Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1074

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1072 and EX28DRAFT_1073 overlap by 4 nucleotidesEX28DRAFT_1073 and EX28DRAFT_1074 are separated by 18 nucleotidesEX28DRAFT_1074 and EX28DRAFT_1075 are separated by 28 nucleotidesEX28DRAFT_1075 and EX28DRAFT_1076 overlap by 8 nucleotides EX28DRAFT_1072: EX28DRAFT_1072 - amidase, hydantoinase/carbamoylase family, at 1,084,884 to 1,086,110 _1072 EX28DRAFT_1073: EX28DRAFT_1073 - L-2-amino-thiazoline-4-carboxylic acid hydrolase, at 1,086,107 to 1,086,589 _1073 EX28DRAFT_1074: EX28DRAFT_1074 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,086,608 to 1,087,765 _1074 EX28DRAFT_1075: EX28DRAFT_1075 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,087,794 to 1,088,513 _1075 EX28DRAFT_1076: EX28DRAFT_1076 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,088,506 to 1,089,273 _1076 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -2 -1 0 1at 1085.783 kb on - strand, within EX28DRAFT_1072at 1085.843 kb on + strand, within EX28DRAFT_1072at 1085.928 kb on - strand, within EX28DRAFT_1072at 1085.928 kb on - strand, within EX28DRAFT_1072at 1085.928 kb on - strand, within EX28DRAFT_1072at 1085.999 kb on + strandat 1086.201 kb on + strand, within EX28DRAFT_1073at 1086.202 kb on - strand, within EX28DRAFT_1073at 1086.207 kb on - strand, within EX28DRAFT_1073at 1086.207 kb on - strand, within EX28DRAFT_1073at 1086.274 kb on - strand, within EX28DRAFT_1073at 1086.274 kb on - strand, within EX28DRAFT_1073at 1086.274 kb on - strand, within EX28DRAFT_1073at 1086.274 kb on - strand, within EX28DRAFT_1073at 1086.306 kb on + strand, within EX28DRAFT_1073at 1086.307 kb on - strand, within EX28DRAFT_1073at 1086.307 kb on - strand, within EX28DRAFT_1073at 1086.307 kb on - strand, within EX28DRAFT_1073at 1086.312 kb on + strand, within EX28DRAFT_1073at 1086.312 kb on + strand, within EX28DRAFT_1073at 1086.312 kb on + strand, within EX28DRAFT_1073at 1086.313 kb on - strand, within EX28DRAFT_1073at 1086.313 kb on - strand, within EX28DRAFT_1073at 1086.313 kb on - strand, within EX28DRAFT_1073at 1086.373 kb on - strand, within EX28DRAFT_1073at 1086.373 kb on - strand, within EX28DRAFT_1073at 1086.581 kb on - strandat 1086.698 kb on - strandat 1086.828 kb on + strand, within EX28DRAFT_1074at 1086.828 kb on + strand, within EX28DRAFT_1074at 1086.876 kb on + strand, within EX28DRAFT_1074at 1086.877 kb on - strand, within EX28DRAFT_1074at 1087.037 kb on - strand, within EX28DRAFT_1074at 1087.407 kb on + strand, within EX28DRAFT_1074at 1087.408 kb on - strand, within EX28DRAFT_1074at 1087.411 kb on + strand, within EX28DRAFT_1074at 1087.412 kb on - strand, within EX28DRAFT_1074at 1087.412 kb on - strand, within EX28DRAFT_1074at 1087.583 kb on - strand, within EX28DRAFT_1074at 1087.586 kb on - strand, within EX28DRAFT_1074at 1087.717 kb on + strandat 1087.817 kb on - strandat 1088.414 kb on + strand, within EX28DRAFT_1075at 1088.474 kb on - strandat 1088.592 kb on + strand, within EX28DRAFT_1076at 1088.597 kb on + strand, within EX28DRAFT_1076

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,085,783 - EX28DRAFT_1072 0.73 +0.0
1,085,843 + EX28DRAFT_1072 0.78 +0.0
1,085,928 - EX28DRAFT_1072 0.85 -1.1
1,085,928 - EX28DRAFT_1072 0.85 -0.5
1,085,928 - EX28DRAFT_1072 0.85 -0.4
1,085,999 + -2.4
1,086,201 + EX28DRAFT_1073 0.19 +0.4
1,086,202 - EX28DRAFT_1073 0.20 +0.5
1,086,207 - EX28DRAFT_1073 0.21 -0.7
1,086,207 - EX28DRAFT_1073 0.21 +0.1
1,086,274 - EX28DRAFT_1073 0.35 +0.6
1,086,274 - EX28DRAFT_1073 0.35 -1.2
1,086,274 - EX28DRAFT_1073 0.35 +0.2
1,086,274 - EX28DRAFT_1073 0.35 +0.7
1,086,306 + EX28DRAFT_1073 0.41 +0.3
1,086,307 - EX28DRAFT_1073 0.41 +0.5
1,086,307 - EX28DRAFT_1073 0.41 +0.0
1,086,307 - EX28DRAFT_1073 0.41 +1.1
1,086,312 + EX28DRAFT_1073 0.42 +0.4
1,086,312 + EX28DRAFT_1073 0.42 -0.5
1,086,312 + EX28DRAFT_1073 0.42 +0.5
1,086,313 - EX28DRAFT_1073 0.43 +0.5
1,086,313 - EX28DRAFT_1073 0.43 -0.1
1,086,313 - EX28DRAFT_1073 0.43 -0.0
1,086,373 - EX28DRAFT_1073 0.55 -0.4
1,086,373 - EX28DRAFT_1073 0.55 +0.5
1,086,581 - -0.8
1,086,698 - +0.1
1,086,828 + EX28DRAFT_1074 0.19 -0.9
1,086,828 + EX28DRAFT_1074 0.19 +0.5
1,086,876 + EX28DRAFT_1074 0.23 -0.1
1,086,877 - EX28DRAFT_1074 0.23 +1.1
1,087,037 - EX28DRAFT_1074 0.37 -0.1
1,087,407 + EX28DRAFT_1074 0.69 -0.4
1,087,408 - EX28DRAFT_1074 0.69 -0.1
1,087,411 + EX28DRAFT_1074 0.69 -0.1
1,087,412 - EX28DRAFT_1074 0.69 +0.1
1,087,412 - EX28DRAFT_1074 0.69 -1.4
1,087,583 - EX28DRAFT_1074 0.84 -0.5
1,087,586 - EX28DRAFT_1074 0.84 -0.2
1,087,717 + -0.1
1,087,817 - -0.4
1,088,414 + EX28DRAFT_1075 0.86 +0.3
1,088,474 - -0.4
1,088,592 + EX28DRAFT_1076 0.11 -0.5
1,088,597 + EX28DRAFT_1076 0.12 -1.1

Or see this region's nucleotide sequence