Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0990

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0989 and EX28DRAFT_0990 are separated by 66 nucleotidesEX28DRAFT_0990 and EX28DRAFT_0991 are separated by 34 nucleotides EX28DRAFT_0989: EX28DRAFT_0989 - ABC-type sugar transport systems, ATPase components, at 990,981 to 992,063 _0989 EX28DRAFT_0990: EX28DRAFT_0990 - Outer membrane protein G (OmpG), at 992,130 to 993,044 _0990 EX28DRAFT_0991: EX28DRAFT_0991 - transcriptional regulator, LacI family, at 993,079 to 994,089 _0991 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1 2at 991.166 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.250 kb on + strand, within EX28DRAFT_0989at 991.251 kb on - strand, within EX28DRAFT_0989at 991.260 kb on + strand, within EX28DRAFT_0989at 991.359 kb on + strand, within EX28DRAFT_0989at 991.370 kb on + strand, within EX28DRAFT_0989at 991.535 kb on + strand, within EX28DRAFT_0989at 991.549 kb on - strand, within EX28DRAFT_0989at 991.603 kb on + strand, within EX28DRAFT_0989at 991.617 kb on - strand, within EX28DRAFT_0989at 991.924 kb on - strand, within EX28DRAFT_0989at 992.018 kb on + strandat 992.018 kb on + strandat 992.018 kb on + strandat 992.019 kb on - strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.062 kb on - strandat 992.113 kb on + strandat 992.116 kb on - strandat 992.136 kb on - strandat 992.144 kb on - strandat 992.235 kb on + strand, within EX28DRAFT_0990at 992.281 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.284 kb on - strand, within EX28DRAFT_0990at 992.373 kb on - strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.490 kb on - strand, within EX28DRAFT_0990at 992.562 kb on - strand, within EX28DRAFT_0990at 992.604 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.751 kb on - strand, within EX28DRAFT_0990at 992.788 kb on - strand, within EX28DRAFT_0990at 992.795 kb on + strand, within EX28DRAFT_0990at 992.796 kb on - strand, within EX28DRAFT_0990at 992.826 kb on + strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.925 kb on + strand, within EX28DRAFT_0990at 992.926 kb on - strand, within EX28DRAFT_0990at 992.961 kb on + strandat 993.151 kb on - strandat 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.323 kb on - strand, within EX28DRAFT_0991at 993.377 kb on - strand, within EX28DRAFT_0991at 993.712 kb on + strand, within EX28DRAFT_0991at 993.713 kb on - strand, within EX28DRAFT_0991at 993.791 kb on - strand, within EX28DRAFT_0991at 993.795 kb on + strand, within EX28DRAFT_0991

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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991,166 + EX28DRAFT_0989 0.17 +1.3
991,233 + EX28DRAFT_0989 0.23 -0.4
991,233 + EX28DRAFT_0989 0.23 +0.1
991,234 - EX28DRAFT_0989 0.23 +0.5
991,234 - EX28DRAFT_0989 0.23 -2.2
991,250 + EX28DRAFT_0989 0.25 +2.1
991,251 - EX28DRAFT_0989 0.25 -0.3
991,260 + EX28DRAFT_0989 0.26 -1.4
991,359 + EX28DRAFT_0989 0.35 -0.4
991,370 + EX28DRAFT_0989 0.36 -0.3
991,535 + EX28DRAFT_0989 0.51 -0.6
991,549 - EX28DRAFT_0989 0.52 +0.6
991,603 + EX28DRAFT_0989 0.57 +0.1
991,617 - EX28DRAFT_0989 0.59 -0.3
991,924 - EX28DRAFT_0989 0.87 -0.4
992,018 + +0.7
992,018 + -0.3
992,018 + +0.3
992,019 - -0.4
992,057 + +0.1
992,057 + +0.6
992,057 + +0.0
992,057 + -1.0
992,062 - -0.6
992,113 + -0.1
992,116 - -1.4
992,136 - +0.7
992,144 - +0.9
992,235 + EX28DRAFT_0990 0.11 -0.2
992,281 + EX28DRAFT_0990 0.17 -0.3
992,283 + EX28DRAFT_0990 0.17 +1.1
992,283 + EX28DRAFT_0990 0.17 -0.8
992,283 + EX28DRAFT_0990 0.17 -0.3
992,283 + EX28DRAFT_0990 0.17 +0.1
992,284 - EX28DRAFT_0990 0.17 +0.4
992,373 - EX28DRAFT_0990 0.27 +1.6
992,413 + EX28DRAFT_0990 0.31 +0.3
992,413 + EX28DRAFT_0990 0.31 -0.9
992,414 - EX28DRAFT_0990 0.31 +1.2
992,414 - EX28DRAFT_0990 0.31 +1.3
992,490 - EX28DRAFT_0990 0.39 +0.2
992,562 - EX28DRAFT_0990 0.47 +0.4
992,604 + EX28DRAFT_0990 0.52 -0.4
992,750 + EX28DRAFT_0990 0.68 -0.0
992,750 + EX28DRAFT_0990 0.68 +0.4
992,751 - EX28DRAFT_0990 0.68 +0.2
992,788 - EX28DRAFT_0990 0.72 -0.3
992,795 + EX28DRAFT_0990 0.73 -0.0
992,796 - EX28DRAFT_0990 0.73 +0.1
992,826 + EX28DRAFT_0990 0.76 +0.3
992,920 - EX28DRAFT_0990 0.86 -0.1
992,920 - EX28DRAFT_0990 0.86 +0.1
992,920 - EX28DRAFT_0990 0.86 +0.6
992,925 + EX28DRAFT_0990 0.87 +0.0
992,926 - EX28DRAFT_0990 0.87 -0.0
992,961 + -0.2
993,151 - -0.4
993,322 + EX28DRAFT_0991 0.24 +0.3
993,322 + EX28DRAFT_0991 0.24 +0.1
993,322 + EX28DRAFT_0991 0.24 +0.0
993,323 - EX28DRAFT_0991 0.24 -2.4
993,377 - EX28DRAFT_0991 0.29 -1.0
993,712 + EX28DRAFT_0991 0.63 +1.4
993,713 - EX28DRAFT_0991 0.63 +0.2
993,791 - EX28DRAFT_0991 0.70 -0.4
993,795 + EX28DRAFT_0991 0.71 +0.2

Or see this region's nucleotide sequence