Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1025 and EX28DRAFT_1026 are separated by 271 nucleotides EX28DRAFT_1026 and EX28DRAFT_1027 are separated by 17 nucleotides
EX28DRAFT_1025: EX28DRAFT_1025 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,031,520 to 1,032,929
_1025
EX28DRAFT_1026: EX28DRAFT_1026 - Spermidine/putrescine-binding periplasmic protein, at 1,033,201 to 1,034,346
_1026
EX28DRAFT_1027: EX28DRAFT_1027 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,034,364 to 1,035,377
_1027
Position (kb)
1033
1034
1035 Strain fitness (log2 ratio)
-2
-1
0
1 at 1032.376 kb on - strand, within EX28DRAFT_1025 at 1032.674 kb on + strand, within EX28DRAFT_1025 at 1032.852 kb on - strand at 1032.852 kb on - strand at 1032.942 kb on + strand at 1033.131 kb on + strand at 1033.149 kb on + strand at 1033.150 kb on - strand at 1033.150 kb on - strand at 1033.200 kb on + strand at 1033.201 kb on - strand at 1033.331 kb on - strand, within EX28DRAFT_1026 at 1033.462 kb on + strand, within EX28DRAFT_1026 at 1033.504 kb on - strand, within EX28DRAFT_1026 at 1033.504 kb on - strand, within EX28DRAFT_1026 at 1033.528 kb on - strand, within EX28DRAFT_1026 at 1033.543 kb on - strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.651 kb on + strand, within EX28DRAFT_1026 at 1033.652 kb on - strand, within EX28DRAFT_1026 at 1033.753 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.768 kb on + strand, within EX28DRAFT_1026 at 1033.769 kb on - strand, within EX28DRAFT_1026 at 1033.819 kb on - strand, within EX28DRAFT_1026 at 1033.822 kb on - strand, within EX28DRAFT_1026 at 1034.098 kb on + strand, within EX28DRAFT_1026 at 1034.098 kb on + strand, within EX28DRAFT_1026 at 1034.099 kb on - strand, within EX28DRAFT_1026 at 1034.188 kb on - strand, within EX28DRAFT_1026 at 1034.188 kb on - strand, within EX28DRAFT_1026 at 1034.300 kb on - strand at 1034.320 kb on + strand at 1034.321 kb on - strand at 1034.371 kb on - strand at 1034.403 kb on + strand at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1034.634 kb on - strand, within EX28DRAFT_1027 at 1035.030 kb on + strand, within EX28DRAFT_1027 at 1035.109 kb on + strand, within EX28DRAFT_1027 at 1035.130 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.150 kb on - strand, within EX28DRAFT_1027 at 1035.158 kb on + strand, within EX28DRAFT_1027 at 1035.159 kb on - strand, within EX28DRAFT_1027 at 1035.208 kb on - strand, within EX28DRAFT_1027
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,032,376 - EX28DRAFT_1025 0.61 +0.3 1,032,674 + EX28DRAFT_1025 0.82 -0.3 1,032,852 - +0.4 1,032,852 - +0.0 1,032,942 + +0.4 1,033,131 + -0.9 1,033,149 + -0.4 1,033,150 - -0.0 1,033,150 - +0.5 1,033,200 + -0.2 1,033,201 - -0.4 1,033,331 - EX28DRAFT_1026 0.11 -0.2 1,033,462 + EX28DRAFT_1026 0.23 +0.3 1,033,504 - EX28DRAFT_1026 0.26 -0.0 1,033,504 - EX28DRAFT_1026 0.26 -0.3 1,033,528 - EX28DRAFT_1026 0.29 +1.4 1,033,543 - EX28DRAFT_1026 0.30 -0.4 1,033,651 + EX28DRAFT_1026 0.39 -0.8 1,033,651 + EX28DRAFT_1026 0.39 +0.0 1,033,651 + EX28DRAFT_1026 0.39 -0.2 1,033,651 + EX28DRAFT_1026 0.39 +0.6 1,033,652 - EX28DRAFT_1026 0.39 +1.0 1,033,753 + EX28DRAFT_1026 0.48 +0.5 1,033,768 + EX28DRAFT_1026 0.49 -2.0 1,033,768 + EX28DRAFT_1026 0.49 +1.0 1,033,768 + EX28DRAFT_1026 0.49 +0.0 1,033,769 - EX28DRAFT_1026 0.50 +1.1 1,033,819 - EX28DRAFT_1026 0.54 +0.2 1,033,822 - EX28DRAFT_1026 0.54 +0.0 1,034,098 + EX28DRAFT_1026 0.78 +1.1 1,034,098 + EX28DRAFT_1026 0.78 -1.7 1,034,099 - EX28DRAFT_1026 0.78 +1.3 1,034,188 - EX28DRAFT_1026 0.86 -0.0 1,034,188 - EX28DRAFT_1026 0.86 -0.1 1,034,300 - -0.2 1,034,320 + +0.1 1,034,321 - -0.2 1,034,371 - +1.6 1,034,403 + -0.1 1,034,634 - EX28DRAFT_1027 0.27 +0.4 1,034,634 - EX28DRAFT_1027 0.27 -0.3 1,035,030 + EX28DRAFT_1027 0.66 -0.3 1,035,109 + EX28DRAFT_1027 0.73 -1.0 1,035,130 - EX28DRAFT_1027 0.76 -0.6 1,035,150 - EX28DRAFT_1027 0.78 +0.4 1,035,150 - EX28DRAFT_1027 0.78 +0.3 1,035,158 + EX28DRAFT_1027 0.78 +0.5 1,035,159 - EX28DRAFT_1027 0.78 +0.1 1,035,208 - EX28DRAFT_1027 0.83 -0.1
Or see this region's nucleotide sequence