 0.81 +0.1 1,289,308 - EX28DRAFT_1270 0.81 -0.1 1,289,434 + EX28DRAFT_1270 0.86 +0.6 1,289,435 - EX28DRAFT_1270 0.86 +0.6 1,289,435 - EX28DRAFT_1270 0.86 -0.5 1,289,435 - EX28DRAFT_1270 0.86 -0.5 1,289,546 + -0.0 1,289,592 - +0.0 1,289,671 + +0.2 1,289,726 - +0.3 1,289,788 + EX28DRAFT_1271 0.15 -1.2 1,289,808 + EX28DRAFT_1271 0.19 -0.4 1,289,895 + EX28DRAFT_1271 0.39 -0.6 1,289,895 + EX28DRAFT_1271 0.39 +1.1 1,289,896 - EX28DRAFT_1271 0.39 +0.1 1,289,987 - EX28DRAFT_1271 0.60 +0.8 1,290,114 - EX28DRAFT_1271 0.89 -2.6 1,290,143 + -0.9 1,290,155 + +0.1 1,290,191 + -1.3 1,290,191 + -0.5 1,290,279 - EX28DRAFT_1272 0.27 +0.2 1,290,333 - EX28DRAFT_1272 0.38 +0.2 1,290,333 - EX28DRAFT_1272 0.38 -0.1 1,290,346 - EX28DRAFT_1272 0.41 -0.0 1,290,540 - EX28DRAFT_1272 0.82 +0.3 1,290,557 + EX28DRAFT_1272 0.86 -0.1 1,290,558 - EX28DRAFT_1272 0.86 -0.1 1,290,558 - EX28DRAFT_1272 0.86 +0.3
Or see this region's nucleotide sequence