Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0357 and EX28DRAFT_0358 are separated by 90 nucleotides EX28DRAFT_0358 and EX28DRAFT_0359 are separated by 16 nucleotides EX28DRAFT_0359 and EX28DRAFT_0360 are separated by 325 nucleotides EX28DRAFT_0360 and EX28DRAFT_0361 are separated by 324 nucleotides
EX28DRAFT_0357: EX28DRAFT_0357 - Signal transduction histidine kinase, at 324,128 to 326,974
_0357
EX28DRAFT_0358: EX28DRAFT_0358 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 327,065 to 327,715
_0358
EX28DRAFT_0359: EX28DRAFT_0359 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain, at 327,732 to 330,404
_0359
EX28DRAFT_0360: EX28DRAFT_0360 - RNA, at 330,730 to 330,823
_0360
EX28DRAFT_0361: EX28DRAFT_0361 - Outer membrane protein (porin), at 331,148 to 332,263
_0361
Position (kb) 327
328
329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 327.105 kb on + strand at 327.106 kb on - strand at 327.106 kb on - strand at 327.106 kb on - strand at 327.106 kb on - strand at 327.106 kb on - strand at 327.106 kb on - strand at 327.179 kb on - strand, within EX28DRAFT_0358 at 327.493 kb on + strand, within EX28DRAFT_0358 at 327.493 kb on + strand, within EX28DRAFT_0358 at 327.494 kb on - strand, within EX28DRAFT_0358 at 327.494 kb on - strand, within EX28DRAFT_0358 at 327.499 kb on - strand, within EX28DRAFT_0358 at 327.499 kb on - strand, within EX28DRAFT_0358 at 327.525 kb on + strand, within EX28DRAFT_0358 at 327.525 kb on + strand, within EX28DRAFT_0358 at 327.526 kb on - strand, within EX28DRAFT_0358 at 327.526 kb on - strand, within EX28DRAFT_0358 at 327.601 kb on + strand, within EX28DRAFT_0358 at 327.602 kb on - strand, within EX28DRAFT_0358 at 327.624 kb on - strand, within EX28DRAFT_0358 at 327.672 kb on - strand at 327.698 kb on + strand at 327.698 kb on + strand at 327.698 kb on + strand at 327.717 kb on + strand at 327.717 kb on + strand at 327.718 kb on - strand at 327.718 kb on - strand at 327.718 kb on - strand at 327.718 kb on - strand at 327.718 kb on - strand at 327.720 kb on - strand at 327.720 kb on - strand at 327.734 kb on - strand at 327.752 kb on - strand at 327.772 kb on + strand at 327.772 kb on + strand at 327.807 kb on + strand at 327.808 kb on - strand at 327.829 kb on - strand at 327.852 kb on - strand at 327.928 kb on + strand at 327.928 kb on + strand at 327.928 kb on + strand at 327.929 kb on - strand at 327.929 kb on - strand at 327.929 kb on - strand at 327.929 kb on - strand at 327.929 kb on - strand at 327.939 kb on - strand at 327.952 kb on - strand at 327.956 kb on + strand at 327.973 kb on + strand at 327.973 kb on + strand at 328.056 kb on + strand, within EX28DRAFT_0359 at 328.059 kb on + strand, within EX28DRAFT_0359 at 328.060 kb on - strand, within EX28DRAFT_0359 at 328.060 kb on - strand, within EX28DRAFT_0359 at 328.060 kb on - strand, within EX28DRAFT_0359 at 328.065 kb on + strand, within EX28DRAFT_0359 at 328.065 kb on + strand, within EX28DRAFT_0359 at 328.065 kb on + strand, within EX28DRAFT_0359 at 328.092 kb on + strand, within EX28DRAFT_0359 at 328.092 kb on + strand, within EX28DRAFT_0359 at 328.093 kb on - strand, within EX28DRAFT_0359 at 328.094 kb on + strand, within EX28DRAFT_0359 at 328.095 kb on - strand, within EX28DRAFT_0359 at 328.095 kb on - strand, within EX28DRAFT_0359 at 328.097 kb on + strand, within EX28DRAFT_0359 at 328.098 kb on - strand, within EX28DRAFT_0359 at 328.155 kb on + strand, within EX28DRAFT_0359 at 328.182 kb on - strand, within EX28DRAFT_0359 at 328.284 kb on - strand, within EX28DRAFT_0359 at 328.737 kb on - strand, within EX28DRAFT_0359 at 329.036 kb on - strand, within EX28DRAFT_0359 at 329.097 kb on - strand, within EX28DRAFT_0359 at 329.149 kb on + strand, within EX28DRAFT_0359 at 329.149 kb on + strand, within EX28DRAFT_0359 at 329.150 kb on - strand, within EX28DRAFT_0359 at 329.222 kb on + strand, within EX28DRAFT_0359 at 329.267 kb on + strand, within EX28DRAFT_0359 at 329.268 kb on - strand, within EX28DRAFT_0359 at 329.293 kb on - strand, within EX28DRAFT_0359 at 329.293 kb on - strand, within EX28DRAFT_0359 at 329.293 kb on - strand, within EX28DRAFT_0359 at 329.293 kb on - strand, within EX28DRAFT_0359 at 329.453 kb on + strand, within EX28DRAFT_0359 at 329.477 kb on + strand, within EX28DRAFT_0359 at 329.691 kb on + strand, within EX28DRAFT_0359 at 329.692 kb on - strand, within EX28DRAFT_0359 at 329.765 kb on + strand, within EX28DRAFT_0359 at 329.771 kb on - strand, within EX28DRAFT_0359 at 329.965 kb on + strand, within EX28DRAFT_0359 at 329.966 kb on - strand, within EX28DRAFT_0359 at 329.968 kb on + strand, within EX28DRAFT_0359 at 329.969 kb on - strand, within EX28DRAFT_0359 at 329.969 kb on - strand, within EX28DRAFT_0359 at 330.014 kb on - strand, within EX28DRAFT_0359 at 330.069 kb on - strand, within EX28DRAFT_0359 at 330.106 kb on + strand, within EX28DRAFT_0359 at 330.107 kb on - strand, within EX28DRAFT_0359 at 330.174 kb on - strand at 330.209 kb on + strand at 330.213 kb on + strand at 330.213 kb on + strand at 330.213 kb on + strand at 330.213 kb on + strand at 330.214 kb on - strand at 330.214 kb on - strand at 330.253 kb on + strand at 330.253 kb on + strand at 330.260 kb on + strand at 330.292 kb on - strand at 330.292 kb on - strand at 330.292 kb on - strand at 330.387 kb on - strand at 330.409 kb on - strand at 330.453 kb on + strand at 330.453 kb on + strand at 330.454 kb on - strand at 330.463 kb on + strand at 330.463 kb on + strand at 330.463 kb on + strand at 330.464 kb on - strand at 330.464 kb on - strand at 330.560 kb on - strand at 330.626 kb on - strand at 330.804 kb on + strand, within EX28DRAFT_0360 at 330.805 kb on - strand, within EX28DRAFT_0360 at 330.805 kb on - strand, within EX28DRAFT_0360 at 330.805 kb on - strand, within EX28DRAFT_0360 at 330.805 kb on - strand, within EX28DRAFT_0360 at 330.829 kb on + strand at 330.963 kb on - strand at 331.119 kb on + strand at 331.121 kb on + strand at 331.121 kb on + strand at 331.129 kb on - strand at 331.129 kb on - strand at 331.130 kb on + strand at 331.130 kb on + strand at 331.130 kb on + strand at 331.131 kb on - strand at 331.131 kb on - strand at 331.131 kb on - strand at 331.131 kb on - strand at 331.145 kb on - strand at 331.156 kb on + strand at 331.162 kb on - strand at 331.162 kb on - strand at 331.162 kb on - strand at 331.242 kb on + strand at 331.243 kb on - strand at 331.274 kb on + strand, within EX28DRAFT_0361 at 331.313 kb on + strand, within EX28DRAFT_0361 at 331.313 kb on + strand, within EX28DRAFT_0361 at 331.313 kb on + strand, within EX28DRAFT_0361 at 331.313 kb on + strand, within EX28DRAFT_0361 at 331.314 kb on - strand, within EX28DRAFT_0361
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 327,105 + +1.6 327,106 - +1.1 327,106 - +0.8 327,106 - +0.5 327,106 - +0.0 327,106 - +0.3 327,106 - +0.9 327,179 - EX28DRAFT_0358 0.18 +0.3 327,493 + EX28DRAFT_0358 0.66 -0.8 327,493 + EX28DRAFT_0358 0.66 +0.5 327,494 - EX28DRAFT_0358 0.66 +0.1 327,494 - EX28DRAFT_0358 0.66 +1.1 327,499 - EX28DRAFT_0358 0.67 +0.6 327,499 - EX28DRAFT_0358 0.67 +0.1 327,525 + EX28DRAFT_0358 0.71 -0.3 327,525 + EX28DRAFT_0358 0.71 +0.1 327,526 - EX28DRAFT_0358 0.71 -1.4 327,526 - EX28DRAFT_0358 0.71 +0.8 327,601 + EX28DRAFT_0358 0.82 +1.2 327,602 - EX28DRAFT_0358 0.82 +1.6 327,624 - EX28DRAFT_0358 0.86 +1.0 327,672 - +2.3 327,698 + +0.4 327,698 + +1.5 327,698 + +0.1 327,717 + -0.5 327,717 + +0.1 327,718 - +0.5 327,718 - -0.4 327,718 - -0.6 327,718 - -0.0 327,718 - +0.4 327,720 - -2.5 327,720 - +0.0 327,734 - +0.8 327,752 - -0.3 327,772 + +0.2 327,772 + +0.4 327,807 + +0.1 327,808 - -0.1 327,829 - +0.2 327,852 - +0.1 327,928 + +0.7 327,928 + +0.2 327,928 + +0.0 327,929 - -0.6 327,929 - +0.5 327,929 - +0.0 327,929 - +0.3 327,929 - -0.9 327,939 - +0.2 327,952 - -0.3 327,956 + +0.1 327,973 + +0.5 327,973 + +0.4 328,056 + EX28DRAFT_0359 0.12 -0.0 328,059 + EX28DRAFT_0359 0.12 -0.9 328,060 - EX28DRAFT_0359 0.12 -0.1 328,060 - EX28DRAFT_0359 0.12 -0.5 328,060 - EX28DRAFT_0359 0.12 +0.2 328,065 + EX28DRAFT_0359 0.12 +0.8 328,065 + EX28DRAFT_0359 0.12 +1.4 328,065 + EX28DRAFT_0359 0.12 -0.3 328,092 + EX28DRAFT_0359 0.13 +0.5 328,092 + EX28DRAFT_0359 0.13 -0.1 328,093 - EX28DRAFT_0359 0.14 -0.3 328,094 + EX28DRAFT_0359 0.14 -0.3 328,095 - EX28DRAFT_0359 0.14 -0.3 328,095 - EX28DRAFT_0359 0.14 +1.1 328,097 + EX28DRAFT_0359 0.14 -0.9 328,098 - EX28DRAFT_0359 0.14 +0.0 328,155 + EX28DRAFT_0359 0.16 -1.0 328,182 - EX28DRAFT_0359 0.17 +1.3 328,284 - EX28DRAFT_0359 0.21 -0.9 328,737 - EX28DRAFT_0359 0.38 -0.3 329,036 - EX28DRAFT_0359 0.49 +1.5 329,097 - EX28DRAFT_0359 0.51 -2.8 329,149 + EX28DRAFT_0359 0.53 -1.2 329,149 + EX28DRAFT_0359 0.53 -0.5 329,150 - EX28DRAFT_0359 0.53 +0.3 329,222 + EX28DRAFT_0359 0.56 +0.0 329,267 + EX28DRAFT_0359 0.57 -0.3 329,268 - EX28DRAFT_0359 0.57 -0.2 329,293 - EX28DRAFT_0359 0.58 +0.0 329,293 - EX28DRAFT_0359 0.58 -0.0 329,293 - EX28DRAFT_0359 0.58 -2.2 329,293 - EX28DRAFT_0359 0.58 -0.4 329,453 + EX28DRAFT_0359 0.64 -0.1 329,477 + EX28DRAFT_0359 0.65 -0.9 329,691 + EX28DRAFT_0359 0.73 -1.5 329,692 - EX28DRAFT_0359 0.73 -1.5 329,765 + EX28DRAFT_0359 0.76 -0.2 329,771 - EX28DRAFT_0359 0.76 +0.3 329,965 + EX28DRAFT_0359 0.84 -0.1 329,966 - EX28DRAFT_0359 0.84 +0.2 329,968 + EX28DRAFT_0359 0.84 +0.6 329,969 - EX28DRAFT_0359 0.84 +0.3 329,969 - EX28DRAFT_0359 0.84 -0.6 330,014 - EX28DRAFT_0359 0.85 +0.1 330,069 - EX28DRAFT_0359 0.87 -0.5 330,106 + EX28DRAFT_0359 0.89 +0.1 330,107 - EX28DRAFT_0359 0.89 -0.7 330,174 - +2.8 330,209 + -2.2 330,213 + -0.2 330,213 + -0.0 330,213 + -1.1 330,213 + +0.2 330,214 - -0.1 330,214 - +0.2 330,253 + +0.3 330,253 + +0.1 330,260 + -0.1 330,292 - -0.2 330,292 - +0.4 330,292 - -0.4 330,387 - -0.5 330,409 - +0.0 330,453 + +0.1 330,453 + -0.2 330,454 - -0.7 330,463 + +0.1 330,463 + -0.0 330,463 + +0.4 330,464 - +0.4 330,464 - -0.2 330,560 - +0.1 330,626 - -2.0 330,804 + EX28DRAFT_0360 0.79 -0.6 330,805 - EX28DRAFT_0360 0.80 -0.9 330,805 - EX28DRAFT_0360 0.80 +0.1 330,805 - EX28DRAFT_0360 0.80 +1.1 330,805 - EX28DRAFT_0360 0.80 +0.6 330,829 + +0.2 330,963 - +0.4 331,119 + +1.1 331,121 + -0.2 331,121 + -2.0 331,129 - -0.1 331,129 - -0.3 331,130 + +0.3 331,130 + +0.1 331,130 + +0.4 331,131 - -0.2 331,131 - +0.3 331,131 - +0.2 331,131 - -0.3 331,145 - -0.2 331,156 + -0.3 331,162 - -0.8 331,162 - +0.3 331,162 - +0.5 331,242 + +0.2 331,243 - +0.1 331,274 + EX28DRAFT_0361 0.11 -0.2 331,313 + EX28DRAFT_0361 0.15 +0.2 331,313 + EX28DRAFT_0361 0.15 +0.7 331,313 + EX28DRAFT_0361 0.15 -0.3 331,313 + EX28DRAFT_0361 0.15 -0.9 331,314 - EX28DRAFT_0361 0.15 +0.3
Or see this region's nucleotide sequence