Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0850

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0849 and EX28DRAFT_0850 are separated by 309 nucleotidesEX28DRAFT_0850 and EX28DRAFT_0851 are separated by 381 nucleotides EX28DRAFT_0849: EX28DRAFT_0849 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 856,918 to 858,714 _0849 EX28DRAFT_0850: EX28DRAFT_0850 - nitrite extrusion protein (nitrite facilitator), at 859,024 to 860,421 _0850 EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546 _0851 Position (kb) 859 860 861Strain fitness (log2 ratio) -1 0 1at 858.229 kb on - strand, within EX28DRAFT_0849at 858.282 kb on + strand, within EX28DRAFT_0849at 858.417 kb on + strand, within EX28DRAFT_0849at 858.596 kb on - strandat 858.605 kb on - strandat 858.697 kb on + strandat 858.698 kb on - strandat 858.714 kb on + strandat 858.714 kb on + strandat 858.715 kb on - strandat 858.781 kb on + strandat 858.782 kb on - strandat 858.783 kb on + strandat 858.846 kb on - strandat 858.980 kb on - strandat 858.988 kb on - strandat 859.023 kb on + strandat 859.024 kb on - strandat 859.121 kb on + strandat 859.121 kb on + strandat 859.136 kb on + strandat 859.224 kb on + strand, within EX28DRAFT_0850at 859.306 kb on - strand, within EX28DRAFT_0850at 859.405 kb on - strand, within EX28DRAFT_0850at 859.405 kb on - strand, within EX28DRAFT_0850at 859.429 kb on - strand, within EX28DRAFT_0850at 859.548 kb on + strand, within EX28DRAFT_0850at 859.549 kb on - strand, within EX28DRAFT_0850at 859.722 kb on + strand, within EX28DRAFT_0850at 859.723 kb on - strand, within EX28DRAFT_0850at 859.723 kb on - strand, within EX28DRAFT_0850at 859.810 kb on + strand, within EX28DRAFT_0850at 860.360 kb on - strandat 860.360 kb on - strandat 860.379 kb on + strandat 860.379 kb on + strandat 860.390 kb on + strandat 860.391 kb on - strandat 860.391 kb on - strandat 860.415 kb on + strandat 860.419 kb on + strandat 860.419 kb on + strandat 860.564 kb on - strandat 860.650 kb on + strandat 860.769 kb on + strandat 860.830 kb on + strandat 860.831 kb on - strandat 860.976 kb on + strandat 861.134 kb on - strandat 861.328 kb on + strand, within EX28DRAFT_0851at 861.329 kb on - strand, within EX28DRAFT_0851at 861.343 kb on + strand, within EX28DRAFT_0851at 861.344 kb on - strand, within EX28DRAFT_0851

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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858,229 - EX28DRAFT_0849 0.73 +0.2
858,282 + EX28DRAFT_0849 0.76 +0.3
858,417 + EX28DRAFT_0849 0.83 -0.2
858,596 - -1.1
858,605 - -1.4
858,697 + -0.4
858,698 - +0.4
858,714 + +0.0
858,714 + +0.4
858,715 - +0.6
858,781 + -0.6
858,782 - -0.5
858,783 + +0.4
858,846 - +0.1
858,980 - -0.3
858,988 - -0.4
859,023 + -0.3
859,024 - -0.2
859,121 + +0.3
859,121 + -1.2
859,136 + -0.1
859,224 + EX28DRAFT_0850 0.14 -0.5
859,306 - EX28DRAFT_0850 0.20 -0.3
859,405 - EX28DRAFT_0850 0.27 -0.2
859,405 - EX28DRAFT_0850 0.27 -0.8
859,429 - EX28DRAFT_0850 0.29 -0.4
859,548 + EX28DRAFT_0850 0.37 -0.5
859,549 - EX28DRAFT_0850 0.38 -0.3
859,722 + EX28DRAFT_0850 0.50 -0.0
859,723 - EX28DRAFT_0850 0.50 -0.2
859,723 - EX28DRAFT_0850 0.50 -0.0
859,810 + EX28DRAFT_0850 0.56 +0.1
860,360 - +0.6
860,360 - +0.0
860,379 + +0.2
860,379 + +0.3
860,390 + +0.2
860,391 - +0.8
860,391 - -0.5
860,415 + +0.7
860,419 + +0.2
860,419 + -1.0
860,564 - +0.2
860,650 + +1.1
860,769 + +0.3
860,830 + +0.1
860,831 - +0.5
860,976 + -1.0
861,134 - +1.3
861,328 + EX28DRAFT_0851 0.14 -0.5
861,329 - EX28DRAFT_0851 0.14 +0.3
861,343 + EX28DRAFT_0851 0.14 +0.3
861,344 - EX28DRAFT_0851 0.14 +0.6

Or see this region's nucleotide sequence