Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0548

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0546 and EX28DRAFT_0547 are separated by 119 nucleotidesEX28DRAFT_0547 and EX28DRAFT_0548 are separated by 92 nucleotidesEX28DRAFT_0548 and EX28DRAFT_0549 are separated by 158 nucleotidesEX28DRAFT_0549 and EX28DRAFT_0550 are separated by 46 nucleotidesEX28DRAFT_0550 and EX28DRAFT_0551 are separated by 53 nucleotides EX28DRAFT_0546: EX28DRAFT_0546 - D-alanyl-D-alanine carboxypeptidase, at 540,665 to 541,831 _0546 EX28DRAFT_0547: EX28DRAFT_0547 - DNA gyrase inhibitor, at 541,951 to 542,424 _0547 EX28DRAFT_0548: EX28DRAFT_0548 - Predicted membrane protein, at 542,517 to 543,575 _0548 EX28DRAFT_0549: EX28DRAFT_0549 - Uncharacterized protein conserved in bacteria, at 543,734 to 544,069 _0549 EX28DRAFT_0550: EX28DRAFT_0550 - Uncharacterized conserved protein, at 544,116 to 544,451 _0550 EX28DRAFT_0551: EX28DRAFT_0551 - tRNA, at 544,505 to 544,580 _0551 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2 3at 541.558 kb on + strand, within EX28DRAFT_0546at 541.724 kb on + strandat 541.725 kb on - strandat 541.725 kb on - strandat 541.830 kb on - strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.873 kb on + strandat 541.874 kb on - strandat 541.958 kb on - strandat 541.983 kb on + strandat 541.984 kb on - strandat 541.984 kb on - strandat 542.105 kb on - strand, within EX28DRAFT_0547at 542.105 kb on - strand, within EX28DRAFT_0547at 542.293 kb on - strand, within EX28DRAFT_0547at 542.293 kb on - strand, within EX28DRAFT_0547at 542.313 kb on + strand, within EX28DRAFT_0547at 542.313 kb on + strand, within EX28DRAFT_0547at 542.313 kb on + strand, within EX28DRAFT_0547at 542.314 kb on - strand, within EX28DRAFT_0547at 542.318 kb on - strand, within EX28DRAFT_0547at 542.395 kb on + strandat 542.395 kb on + strandat 542.395 kb on + strandat 542.395 kb on + strandat 542.396 kb on - strandat 542.396 kb on - strandat 542.412 kb on + strandat 542.413 kb on - strandat 542.501 kb on + strandat 542.537 kb on - strandat 542.559 kb on + strandat 542.560 kb on - strandat 542.620 kb on + strandat 542.888 kb on + strand, within EX28DRAFT_0548at 542.889 kb on - strand, within EX28DRAFT_0548at 543.029 kb on + strand, within EX28DRAFT_0548at 543.029 kb on + strand, within EX28DRAFT_0548at 543.046 kb on - strand, within EX28DRAFT_0548at 543.046 kb on - strand, within EX28DRAFT_0548at 543.376 kb on - strand, within EX28DRAFT_0548at 543.489 kb on - strandat 543.551 kb on + strandat 543.574 kb on - strandat 543.574 kb on - strandat 543.628 kb on - strandat 543.640 kb on + strandat 543.641 kb on - strandat 543.642 kb on + strandat 543.642 kb on + strandat 543.643 kb on - strandat 543.643 kb on - strandat 543.677 kb on + strandat 543.697 kb on + strandat 543.718 kb on + strandat 543.718 kb on + strandat 543.742 kb on + strandat 543.742 kb on + strandat 543.884 kb on + strand, within EX28DRAFT_0549at 543.884 kb on + strand, within EX28DRAFT_0549at 543.885 kb on - strand, within EX28DRAFT_0549at 543.885 kb on - strand, within EX28DRAFT_0549at 543.898 kb on + strand, within EX28DRAFT_0549at 543.898 kb on + strand, within EX28DRAFT_0549at 543.913 kb on + strand, within EX28DRAFT_0549at 543.914 kb on - strand, within EX28DRAFT_0549at 543.947 kb on + strand, within EX28DRAFT_0549at 543.968 kb on + strand, within EX28DRAFT_0549at 543.968 kb on + strand, within EX28DRAFT_0549at 543.969 kb on - strand, within EX28DRAFT_0549at 543.969 kb on - strand, within EX28DRAFT_0549at 544.083 kb on + strandat 544.084 kb on - strandat 544.259 kb on + strand, within EX28DRAFT_0550at 544.268 kb on - strand, within EX28DRAFT_0550at 544.398 kb on - strand, within EX28DRAFT_0550at 544.398 kb on - strand, within EX28DRAFT_0550at 544.398 kb on - strand, within EX28DRAFT_0550at 544.406 kb on + strand, within EX28DRAFT_0550at 544.406 kb on + strand, within EX28DRAFT_0550at 544.406 kb on + strand, within EX28DRAFT_0550at 544.407 kb on - strand, within EX28DRAFT_0550at 544.572 kb on + strand, within EX28DRAFT_0551

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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541,558 + EX28DRAFT_0546 0.77 +0.7
541,724 + +0.6
541,725 - +0.6
541,725 - +0.5
541,830 - -1.1
541,873 + -0.0
541,873 + -0.2
541,873 + +0.1
541,874 - +0.1
541,958 - +0.5
541,983 + -1.0
541,984 - +0.1
541,984 - +1.0
542,105 - EX28DRAFT_0547 0.32 +0.1
542,105 - EX28DRAFT_0547 0.32 +0.3
542,293 - EX28DRAFT_0547 0.72 -0.8
542,293 - EX28DRAFT_0547 0.72 -0.3
542,313 + EX28DRAFT_0547 0.76 -0.5
542,313 + EX28DRAFT_0547 0.76 -0.2
542,313 + EX28DRAFT_0547 0.76 -1.2
542,314 - EX28DRAFT_0547 0.77 +0.9
542,318 - EX28DRAFT_0547 0.77 +0.4
542,395 + -0.0
542,395 + +0.2
542,395 + +0.2
542,395 + -1.1
542,396 - +0.1
542,396 - -0.2
542,412 + -0.3
542,413 - +1.3
542,501 + -0.1
542,537 - +0.1
542,559 + +0.1
542,560 - +1.3
542,620 + -0.2
542,888 + EX28DRAFT_0548 0.35 +3.0
542,889 - EX28DRAFT_0548 0.35 -1.2
543,029 + EX28DRAFT_0548 0.48 -0.2
543,029 + EX28DRAFT_0548 0.48 -1.8
543,046 - EX28DRAFT_0548 0.50 +0.2
543,046 - EX28DRAFT_0548 0.50 -0.5
543,376 - EX28DRAFT_0548 0.81 -0.7
543,489 - +0.2
543,551 + +0.2
543,574 - -0.5
543,574 - -0.3
543,628 - -1.1
543,640 + +0.9
543,641 - +0.4
543,642 + +0.2
543,642 + -0.0
543,643 - +0.3
543,643 - +0.9
543,677 + -0.7
543,697 + +0.0
543,718 + -1.1
543,718 + +0.3
543,742 + -0.5
543,742 + +0.1
543,884 + EX28DRAFT_0549 0.45 +0.0
543,884 + EX28DRAFT_0549 0.45 +0.6
543,885 - EX28DRAFT_0549 0.45 +0.6
543,885 - EX28DRAFT_0549 0.45 +0.8
543,898 + EX28DRAFT_0549 0.49 +0.6
543,898 + EX28DRAFT_0549 0.49 -0.6
543,913 + EX28DRAFT_0549 0.53 +0.2
543,914 - EX28DRAFT_0549 0.54 +1.4
543,947 + EX28DRAFT_0549 0.63 +0.1
543,968 + EX28DRAFT_0549 0.70 -0.1
543,968 + EX28DRAFT_0549 0.70 -0.3
543,969 - EX28DRAFT_0549 0.70 +0.3
543,969 - EX28DRAFT_0549 0.70 -0.7
544,083 + -0.5
544,084 - -0.2
544,259 + EX28DRAFT_0550 0.43 -0.7
544,268 - EX28DRAFT_0550 0.45 +1.7
544,398 - EX28DRAFT_0550 0.84 +0.5
544,398 - EX28DRAFT_0550 0.84 -0.6
544,398 - EX28DRAFT_0550 0.84 -0.1
544,406 + EX28DRAFT_0550 0.86 +0.2
544,406 + EX28DRAFT_0550 0.86 +0.2
544,406 + EX28DRAFT_0550 0.86 -0.3
544,407 - EX28DRAFT_0550 0.87 -0.5
544,572 + EX28DRAFT_0551 0.88 +1.2

Or see this region's nucleotide sequence