Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0880

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0878 and EX28DRAFT_0879 are separated by 96 nucleotidesEX28DRAFT_0879 and EX28DRAFT_0880 are separated by 120 nucleotidesEX28DRAFT_0880 and EX28DRAFT_0881 are separated by 41 nucleotidesEX28DRAFT_0881 and EX28DRAFT_0882 are separated by 2 nucleotidesEX28DRAFT_0882 and EX28DRAFT_0883 are separated by 97 nucleotidesEX28DRAFT_0883 and EX28DRAFT_0884 overlap by 4 nucleotides EX28DRAFT_0878: EX28DRAFT_0878 - Site-specific recombinase XerD, at 890,296 to 891,306 _0878 EX28DRAFT_0879: EX28DRAFT_0879 - Helix-turn-helix, at 891,403 to 891,702 _0879 EX28DRAFT_0880: EX28DRAFT_0880 - Regulatory phage protein cox, at 891,823 to 892,101 _0880 EX28DRAFT_0881: EX28DRAFT_0881 - hypothetical protein, at 892,143 to 892,382 _0881 EX28DRAFT_0882: EX28DRAFT_0882 - hypothetical protein, at 892,385 to 892,573 _0882 EX28DRAFT_0883: EX28DRAFT_0883 - hypothetical protein, at 892,671 to 892,841 _0883 EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338 _0884 Position (kb) 891 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.880 kb on - strand, within EX28DRAFT_0878at 890.955 kb on + strand, within EX28DRAFT_0878at 890.955 kb on + strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.981 kb on + strand, within EX28DRAFT_0878at 891.106 kb on + strand, within EX28DRAFT_0878at 891.106 kb on + strand, within EX28DRAFT_0878at 891.107 kb on - strand, within EX28DRAFT_0878at 891.174 kb on + strand, within EX28DRAFT_0878at 891.174 kb on + strand, within EX28DRAFT_0878at 891.175 kb on - strand, within EX28DRAFT_0878at 891.177 kb on - strand, within EX28DRAFT_0878at 891.177 kb on - strand, within EX28DRAFT_0878at 891.183 kb on + strand, within EX28DRAFT_0878at 891.261 kb on + strandat 891.262 kb on - strandat 891.276 kb on - strandat 891.297 kb on + strandat 891.306 kb on + strandat 891.307 kb on - strandat 891.307 kb on - strandat 891.326 kb on - strandat 891.396 kb on + strandat 891.786 kb on - strandat 891.796 kb on - strandat 891.817 kb on + strandat 891.839 kb on + strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.843 kb on + strandat 891.843 kb on + strandat 891.882 kb on + strand, within EX28DRAFT_0880at 891.888 kb on + strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.985 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 892.030 kb on + strand, within EX28DRAFT_0880at 892.178 kb on + strand, within EX28DRAFT_0881at 892.179 kb on - strand, within EX28DRAFT_0881at 892.190 kb on + strand, within EX28DRAFT_0881at 892.326 kb on + strand, within EX28DRAFT_0881at 892.327 kb on - strand, within EX28DRAFT_0881at 892.376 kb on + strandat 892.377 kb on - strandat 892.377 kb on - strandat 892.386 kb on + strandat 892.386 kb on + strandat 892.387 kb on - strandat 892.387 kb on - strandat 892.387 kb on - strandat 892.394 kb on - strandat 892.408 kb on + strand, within EX28DRAFT_0882at 892.426 kb on + strand, within EX28DRAFT_0882at 892.426 kb on + strand, within EX28DRAFT_0882at 892.513 kb on + strand, within EX28DRAFT_0882at 892.547 kb on + strand, within EX28DRAFT_0882at 892.568 kb on - strandat 892.568 kb on - strandat 892.578 kb on + strandat 892.578 kb on + strandat 892.644 kb on + strandat 892.671 kb on - strandat 892.766 kb on - strand, within EX28DRAFT_0883at 892.766 kb on - strand, within EX28DRAFT_0883at 892.904 kb on + strand, within EX28DRAFT_0884at 892.905 kb on - strand, within EX28DRAFT_0884at 892.996 kb on - strand, within EX28DRAFT_0884

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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890,879 + EX28DRAFT_0878 0.58 -0.1
890,879 + EX28DRAFT_0878 0.58 +0.1
890,879 + EX28DRAFT_0878 0.58 -0.3
890,879 + EX28DRAFT_0878 0.58 -1.3
890,880 - EX28DRAFT_0878 0.58 -0.5
890,955 + EX28DRAFT_0878 0.65 +1.7
890,955 + EX28DRAFT_0878 0.65 +0.1
890,956 - EX28DRAFT_0878 0.65 +0.3
890,956 - EX28DRAFT_0878 0.65 -0.1
890,956 - EX28DRAFT_0878 0.65 -0.4
890,981 + EX28DRAFT_0878 0.68 +0.1
891,106 + EX28DRAFT_0878 0.80 -0.5
891,106 + EX28DRAFT_0878 0.80 +0.3
891,107 - EX28DRAFT_0878 0.80 -0.3
891,174 + EX28DRAFT_0878 0.87 +1.0
891,174 + EX28DRAFT_0878 0.87 -0.5
891,175 - EX28DRAFT_0878 0.87 +3.1
891,177 - EX28DRAFT_0878 0.87 -0.1
891,177 - EX28DRAFT_0878 0.87 -0.7
891,183 + EX28DRAFT_0878 0.88 -0.4
891,261 + -1.2
891,262 - -1.2
891,276 - +0.7
891,297 + -0.1
891,306 + -0.8
891,307 - +0.4
891,307 - -1.0
891,326 - +0.7
891,396 + +0.5
891,786 - -0.9
891,796 - +0.6
891,817 + -0.1
891,839 + -0.2
891,840 - +0.4
891,840 - +0.0
891,840 - +0.3
891,840 - -0.2
891,840 - -0.4
891,840 - -0.0
891,843 + +1.7
891,843 + +0.2
891,882 + EX28DRAFT_0880 0.21 -0.3
891,888 + EX28DRAFT_0880 0.23 +1.8
891,889 - EX28DRAFT_0880 0.24 +0.0
891,889 - EX28DRAFT_0880 0.24 +0.0
891,985 + EX28DRAFT_0880 0.58 -1.2
891,994 + EX28DRAFT_0880 0.61 +0.4
891,994 + EX28DRAFT_0880 0.61 +0.2
892,030 + EX28DRAFT_0880 0.74 +2.2
892,178 + EX28DRAFT_0881 0.15 +0.5
892,179 - EX28DRAFT_0881 0.15 -0.0
892,190 + EX28DRAFT_0881 0.20 +0.9
892,326 + EX28DRAFT_0881 0.76 +0.5
892,327 - EX28DRAFT_0881 0.77 +0.2
892,376 + -1.4
892,377 - +0.1
892,377 - +0.8
892,386 + +0.2
892,386 + +0.1
892,387 - -3.5
892,387 - +0.5
892,387 - +0.2
892,394 - +0.4
892,408 + EX28DRAFT_0882 0.12 +1.5
892,426 + EX28DRAFT_0882 0.22 -0.1
892,426 + EX28DRAFT_0882 0.22 -0.2
892,513 + EX28DRAFT_0882 0.68 +0.7
892,547 + EX28DRAFT_0882 0.86 -0.2
892,568 - +0.1
892,568 - -0.0
892,578 + -0.6
892,578 + +0.4
892,644 + -0.7
892,671 - -2.0
892,766 - EX28DRAFT_0883 0.56 +0.2
892,766 - EX28DRAFT_0883 0.56 -0.8
892,904 + EX28DRAFT_0884 0.13 +0.3
892,905 - EX28DRAFT_0884 0.13 -0.3
892,996 - EX28DRAFT_0884 0.32 -0.0

Or see this region's nucleotide sequence