Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1101

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1099 and EX28DRAFT_1100 are separated by 130 nucleotidesEX28DRAFT_1100 and EX28DRAFT_1101 are separated by 43 nucleotidesEX28DRAFT_1101 and EX28DRAFT_1102 are separated by 198 nucleotides EX28DRAFT_1099: EX28DRAFT_1099 - NADH dehydrogenase, FAD-containing subunit, at 1,111,594 to 1,112,796 _1099 EX28DRAFT_1100: EX28DRAFT_1100 - transcriptional regulator, BadM/Rrf2 family, at 1,112,927 to 1,113,433 _1100 EX28DRAFT_1101: EX28DRAFT_1101 - Zn-dependent alcohol dehydrogenases, at 1,113,477 to 1,114,487 _1101 EX28DRAFT_1102: EX28DRAFT_1102 - ATPase components of ABC transporters with duplicated ATPase domains, at 1,114,686 to 1,116,398 _1102 Position (kb) 1113 1114 1115Strain fitness (log2 ratio) -1 0 1at 1112.482 kb on + strand, within EX28DRAFT_1099at 1112.556 kb on + strand, within EX28DRAFT_1099at 1112.697 kb on + strandat 1112.844 kb on + strandat 1112.954 kb on + strandat 1112.995 kb on + strand, within EX28DRAFT_1100at 1113.054 kb on - strand, within EX28DRAFT_1100at 1113.168 kb on + strand, within EX28DRAFT_1100at 1113.261 kb on + strand, within EX28DRAFT_1100at 1113.261 kb on + strand, within EX28DRAFT_1100at 1113.337 kb on + strand, within EX28DRAFT_1100at 1113.338 kb on - strand, within EX28DRAFT_1100at 1113.437 kb on + strandat 1113.470 kb on + strandat 1113.471 kb on - strandat 1113.587 kb on + strand, within EX28DRAFT_1101at 1113.986 kb on - strand, within EX28DRAFT_1101at 1114.037 kb on - strand, within EX28DRAFT_1101at 1114.202 kb on + strand, within EX28DRAFT_1101at 1114.202 kb on + strand, within EX28DRAFT_1101at 1114.202 kb on + strand, within EX28DRAFT_1101at 1114.202 kb on + strand, within EX28DRAFT_1101at 1114.203 kb on - strand, within EX28DRAFT_1101at 1114.297 kb on - strand, within EX28DRAFT_1101at 1114.325 kb on + strand, within EX28DRAFT_1101at 1114.380 kb on + strand, within EX28DRAFT_1101at 1114.492 kb on - strandat 1114.530 kb on - strandat 1114.530 kb on - strandat 1114.530 kb on - strandat 1114.530 kb on - strandat 1114.530 kb on - strandat 1114.583 kb on + strandat 1114.583 kb on + strandat 1114.583 kb on + strandat 1114.583 kb on + strandat 1114.584 kb on - strandat 1114.584 kb on - strandat 1114.584 kb on - strandat 1114.584 kb on - strandat 1114.634 kb on + strandat 1114.651 kb on - strandat 1114.688 kb on - strandat 1114.981 kb on - strand, within EX28DRAFT_1102at 1115.373 kb on - strand, within EX28DRAFT_1102at 1115.373 kb on - strand, within EX28DRAFT_1102

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,112,482 + EX28DRAFT_1099 0.74 +0.8
1,112,556 + EX28DRAFT_1099 0.80 +0.7
1,112,697 + +0.2
1,112,844 + +0.4
1,112,954 + -0.3
1,112,995 + EX28DRAFT_1100 0.13 +0.3
1,113,054 - EX28DRAFT_1100 0.25 -0.1
1,113,168 + EX28DRAFT_1100 0.48 +0.0
1,113,261 + EX28DRAFT_1100 0.66 -0.4
1,113,261 + EX28DRAFT_1100 0.66 +0.6
1,113,337 + EX28DRAFT_1100 0.81 -1.3
1,113,338 - EX28DRAFT_1100 0.81 -0.3
1,113,437 + -0.7
1,113,470 + +0.9
1,113,471 - -1.1
1,113,587 + EX28DRAFT_1101 0.11 +0.3
1,113,986 - EX28DRAFT_1101 0.50 -0.7
1,114,037 - EX28DRAFT_1101 0.55 -0.3
1,114,202 + EX28DRAFT_1101 0.72 +1.2
1,114,202 + EX28DRAFT_1101 0.72 -0.3
1,114,202 + EX28DRAFT_1101 0.72 -0.1
1,114,202 + EX28DRAFT_1101 0.72 -1.3
1,114,203 - EX28DRAFT_1101 0.72 -0.2
1,114,297 - EX28DRAFT_1101 0.81 -0.3
1,114,325 + EX28DRAFT_1101 0.84 -1.7
1,114,380 + EX28DRAFT_1101 0.89 -0.0
1,114,492 - -0.0
1,114,530 - +0.7
1,114,530 - -0.4
1,114,530 - -0.2
1,114,530 - -0.3
1,114,530 - -0.7
1,114,583 + +0.4
1,114,583 + +0.2
1,114,583 + +0.7
1,114,583 + -0.3
1,114,584 - -0.7
1,114,584 - +0.2
1,114,584 - +0.5
1,114,584 - -0.2
1,114,634 + +0.2
1,114,651 - +0.6
1,114,688 - +0.1
1,114,981 - EX28DRAFT_1102 0.17 +0.1
1,115,373 - EX28DRAFT_1102 0.40 +0.0
1,115,373 - EX28DRAFT_1102 0.40 -1.0

Or see this region's nucleotide sequence