Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1135

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1133 and EX28DRAFT_1134 are separated by 41 nucleotidesEX28DRAFT_1134 and EX28DRAFT_1135 are separated by 40 nucleotidesEX28DRAFT_1135 and EX28DRAFT_1136 are separated by 7 nucleotidesEX28DRAFT_1136 and EX28DRAFT_1137 are separated by 93 nucleotides EX28DRAFT_1133: EX28DRAFT_1133 - Protein-disulfide isomerase, at 1,147,891 to 1,148,502 _1133 EX28DRAFT_1134: EX28DRAFT_1134 - Protein-disulfide isomerase, at 1,148,544 to 1,149,302 _1134 EX28DRAFT_1135: EX28DRAFT_1135 - Uncharacterized protein conserved in bacteria, at 1,149,343 to 1,150,635 _1135 EX28DRAFT_1136: EX28DRAFT_1136 - Uncharacterized conserved protein (DUF2132), at 1,150,643 to 1,150,930 _1136 EX28DRAFT_1137: EX28DRAFT_1137 - Beta-galactosidase/beta-glucuronidase, at 1,151,024 to 1,153,195 _1137 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -2 -1 0 1at 1148.558 kb on - strandat 1148.560 kb on + strandat 1148.561 kb on - strandat 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.649 kb on - strand, within EX28DRAFT_1134at 1148.820 kb on + strand, within EX28DRAFT_1134at 1149.213 kb on + strand, within EX28DRAFT_1134at 1149.216 kb on + strand, within EX28DRAFT_1134at 1149.217 kb on - strand, within EX28DRAFT_1134at 1149.536 kb on + strand, within EX28DRAFT_1135at 1149.536 kb on + strand, within EX28DRAFT_1135at 1149.554 kb on + strand, within EX28DRAFT_1135at 1149.554 kb on + strand, within EX28DRAFT_1135at 1149.555 kb on - strand, within EX28DRAFT_1135at 1149.642 kb on - strand, within EX28DRAFT_1135at 1149.816 kb on + strand, within EX28DRAFT_1135at 1149.947 kb on + strand, within EX28DRAFT_1135at 1149.947 kb on + strand, within EX28DRAFT_1135at 1149.948 kb on - strand, within EX28DRAFT_1135at 1149.983 kb on + strand, within EX28DRAFT_1135at 1150.097 kb on + strand, within EX28DRAFT_1135at 1150.097 kb on + strand, within EX28DRAFT_1135at 1150.098 kb on - strand, within EX28DRAFT_1135at 1150.230 kb on + strand, within EX28DRAFT_1135at 1150.231 kb on - strand, within EX28DRAFT_1135at 1150.353 kb on + strand, within EX28DRAFT_1135at 1150.354 kb on - strand, within EX28DRAFT_1135at 1150.585 kb on + strandat 1150.586 kb on - strandat 1150.621 kb on + strandat 1150.621 kb on + strandat 1150.732 kb on - strand, within EX28DRAFT_1136at 1150.820 kb on - strand, within EX28DRAFT_1136at 1150.854 kb on + strand, within EX28DRAFT_1136at 1150.855 kb on - strand, within EX28DRAFT_1136at 1150.855 kb on - strand, within EX28DRAFT_1136at 1150.919 kb on - strandat 1150.930 kb on + strandat 1150.930 kb on + strandat 1150.930 kb on + strandat 1150.931 kb on - strandat 1151.089 kb on + strandat 1151.362 kb on - strand, within EX28DRAFT_1137at 1151.478 kb on + strand, within EX28DRAFT_1137at 1151.514 kb on + strand, within EX28DRAFT_1137at 1151.528 kb on - strand, within EX28DRAFT_1137at 1151.575 kb on + strand, within EX28DRAFT_1137at 1151.575 kb on + strand, within EX28DRAFT_1137at 1151.599 kb on + strand, within EX28DRAFT_1137at 1151.605 kb on - strand, within EX28DRAFT_1137

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,148,558 - +1.7
1,148,560 + +0.1
1,148,561 - -0.2
1,148,649 - EX28DRAFT_1134 0.14 -0.3
1,148,649 - EX28DRAFT_1134 0.14 +0.5
1,148,820 + EX28DRAFT_1134 0.36 +0.3
1,149,213 + EX28DRAFT_1134 0.88 -0.1
1,149,216 + EX28DRAFT_1134 0.89 -1.3
1,149,217 - EX28DRAFT_1134 0.89 +1.5
1,149,536 + EX28DRAFT_1135 0.15 +0.2
1,149,536 + EX28DRAFT_1135 0.15 +0.3
1,149,554 + EX28DRAFT_1135 0.16 -0.4
1,149,554 + EX28DRAFT_1135 0.16 +0.3
1,149,555 - EX28DRAFT_1135 0.16 -1.2
1,149,642 - EX28DRAFT_1135 0.23 -0.9
1,149,816 + EX28DRAFT_1135 0.37 -1.0
1,149,947 + EX28DRAFT_1135 0.47 -0.8
1,149,947 + EX28DRAFT_1135 0.47 -0.1
1,149,948 - EX28DRAFT_1135 0.47 -0.6
1,149,983 + EX28DRAFT_1135 0.49 -0.3
1,150,097 + EX28DRAFT_1135 0.58 +0.1
1,150,097 + EX28DRAFT_1135 0.58 -0.2
1,150,098 - EX28DRAFT_1135 0.58 -0.0
1,150,230 + EX28DRAFT_1135 0.69 +1.3
1,150,231 - EX28DRAFT_1135 0.69 -0.5
1,150,353 + EX28DRAFT_1135 0.78 +0.3
1,150,354 - EX28DRAFT_1135 0.78 +0.4
1,150,585 + +0.5
1,150,586 - -0.2
1,150,621 + -0.9
1,150,621 + +0.0
1,150,732 - EX28DRAFT_1136 0.31 -0.6
1,150,820 - EX28DRAFT_1136 0.61 -0.3
1,150,854 + EX28DRAFT_1136 0.73 +0.5
1,150,855 - EX28DRAFT_1136 0.74 -0.6
1,150,855 - EX28DRAFT_1136 0.74 -0.0
1,150,919 - -0.2
1,150,930 + +0.1
1,150,930 + +0.1
1,150,930 + -0.3
1,150,931 - +0.9
1,151,089 + -0.0
1,151,362 - EX28DRAFT_1137 0.16 +0.3
1,151,478 + EX28DRAFT_1137 0.21 -0.4
1,151,514 + EX28DRAFT_1137 0.23 +0.1
1,151,528 - EX28DRAFT_1137 0.23 +0.3
1,151,575 + EX28DRAFT_1137 0.25 +0.5
1,151,575 + EX28DRAFT_1137 0.25 -0.9
1,151,599 + EX28DRAFT_1137 0.26 +0.8
1,151,605 - EX28DRAFT_1137 0.27 -2.7

Or see this region's nucleotide sequence