Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1063 and EX28DRAFT_1064 are separated by 121 nucleotides EX28DRAFT_1064 and EX28DRAFT_1065 overlap by 8 nucleotides EX28DRAFT_1065 and EX28DRAFT_1066 are separated by 160 nucleotides
EX28DRAFT_1063: EX28DRAFT_1063 - Na+/citrate symporter, at 1,074,409 to 1,075,740
_1063
EX28DRAFT_1064: EX28DRAFT_1064 - Helix-turn-helix domain, at 1,075,862 to 1,076,503
_1064
EX28DRAFT_1065: EX28DRAFT_1065 - Predicted transcriptional regulators, at 1,076,496 to 1,076,795
_1065
EX28DRAFT_1066: EX28DRAFT_1066 - translation elongation factor EF-G, at 1,076,956 to 1,079,055
_1066
Position (kb)
1076
1077 Strain fitness (log2 ratio)
-1
0
1
2 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.555 kb on + strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.807 kb on - strand at 1075.807 kb on - strand at 1075.823 kb on + strand at 1075.823 kb on + strand at 1075.826 kb on - strand at 1075.826 kb on - strand at 1075.895 kb on + strand at 1075.896 kb on - strand at 1075.896 kb on - strand at 1076.021 kb on + strand, within EX28DRAFT_1064 at 1076.080 kb on - strand, within EX28DRAFT_1064 at 1076.153 kb on + strand, within EX28DRAFT_1064 at 1076.154 kb on - strand, within EX28DRAFT_1064 at 1076.194 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.242 kb on + strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.255 kb on + strand, within EX28DRAFT_1064 at 1076.514 kb on + strand at 1076.514 kb on + strand at 1076.653 kb on - strand, within EX28DRAFT_1065 at 1076.653 kb on - strand, within EX28DRAFT_1065 at 1076.763 kb on + strand, within EX28DRAFT_1065 at 1076.827 kb on - strand at 1076.857 kb on - strand at 1076.952 kb on + strand at 1077.053 kb on - strand at 1077.083 kb on + strand at 1077.084 kb on - strand at 1077.190 kb on + strand, within EX28DRAFT_1066 at 1077.292 kb on + strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.293 kb on - strand, within EX28DRAFT_1066 at 1077.348 kb on + strand, within EX28DRAFT_1066 at 1077.349 kb on - strand, within EX28DRAFT_1066 at 1077.664 kb on + strand, within EX28DRAFT_1066 at 1077.665 kb on - strand, within EX28DRAFT_1066 at 1077.771 kb on + strand, within EX28DRAFT_1066
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,075,551 + EX28DRAFT_1063 0.86 +0.4 1,075,551 + EX28DRAFT_1063 0.86 +0.3 1,075,551 + EX28DRAFT_1063 0.86 +0.9 1,075,551 + EX28DRAFT_1063 0.86 +0.5 1,075,555 + EX28DRAFT_1063 0.86 +0.9 1,075,556 - EX28DRAFT_1063 0.86 -1.4 1,075,556 - EX28DRAFT_1063 0.86 +0.3 1,075,556 - EX28DRAFT_1063 0.86 -0.5 1,075,556 - EX28DRAFT_1063 0.86 -0.5 1,075,556 - EX28DRAFT_1063 0.86 +0.3 1,075,807 - +0.0 1,075,807 - -1.1 1,075,823 + -0.7 1,075,823 + +0.0 1,075,826 - +0.5 1,075,826 - -0.1 1,075,895 + +1.7 1,075,896 - -0.1 1,075,896 - -0.2 1,076,021 + EX28DRAFT_1064 0.25 +0.3 1,076,080 - EX28DRAFT_1064 0.34 +2.0 1,076,153 + EX28DRAFT_1064 0.45 -0.2 1,076,154 - EX28DRAFT_1064 0.45 -0.8 1,076,194 + EX28DRAFT_1064 0.52 +0.4 1,076,198 + EX28DRAFT_1064 0.52 -0.3 1,076,198 + EX28DRAFT_1064 0.52 -0.2 1,076,199 - EX28DRAFT_1064 0.52 -0.4 1,076,199 - EX28DRAFT_1064 0.52 -1.1 1,076,242 + EX28DRAFT_1064 0.59 +0.6 1,076,243 - EX28DRAFT_1064 0.59 -1.1 1,076,243 - EX28DRAFT_1064 0.59 -0.5 1,076,255 + EX28DRAFT_1064 0.61 -0.1 1,076,514 + -0.6 1,076,514 + +0.0 1,076,653 - EX28DRAFT_1065 0.52 -0.3 1,076,653 - EX28DRAFT_1065 0.52 +0.4 1,076,763 + EX28DRAFT_1065 0.89 +0.3 1,076,827 - -1.0 1,076,857 - -0.6 1,076,952 + +1.7 1,077,053 - +0.8 1,077,083 + -0.1 1,077,084 - -0.5 1,077,190 + EX28DRAFT_1066 0.11 +0.1 1,077,292 + EX28DRAFT_1066 0.16 -0.4 1,077,293 - EX28DRAFT_1066 0.16 -1.1 1,077,293 - EX28DRAFT_1066 0.16 -0.4 1,077,293 - EX28DRAFT_1066 0.16 +0.1 1,077,293 - EX28DRAFT_1066 0.16 +0.6 1,077,293 - EX28DRAFT_1066 0.16 -0.0 1,077,348 + EX28DRAFT_1066 0.19 -0.4 1,077,349 - EX28DRAFT_1066 0.19 -0.0 1,077,664 + EX28DRAFT_1066 0.34 -0.3 1,077,665 - EX28DRAFT_1066 0.34 +0.6 1,077,771 + EX28DRAFT_1066 0.39 +0.3
Or see this region's nucleotide sequence