Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1097

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1095 and EX28DRAFT_1096 overlap by 1 nucleotidesEX28DRAFT_1096 and EX28DRAFT_1097 overlap by 4 nucleotidesEX28DRAFT_1097 and EX28DRAFT_1098 are separated by 10 nucleotides EX28DRAFT_1095: EX28DRAFT_1095 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 1,106,424 to 1,108,031 _1095 EX28DRAFT_1096: EX28DRAFT_1096 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,031 to 1,108,879 _1096 EX28DRAFT_1097: EX28DRAFT_1097 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 1,108,876 to 1,109,820 _1097 EX28DRAFT_1098: EX28DRAFT_1098 - ABC transporter substrate binding protein, KPN_01854 family, at 1,109,831 to 1,111,450 _1098 Position (kb) 1108 1109 1110Strain fitness (log2 ratio) -2 -1 0 1 2at 1108.134 kb on + strand, within EX28DRAFT_1096at 1108.134 kb on + strand, within EX28DRAFT_1096at 1108.134 kb on + strand, within EX28DRAFT_1096at 1108.135 kb on - strand, within EX28DRAFT_1096at 1108.135 kb on - strand, within EX28DRAFT_1096at 1108.191 kb on + strand, within EX28DRAFT_1096at 1108.341 kb on + strand, within EX28DRAFT_1096at 1108.636 kb on + strand, within EX28DRAFT_1096at 1108.644 kb on + strand, within EX28DRAFT_1096at 1108.644 kb on + strand, within EX28DRAFT_1096at 1108.645 kb on - strand, within EX28DRAFT_1096at 1108.734 kb on + strand, within EX28DRAFT_1096at 1108.863 kb on + strandat 1108.993 kb on + strand, within EX28DRAFT_1097at 1108.994 kb on - strand, within EX28DRAFT_1097at 1109.395 kb on - strand, within EX28DRAFT_1097at 1109.422 kb on - strand, within EX28DRAFT_1097at 1109.422 kb on - strand, within EX28DRAFT_1097at 1109.648 kb on + strand, within EX28DRAFT_1097at 1109.683 kb on + strand, within EX28DRAFT_1097at 1109.949 kb on + strandat 1109.950 kb on - strandat 1109.967 kb on + strandat 1110.318 kb on + strand, within EX28DRAFT_1098at 1110.318 kb on + strand, within EX28DRAFT_1098at 1110.319 kb on - strand, within EX28DRAFT_1098at 1110.319 kb on - strand, within EX28DRAFT_1098at 1110.319 kb on - strand, within EX28DRAFT_1098at 1110.630 kb on + strand, within EX28DRAFT_1098at 1110.638 kb on - strand, within EX28DRAFT_1098at 1110.638 kb on - strand, within EX28DRAFT_1098at 1110.640 kb on - strand, within EX28DRAFT_1098at 1110.653 kb on - strand, within EX28DRAFT_1098at 1110.670 kb on - strand, within EX28DRAFT_1098

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,108,134 + EX28DRAFT_1096 0.12 -0.3
1,108,134 + EX28DRAFT_1096 0.12 -0.6
1,108,134 + EX28DRAFT_1096 0.12 +0.2
1,108,135 - EX28DRAFT_1096 0.12 +0.3
1,108,135 - EX28DRAFT_1096 0.12 +0.7
1,108,191 + EX28DRAFT_1096 0.19 +0.2
1,108,341 + EX28DRAFT_1096 0.37 +0.2
1,108,636 + EX28DRAFT_1096 0.71 +0.1
1,108,644 + EX28DRAFT_1096 0.72 -0.1
1,108,644 + EX28DRAFT_1096 0.72 +0.4
1,108,645 - EX28DRAFT_1096 0.72 -0.8
1,108,734 + EX28DRAFT_1096 0.83 +0.9
1,108,863 + -0.7
1,108,993 + EX28DRAFT_1097 0.12 -0.3
1,108,994 - EX28DRAFT_1097 0.12 +0.0
1,109,395 - EX28DRAFT_1097 0.55 -2.1
1,109,422 - EX28DRAFT_1097 0.58 +0.3
1,109,422 - EX28DRAFT_1097 0.58 -2.6
1,109,648 + EX28DRAFT_1097 0.82 -0.3
1,109,683 + EX28DRAFT_1097 0.85 -0.1
1,109,949 + +0.0
1,109,950 - -0.1
1,109,967 + -0.6
1,110,318 + EX28DRAFT_1098 0.30 +2.4
1,110,318 + EX28DRAFT_1098 0.30 +0.8
1,110,319 - EX28DRAFT_1098 0.30 -0.1
1,110,319 - EX28DRAFT_1098 0.30 -0.1
1,110,319 - EX28DRAFT_1098 0.30 -0.2
1,110,630 + EX28DRAFT_1098 0.49 -0.1
1,110,638 - EX28DRAFT_1098 0.50 +0.3
1,110,638 - EX28DRAFT_1098 0.50 -0.2
1,110,640 - EX28DRAFT_1098 0.50 +0.7
1,110,653 - EX28DRAFT_1098 0.51 +0.4
1,110,670 - EX28DRAFT_1098 0.52 -1.3

Or see this region's nucleotide sequence