Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0361

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0359 and EX28DRAFT_0360 are separated by 325 nucleotidesEX28DRAFT_0360 and EX28DRAFT_0361 are separated by 324 nucleotidesEX28DRAFT_0361 and EX28DRAFT_0362 are separated by 114 nucleotides EX28DRAFT_0359: EX28DRAFT_0359 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain, at 327,732 to 330,404 _0359 EX28DRAFT_0360: EX28DRAFT_0360 - RNA, at 330,730 to 330,823 _0360 EX28DRAFT_0361: EX28DRAFT_0361 - Outer membrane protein (porin), at 331,148 to 332,263 _0361 EX28DRAFT_0362: EX28DRAFT_0362 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 332,378 to 333,433 _0362 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 330.174 kb on - strandat 330.209 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.214 kb on - strandat 330.214 kb on - strandat 330.253 kb on + strandat 330.253 kb on + strandat 330.260 kb on + strandat 330.292 kb on - strandat 330.292 kb on - strandat 330.292 kb on - strandat 330.387 kb on - strandat 330.409 kb on - strandat 330.453 kb on + strandat 330.453 kb on + strandat 330.454 kb on - strandat 330.463 kb on + strandat 330.463 kb on + strandat 330.463 kb on + strandat 330.464 kb on - strandat 330.464 kb on - strandat 330.560 kb on - strandat 330.626 kb on - strandat 330.804 kb on + strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.829 kb on + strandat 330.963 kb on - strandat 331.119 kb on + strandat 331.121 kb on + strandat 331.121 kb on + strandat 331.129 kb on - strandat 331.129 kb on - strandat 331.130 kb on + strandat 331.130 kb on + strandat 331.130 kb on + strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.145 kb on - strandat 331.156 kb on + strandat 331.162 kb on - strandat 331.162 kb on - strandat 331.162 kb on - strandat 331.242 kb on + strandat 331.243 kb on - strandat 331.274 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.314 kb on - strand, within EX28DRAFT_0361at 331.487 kb on - strand, within EX28DRAFT_0361at 331.491 kb on - strand, within EX28DRAFT_0361at 331.510 kb on - strand, within EX28DRAFT_0361at 331.554 kb on - strand, within EX28DRAFT_0361at 331.656 kb on - strand, within EX28DRAFT_0361at 331.677 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361at 331.865 kb on + strand, within EX28DRAFT_0361at 331.866 kb on - strand, within EX28DRAFT_0361at 331.884 kb on - strand, within EX28DRAFT_0361at 331.901 kb on + strand, within EX28DRAFT_0361at 331.901 kb on + strand, within EX28DRAFT_0361at 331.902 kb on - strand, within EX28DRAFT_0361at 331.902 kb on - strand, within EX28DRAFT_0361at 331.917 kb on - strand, within EX28DRAFT_0361at 331.974 kb on - strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.055 kb on - strand, within EX28DRAFT_0361at 332.066 kb on - strand, within EX28DRAFT_0361at 332.112 kb on - strand, within EX28DRAFT_0361at 332.132 kb on + strand, within EX28DRAFT_0361at 332.133 kb on - strand, within EX28DRAFT_0361at 332.135 kb on + strand, within EX28DRAFT_0361at 332.136 kb on - strand, within EX28DRAFT_0361at 332.159 kb on + strandat 332.159 kb on + strandat 332.159 kb on + strandat 332.160 kb on - strandat 332.261 kb on + strandat 332.262 kb on - strandat 332.282 kb on + strandat 332.282 kb on + strandat 332.283 kb on - strandat 332.370 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.394 kb on + strandat 332.539 kb on + strand, within EX28DRAFT_0362at 332.707 kb on + strand, within EX28DRAFT_0362at 332.722 kb on + strand, within EX28DRAFT_0362at 332.888 kb on + strand, within EX28DRAFT_0362at 332.888 kb on + strand, within EX28DRAFT_0362at 332.889 kb on - strand, within EX28DRAFT_0362at 332.889 kb on - strand, within EX28DRAFT_0362at 332.945 kb on + strand, within EX28DRAFT_0362at 333.136 kb on + strand, within EX28DRAFT_0362at 333.137 kb on - strand, within EX28DRAFT_0362at 333.158 kb on + strand, within EX28DRAFT_0362at 333.181 kb on + strand, within EX28DRAFT_0362at 333.181 kb on + strand, within EX28DRAFT_0362at 333.182 kb on - strand, within EX28DRAFT_0362at 333.182 kb on - strand, within EX28DRAFT_0362

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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330,174 - +2.8
330,209 + -2.2
330,213 + -0.2
330,213 + -0.0
330,213 + -1.1
330,213 + +0.2
330,214 - -0.1
330,214 - +0.2
330,253 + +0.3
330,253 + +0.1
330,260 + -0.1
330,292 - -0.2
330,292 - +0.4
330,292 - -0.4
330,387 - -0.5
330,409 - +0.0
330,453 + +0.1
330,453 + -0.2
330,454 - -0.7
330,463 + +0.1
330,463 + -0.0
330,463 + +0.4
330,464 - +0.4
330,464 - -0.2
330,560 - +0.1
330,626 - -2.0
330,804 + EX28DRAFT_0360 0.79 -0.6
330,805 - EX28DRAFT_0360 0.80 -0.9
330,805 - EX28DRAFT_0360 0.80 +0.1
330,805 - EX28DRAFT_0360 0.80 +1.1
330,805 - EX28DRAFT_0360 0.80 +0.6
330,829 + +0.2
330,963 - +0.4
331,119 + +1.1
331,121 + -0.2
331,121 + -2.0
331,129 - -0.1
331,129 - -0.3
331,130 + +0.3
331,130 + +0.1
331,130 + +0.4
331,131 - -0.2
331,131 - +0.3
331,131 - +0.2
331,131 - -0.3
331,145 - -0.2
331,156 + -0.3
331,162 - -0.8
331,162 - +0.3
331,162 - +0.5
331,242 + +0.2
331,243 - +0.1
331,274 + EX28DRAFT_0361 0.11 -0.2
331,313 + EX28DRAFT_0361 0.15 +0.2
331,313 + EX28DRAFT_0361 0.15 +0.7
331,313 + EX28DRAFT_0361 0.15 -0.3
331,313 + EX28DRAFT_0361 0.15 -0.9
331,314 - EX28DRAFT_0361 0.15 +0.3
331,487 - EX28DRAFT_0361 0.30 -0.4
331,491 - EX28DRAFT_0361 0.31 -0.5
331,510 - EX28DRAFT_0361 0.32 -0.3
331,554 - EX28DRAFT_0361 0.36 -0.4
331,656 - EX28DRAFT_0361 0.46 +0.5
331,677 + EX28DRAFT_0361 0.47 +0.2
331,748 + EX28DRAFT_0361 0.54 -0.6
331,748 + EX28DRAFT_0361 0.54 -0.0
331,749 - EX28DRAFT_0361 0.54 -0.6
331,749 - EX28DRAFT_0361 0.54 +0.1
331,865 + EX28DRAFT_0361 0.64 +0.3
331,866 - EX28DRAFT_0361 0.64 -0.8
331,884 - EX28DRAFT_0361 0.66 +0.5
331,901 + EX28DRAFT_0361 0.67 +0.0
331,901 + EX28DRAFT_0361 0.67 +0.2
331,902 - EX28DRAFT_0361 0.68 -0.2
331,902 - EX28DRAFT_0361 0.68 +0.4
331,917 - EX28DRAFT_0361 0.69 -0.1
331,974 - EX28DRAFT_0361 0.74 -1.6
332,054 + EX28DRAFT_0361 0.81 -0.3
332,054 + EX28DRAFT_0361 0.81 -0.9
332,054 + EX28DRAFT_0361 0.81 -0.1
332,055 - EX28DRAFT_0361 0.81 -0.2
332,066 - EX28DRAFT_0361 0.82 -3.3
332,112 - EX28DRAFT_0361 0.86 -0.0
332,132 + EX28DRAFT_0361 0.88 +0.2
332,133 - EX28DRAFT_0361 0.88 -0.1
332,135 + EX28DRAFT_0361 0.88 -0.5
332,136 - EX28DRAFT_0361 0.89 -0.7
332,159 + -3.1
332,159 + -0.5
332,159 + +0.5
332,160 - -0.1
332,261 + -0.6
332,262 - +1.4
332,282 + +0.5
332,282 + -0.9
332,283 - -1.2
332,370 - -0.4
332,373 - +0.1
332,373 - +0.0
332,373 - -1.2
332,373 - +0.3
332,394 + +0.6
332,539 + EX28DRAFT_0362 0.15 +0.6
332,707 + EX28DRAFT_0362 0.31 +0.2
332,722 + EX28DRAFT_0362 0.33 +0.4
332,888 + EX28DRAFT_0362 0.48 +0.1
332,888 + EX28DRAFT_0362 0.48 -2.0
332,889 - EX28DRAFT_0362 0.48 -0.1
332,889 - EX28DRAFT_0362 0.48 +0.3
332,945 + EX28DRAFT_0362 0.54 -0.2
333,136 + EX28DRAFT_0362 0.72 -0.2
333,137 - EX28DRAFT_0362 0.72 +0.0
333,158 + EX28DRAFT_0362 0.74 -0.3
333,181 + EX28DRAFT_0362 0.76 -0.3
333,181 + EX28DRAFT_0362 0.76 -0.0
333,182 - EX28DRAFT_0362 0.76 +0.4
333,182 - EX28DRAFT_0362 0.76 -0.1

Or see this region's nucleotide sequence