Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0451

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0450 and EX28DRAFT_0451 are separated by 17 nucleotidesEX28DRAFT_0451 and EX28DRAFT_0452 are separated by 67 nucleotidesEX28DRAFT_0452 and EX28DRAFT_0453 are separated by 159 nucleotides EX28DRAFT_0450: EX28DRAFT_0450 - oligosaccharide:H+ symporter, at 432,841 to 434,082 _0450 EX28DRAFT_0451: EX28DRAFT_0451 - sucrose-6-phosphate hydrolase, at 434,100 to 435,533 _0451 EX28DRAFT_0452: EX28DRAFT_0452 - hypothetical protein, at 435,601 to 436,071 _0452 EX28DRAFT_0453: EX28DRAFT_0453 - YadA-like C-terminal region/Collagen triple helix repeat (20 copies), at 436,231 to 437,082 _0453 Position (kb) 434 435 436Strain fitness (log2 ratio) -1 0 1at 433.144 kb on - strand, within EX28DRAFT_0450at 433.530 kb on + strand, within EX28DRAFT_0450at 433.531 kb on - strand, within EX28DRAFT_0450at 433.534 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450at 433.609 kb on + strand, within EX28DRAFT_0450at 433.609 kb on + strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.610 kb on - strand, within EX28DRAFT_0450at 433.654 kb on - strand, within EX28DRAFT_0450at 433.734 kb on + strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.735 kb on - strand, within EX28DRAFT_0450at 433.788 kb on - strand, within EX28DRAFT_0450at 433.830 kb on + strand, within EX28DRAFT_0450at 433.834 kb on + strand, within EX28DRAFT_0450at 433.834 kb on + strand, within EX28DRAFT_0450at 433.835 kb on - strand, within EX28DRAFT_0450at 433.836 kb on + strand, within EX28DRAFT_0450at 433.836 kb on + strand, within EX28DRAFT_0450at 433.877 kb on - strand, within EX28DRAFT_0450at 433.880 kb on + strand, within EX28DRAFT_0450at 433.945 kb on + strand, within EX28DRAFT_0450at 433.945 kb on + strand, within EX28DRAFT_0450at 433.972 kb on + strandat 433.972 kb on + strandat 433.972 kb on + strandat 434.093 kb on + strandat 434.106 kb on + strandat 434.106 kb on + strandat 434.106 kb on + strandat 434.107 kb on - strandat 434.107 kb on - strandat 434.271 kb on + strand, within EX28DRAFT_0451at 434.323 kb on + strand, within EX28DRAFT_0451at 434.407 kb on + strand, within EX28DRAFT_0451at 434.408 kb on - strand, within EX28DRAFT_0451at 434.408 kb on - strand, within EX28DRAFT_0451at 434.445 kb on - strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.610 kb on + strand, within EX28DRAFT_0451at 434.611 kb on - strand, within EX28DRAFT_0451at 434.727 kb on + strand, within EX28DRAFT_0451at 434.728 kb on - strand, within EX28DRAFT_0451at 434.728 kb on - strand, within EX28DRAFT_0451at 434.729 kb on + strand, within EX28DRAFT_0451at 434.730 kb on - strand, within EX28DRAFT_0451at 434.730 kb on - strand, within EX28DRAFT_0451at 435.056 kb on + strand, within EX28DRAFT_0451at 435.137 kb on + strand, within EX28DRAFT_0451at 435.137 kb on + strand, within EX28DRAFT_0451at 435.138 kb on - strand, within EX28DRAFT_0451at 435.138 kb on - strand, within EX28DRAFT_0451at 435.138 kb on - strand, within EX28DRAFT_0451at 435.146 kb on + strand, within EX28DRAFT_0451at 435.216 kb on - strand, within EX28DRAFT_0451at 435.232 kb on - strand, within EX28DRAFT_0451at 435.235 kb on + strand, within EX28DRAFT_0451at 435.236 kb on + strand, within EX28DRAFT_0451at 435.264 kb on + strand, within EX28DRAFT_0451at 435.265 kb on - strand, within EX28DRAFT_0451at 435.527 kb on - strandat 435.540 kb on + strandat 435.657 kb on + strand, within EX28DRAFT_0452at 435.685 kb on - strand, within EX28DRAFT_0452at 435.757 kb on + strand, within EX28DRAFT_0452at 435.758 kb on - strand, within EX28DRAFT_0452at 435.760 kb on + strand, within EX28DRAFT_0452at 435.775 kb on - strand, within EX28DRAFT_0452at 435.778 kb on - strand, within EX28DRAFT_0452at 435.816 kb on + strand, within EX28DRAFT_0452at 435.921 kb on - strand, within EX28DRAFT_0452at 435.921 kb on - strand, within EX28DRAFT_0452at 435.951 kb on - strand, within EX28DRAFT_0452at 435.958 kb on - strand, within EX28DRAFT_0452at 436.085 kb on + strandat 436.090 kb on - strandat 436.111 kb on + strandat 436.115 kb on + strandat 436.129 kb on - strandat 436.131 kb on - strandat 436.142 kb on + strandat 436.146 kb on + strandat 436.147 kb on - strandat 436.171 kb on - strandat 436.174 kb on - strandat 436.208 kb on + strandat 436.309 kb on - strandat 436.309 kb on - strandat 436.361 kb on + strand, within EX28DRAFT_0453at 436.361 kb on + strand, within EX28DRAFT_0453at 436.414 kb on + strand, within EX28DRAFT_0453at 436.464 kb on + strand, within EX28DRAFT_0453at 436.467 kb on + strand, within EX28DRAFT_0453at 436.507 kb on - strand, within EX28DRAFT_0453at 436.515 kb on + strand, within EX28DRAFT_0453at 436.529 kb on - strand, within EX28DRAFT_0453

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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433,144 - EX28DRAFT_0450 0.24 +0.2
433,530 + EX28DRAFT_0450 0.55 -1.0
433,531 - EX28DRAFT_0450 0.56 +0.1
433,534 + EX28DRAFT_0450 0.56 +0.2
433,564 + EX28DRAFT_0450 0.58 -0.1
433,564 + EX28DRAFT_0450 0.58 -0.2
433,609 + EX28DRAFT_0450 0.62 -0.4
433,609 + EX28DRAFT_0450 0.62 -0.6
433,610 - EX28DRAFT_0450 0.62 -1.1
433,610 - EX28DRAFT_0450 0.62 -0.2
433,610 - EX28DRAFT_0450 0.62 -0.6
433,610 - EX28DRAFT_0450 0.62 -0.1
433,654 - EX28DRAFT_0450 0.65 +0.2
433,734 + EX28DRAFT_0450 0.72 +0.1
433,735 - EX28DRAFT_0450 0.72 -0.0
433,735 - EX28DRAFT_0450 0.72 +1.4
433,735 - EX28DRAFT_0450 0.72 +0.2
433,788 - EX28DRAFT_0450 0.76 +0.5
433,830 + EX28DRAFT_0450 0.80 -0.0
433,834 + EX28DRAFT_0450 0.80 -0.8
433,834 + EX28DRAFT_0450 0.80 -0.1
433,835 - EX28DRAFT_0450 0.80 +0.5
433,836 + EX28DRAFT_0450 0.80 +1.0
433,836 + EX28DRAFT_0450 0.80 +1.1
433,877 - EX28DRAFT_0450 0.83 +0.5
433,880 + EX28DRAFT_0450 0.84 -0.5
433,945 + EX28DRAFT_0450 0.89 -0.2
433,945 + EX28DRAFT_0450 0.89 +0.0
433,972 + +0.7
433,972 + -1.0
433,972 + +0.5
434,093 + +0.1
434,106 + -0.3
434,106 + +0.1
434,106 + +0.1
434,107 - -0.8
434,107 - -0.7
434,271 + EX28DRAFT_0451 0.12 -0.1
434,323 + EX28DRAFT_0451 0.16 -0.1
434,407 + EX28DRAFT_0451 0.21 -0.4
434,408 - EX28DRAFT_0451 0.21 -0.8
434,408 - EX28DRAFT_0451 0.21 +0.4
434,445 - EX28DRAFT_0451 0.24 -0.3
434,610 + EX28DRAFT_0451 0.36 -1.1
434,610 + EX28DRAFT_0451 0.36 -0.4
434,610 + EX28DRAFT_0451 0.36 +0.0
434,611 - EX28DRAFT_0451 0.36 +0.3
434,727 + EX28DRAFT_0451 0.44 -0.7
434,728 - EX28DRAFT_0451 0.44 -0.2
434,728 - EX28DRAFT_0451 0.44 -0.3
434,729 + EX28DRAFT_0451 0.44 +0.5
434,730 - EX28DRAFT_0451 0.44 -0.8
434,730 - EX28DRAFT_0451 0.44 -0.0
435,056 + EX28DRAFT_0451 0.67 +0.2
435,137 + EX28DRAFT_0451 0.72 +0.4
435,137 + EX28DRAFT_0451 0.72 -0.1
435,138 - EX28DRAFT_0451 0.72 +0.1
435,138 - EX28DRAFT_0451 0.72 -0.0
435,138 - EX28DRAFT_0451 0.72 -0.6
435,146 + EX28DRAFT_0451 0.73 +0.1
435,216 - EX28DRAFT_0451 0.78 -0.4
435,232 - EX28DRAFT_0451 0.79 +1.2
435,235 + EX28DRAFT_0451 0.79 -0.2
435,236 + EX28DRAFT_0451 0.79 -0.1
435,264 + EX28DRAFT_0451 0.81 -0.4
435,265 - EX28DRAFT_0451 0.81 -0.9
435,527 - +0.2
435,540 + -0.8
435,657 + EX28DRAFT_0452 0.12 -0.3
435,685 - EX28DRAFT_0452 0.18 +0.6
435,757 + EX28DRAFT_0452 0.33 -0.0
435,758 - EX28DRAFT_0452 0.33 -0.9
435,760 + EX28DRAFT_0452 0.34 +0.4
435,775 - EX28DRAFT_0452 0.37 +0.2
435,778 - EX28DRAFT_0452 0.38 -1.0
435,816 + EX28DRAFT_0452 0.46 -0.0
435,921 - EX28DRAFT_0452 0.68 -0.5
435,921 - EX28DRAFT_0452 0.68 +0.0
435,951 - EX28DRAFT_0452 0.74 -0.1
435,958 - EX28DRAFT_0452 0.76 -0.1
436,085 + -0.5
436,090 - +0.1
436,111 + +0.3
436,115 + -1.1
436,129 - -0.1
436,131 - +0.5
436,142 + +1.6
436,146 + +0.0
436,147 - +0.2
436,171 - +0.3
436,174 - +0.6
436,208 + +0.3
436,309 - +0.3
436,309 - -1.0
436,361 + EX28DRAFT_0453 0.15 +1.1
436,361 + EX28DRAFT_0453 0.15 -0.1
436,414 + EX28DRAFT_0453 0.21 +0.1
436,464 + EX28DRAFT_0453 0.27 -0.2
436,467 + EX28DRAFT_0453 0.28 +0.1
436,507 - EX28DRAFT_0453 0.32 -0.7
436,515 + EX28DRAFT_0453 0.33 +0.6
436,529 - EX28DRAFT_0453 0.35 -0.6

Or see this region's nucleotide sequence