Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0402

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0401 and EX28DRAFT_0402 are separated by 111 nucleotidesEX28DRAFT_0402 and EX28DRAFT_0403 are separated by 138 nucleotides EX28DRAFT_0401: EX28DRAFT_0401 - Outer membrane receptor for ferrienterochelin and colicins, at 376,759 to 378,729 _0401 EX28DRAFT_0402: EX28DRAFT_0402 - S-formylglutathione hydrolase, at 378,841 to 379,668 _0402 EX28DRAFT_0403: EX28DRAFT_0403 - Protein of unknown function (DUF1228), at 379,807 to 380,955 _0403 Position (kb) 378 379 380Strain fitness (log2 ratio) -1 0 1at 377.918 kb on + strand, within EX28DRAFT_0401at 377.919 kb on + strand, within EX28DRAFT_0401at 377.919 kb on + strand, within EX28DRAFT_0401at 377.920 kb on - strand, within EX28DRAFT_0401at 377.960 kb on - strand, within EX28DRAFT_0401at 378.133 kb on + strand, within EX28DRAFT_0401at 378.195 kb on + strand, within EX28DRAFT_0401at 378.259 kb on - strand, within EX28DRAFT_0401at 378.262 kb on + strand, within EX28DRAFT_0401at 378.262 kb on + strand, within EX28DRAFT_0401at 378.263 kb on - strand, within EX28DRAFT_0401at 378.263 kb on - strand, within EX28DRAFT_0401at 378.292 kb on - strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.304 kb on + strand, within EX28DRAFT_0401at 378.388 kb on + strand, within EX28DRAFT_0401at 378.394 kb on + strand, within EX28DRAFT_0401at 378.395 kb on - strand, within EX28DRAFT_0401at 378.506 kb on - strand, within EX28DRAFT_0401at 378.520 kb on + strand, within EX28DRAFT_0401at 378.521 kb on - strand, within EX28DRAFT_0401at 378.606 kb on - strandat 378.673 kb on + strandat 378.679 kb on + strandat 378.719 kb on - strandat 378.720 kb on + strandat 378.720 kb on + strandat 378.721 kb on - strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.760 kb on + strandat 378.761 kb on - strandat 378.761 kb on - strandat 378.885 kb on + strandat 378.902 kb on + strandat 378.902 kb on + strandat 378.903 kb on - strandat 378.903 kb on - strandat 378.906 kb on - strandat 378.906 kb on - strandat 379.319 kb on + strand, within EX28DRAFT_0402at 379.320 kb on - strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.325 kb on + strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.326 kb on - strand, within EX28DRAFT_0402at 379.458 kb on + strand, within EX28DRAFT_0402at 379.700 kb on - strandat 379.708 kb on + strandat 379.709 kb on - strandat 379.709 kb on - strandat 379.712 kb on - strandat 379.712 kb on - strandat 379.712 kb on - strandat 379.736 kb on + strandat 379.819 kb on - strandat 379.819 kb on - strandat 379.878 kb on + strandat 379.918 kb on - strandat 379.954 kb on + strand, within EX28DRAFT_0403at 379.955 kb on - strand, within EX28DRAFT_0403at 379.955 kb on - strand, within EX28DRAFT_0403at 380.251 kb on + strand, within EX28DRAFT_0403at 380.252 kb on - strand, within EX28DRAFT_0403at 380.254 kb on - strand, within EX28DRAFT_0403at 380.319 kb on - strand, within EX28DRAFT_0403at 380.319 kb on - strand, within EX28DRAFT_0403at 380.408 kb on + strand, within EX28DRAFT_0403at 380.428 kb on + strand, within EX28DRAFT_0403at 380.450 kb on - strand, within EX28DRAFT_0403

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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377,918 + EX28DRAFT_0401 0.59 -0.1
377,919 + EX28DRAFT_0401 0.59 +0.5
377,919 + EX28DRAFT_0401 0.59 -0.3
377,920 - EX28DRAFT_0401 0.59 +0.8
377,960 - EX28DRAFT_0401 0.61 -0.3
378,133 + EX28DRAFT_0401 0.70 -0.2
378,195 + EX28DRAFT_0401 0.73 +0.2
378,259 - EX28DRAFT_0401 0.76 +0.2
378,262 + EX28DRAFT_0401 0.76 -0.1
378,262 + EX28DRAFT_0401 0.76 +0.1
378,263 - EX28DRAFT_0401 0.76 -0.0
378,263 - EX28DRAFT_0401 0.76 -0.5
378,292 - EX28DRAFT_0401 0.78 -0.3
378,304 + EX28DRAFT_0401 0.78 -1.0
378,304 + EX28DRAFT_0401 0.78 +1.5
378,304 + EX28DRAFT_0401 0.78 -0.5
378,304 + EX28DRAFT_0401 0.78 -0.1
378,388 + EX28DRAFT_0401 0.83 -0.5
378,394 + EX28DRAFT_0401 0.83 +0.1
378,395 - EX28DRAFT_0401 0.83 -0.4
378,506 - EX28DRAFT_0401 0.89 -0.1
378,520 + EX28DRAFT_0401 0.89 -0.5
378,521 - EX28DRAFT_0401 0.89 +1.0
378,606 - +0.3
378,673 + +0.5
378,679 + -0.1
378,719 - +1.0
378,720 + +0.9
378,720 + +1.3
378,721 - -0.0
378,760 + -0.0
378,760 + +0.2
378,760 + -0.3
378,760 + +0.1
378,761 - -0.8
378,761 - -0.8
378,885 + +0.8
378,902 + -0.0
378,902 + -0.6
378,903 - -0.1
378,903 - +1.0
378,906 - -0.4
378,906 - +0.1
379,319 + EX28DRAFT_0402 0.58 +0.3
379,320 - EX28DRAFT_0402 0.58 +0.2
379,325 + EX28DRAFT_0402 0.58 +0.1
379,325 + EX28DRAFT_0402 0.58 +0.7
379,325 + EX28DRAFT_0402 0.58 +0.7
379,326 - EX28DRAFT_0402 0.59 +0.1
379,326 - EX28DRAFT_0402 0.59 +0.9
379,326 - EX28DRAFT_0402 0.59 -1.2
379,458 + EX28DRAFT_0402 0.75 +1.2
379,700 - +0.1
379,708 + -0.6
379,709 - +0.3
379,709 - +0.0
379,712 - -0.3
379,712 - -0.3
379,712 - +0.1
379,736 + -0.7
379,819 - +0.7
379,819 - -0.2
379,878 + +0.1
379,918 - -0.1
379,954 + EX28DRAFT_0403 0.13 +0.5
379,955 - EX28DRAFT_0403 0.13 +0.6
379,955 - EX28DRAFT_0403 0.13 +0.7
380,251 + EX28DRAFT_0403 0.39 +0.0
380,252 - EX28DRAFT_0403 0.39 -0.2
380,254 - EX28DRAFT_0403 0.39 +0.4
380,319 - EX28DRAFT_0403 0.45 -1.4
380,319 - EX28DRAFT_0403 0.45 +0.5
380,408 + EX28DRAFT_0403 0.52 +0.8
380,428 + EX28DRAFT_0403 0.54 +1.3
380,450 - EX28DRAFT_0403 0.56 -0.2

Or see this region's nucleotide sequence