Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1062 and EX28DRAFT_1063 are separated by 404 nucleotides EX28DRAFT_1063 and EX28DRAFT_1064 are separated by 121 nucleotides EX28DRAFT_1064 and EX28DRAFT_1065 overlap by 8 nucleotides
EX28DRAFT_1062: EX28DRAFT_1062 - Predicted permeases, at 1,073,057 to 1,074,004
_1062
EX28DRAFT_1063: EX28DRAFT_1063 - Na+/citrate symporter, at 1,074,409 to 1,075,740
_1063
EX28DRAFT_1064: EX28DRAFT_1064 - Helix-turn-helix domain, at 1,075,862 to 1,076,503
_1064
EX28DRAFT_1065: EX28DRAFT_1065 - Predicted transcriptional regulators, at 1,076,496 to 1,076,795
_1065
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-1
0
1
2 at 1073.410 kb on + strand, within EX28DRAFT_1062 at 1073.410 kb on + strand, within EX28DRAFT_1062 at 1073.606 kb on - strand, within EX28DRAFT_1062 at 1073.676 kb on + strand, within EX28DRAFT_1062 at 1073.756 kb on - strand, within EX28DRAFT_1062 at 1073.769 kb on - strand, within EX28DRAFT_1062 at 1073.769 kb on - strand, within EX28DRAFT_1062 at 1074.224 kb on + strand at 1074.277 kb on - strand at 1074.406 kb on + strand at 1074.409 kb on - strand at 1074.417 kb on + strand at 1074.564 kb on + strand, within EX28DRAFT_1063 at 1074.717 kb on + strand, within EX28DRAFT_1063 at 1074.718 kb on - strand, within EX28DRAFT_1063 at 1074.763 kb on + strand, within EX28DRAFT_1063 at 1074.914 kb on - strand, within EX28DRAFT_1063 at 1074.914 kb on - strand, within EX28DRAFT_1063 at 1074.916 kb on - strand, within EX28DRAFT_1063 at 1074.916 kb on - strand, within EX28DRAFT_1063 at 1074.948 kb on - strand, within EX28DRAFT_1063 at 1075.034 kb on - strand, within EX28DRAFT_1063 at 1075.034 kb on - strand, within EX28DRAFT_1063 at 1075.072 kb on - strand, within EX28DRAFT_1063 at 1075.084 kb on - strand, within EX28DRAFT_1063 at 1075.329 kb on + strand, within EX28DRAFT_1063 at 1075.333 kb on + strand, within EX28DRAFT_1063 at 1075.384 kb on - strand, within EX28DRAFT_1063 at 1075.436 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.438 kb on + strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.439 kb on - strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.551 kb on + strand, within EX28DRAFT_1063 at 1075.555 kb on + strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.556 kb on - strand, within EX28DRAFT_1063 at 1075.807 kb on - strand at 1075.807 kb on - strand at 1075.823 kb on + strand at 1075.823 kb on + strand at 1075.826 kb on - strand at 1075.826 kb on - strand at 1075.895 kb on + strand at 1075.896 kb on - strand at 1075.896 kb on - strand at 1076.021 kb on + strand, within EX28DRAFT_1064 at 1076.080 kb on - strand, within EX28DRAFT_1064 at 1076.153 kb on + strand, within EX28DRAFT_1064 at 1076.154 kb on - strand, within EX28DRAFT_1064 at 1076.194 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.198 kb on + strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.199 kb on - strand, within EX28DRAFT_1064 at 1076.242 kb on + strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.243 kb on - strand, within EX28DRAFT_1064 at 1076.255 kb on + strand, within EX28DRAFT_1064 at 1076.514 kb on + strand at 1076.514 kb on + strand at 1076.653 kb on - strand, within EX28DRAFT_1065 at 1076.653 kb on - strand, within EX28DRAFT_1065
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,073,410 + EX28DRAFT_1062 0.37 +0.4 1,073,410 + EX28DRAFT_1062 0.37 -0.2 1,073,606 - EX28DRAFT_1062 0.58 +0.3 1,073,676 + EX28DRAFT_1062 0.65 +0.2 1,073,756 - EX28DRAFT_1062 0.74 +0.0 1,073,769 - EX28DRAFT_1062 0.75 +0.7 1,073,769 - EX28DRAFT_1062 0.75 +1.0 1,074,224 + -1.6 1,074,277 - +0.4 1,074,406 + -1.6 1,074,409 - +0.4 1,074,417 + -0.3 1,074,564 + EX28DRAFT_1063 0.12 -0.1 1,074,717 + EX28DRAFT_1063 0.23 +0.5 1,074,718 - EX28DRAFT_1063 0.23 -0.1 1,074,763 + EX28DRAFT_1063 0.27 +0.4 1,074,914 - EX28DRAFT_1063 0.38 -0.5 1,074,914 - EX28DRAFT_1063 0.38 +0.1 1,074,916 - EX28DRAFT_1063 0.38 +0.0 1,074,916 - EX28DRAFT_1063 0.38 +0.4 1,074,948 - EX28DRAFT_1063 0.40 +1.0 1,075,034 - EX28DRAFT_1063 0.47 -1.3 1,075,034 - EX28DRAFT_1063 0.47 +0.2 1,075,072 - EX28DRAFT_1063 0.50 -0.0 1,075,084 - EX28DRAFT_1063 0.51 -0.2 1,075,329 + EX28DRAFT_1063 0.69 +0.8 1,075,333 + EX28DRAFT_1063 0.69 -0.5 1,075,384 - EX28DRAFT_1063 0.73 -0.0 1,075,436 + EX28DRAFT_1063 0.77 +0.7 1,075,438 + EX28DRAFT_1063 0.77 -0.2 1,075,438 + EX28DRAFT_1063 0.77 -0.6 1,075,438 + EX28DRAFT_1063 0.77 -1.0 1,075,438 + EX28DRAFT_1063 0.77 -0.1 1,075,439 - EX28DRAFT_1063 0.77 +1.0 1,075,439 - EX28DRAFT_1063 0.77 +0.1 1,075,439 - EX28DRAFT_1063 0.77 +0.5 1,075,439 - EX28DRAFT_1063 0.77 +1.0 1,075,551 + EX28DRAFT_1063 0.86 +0.4 1,075,551 + EX28DRAFT_1063 0.86 +0.3 1,075,551 + EX28DRAFT_1063 0.86 +0.9 1,075,551 + EX28DRAFT_1063 0.86 +0.5 1,075,555 + EX28DRAFT_1063 0.86 +0.9 1,075,556 - EX28DRAFT_1063 0.86 -1.4 1,075,556 - EX28DRAFT_1063 0.86 +0.3 1,075,556 - EX28DRAFT_1063 0.86 -0.5 1,075,556 - EX28DRAFT_1063 0.86 -0.5 1,075,556 - EX28DRAFT_1063 0.86 +0.3 1,075,807 - +0.0 1,075,807 - -1.1 1,075,823 + -0.7 1,075,823 + +0.0 1,075,826 - +0.5 1,075,826 - -0.1 1,075,895 + +1.7 1,075,896 - -0.1 1,075,896 - -0.2 1,076,021 + EX28DRAFT_1064 0.25 +0.3 1,076,080 - EX28DRAFT_1064 0.34 +2.0 1,076,153 + EX28DRAFT_1064 0.45 -0.2 1,076,154 - EX28DRAFT_1064 0.45 -0.8 1,076,194 + EX28DRAFT_1064 0.52 +0.4 1,076,198 + EX28DRAFT_1064 0.52 -0.3 1,076,198 + EX28DRAFT_1064 0.52 -0.2 1,076,199 - EX28DRAFT_1064 0.52 -0.4 1,076,199 - EX28DRAFT_1064 0.52 -1.1 1,076,242 + EX28DRAFT_1064 0.59 +0.6 1,076,243 - EX28DRAFT_1064 0.59 -1.1 1,076,243 - EX28DRAFT_1064 0.59 -0.5 1,076,255 + EX28DRAFT_1064 0.61 -0.1 1,076,514 + -0.6 1,076,514 + +0.0 1,076,653 - EX28DRAFT_1065 0.52 -0.3 1,076,653 - EX28DRAFT_1065 0.52 +0.4
Or see this region's nucleotide sequence