Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0310

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0309 and EX28DRAFT_0310 overlap by 4 nucleotidesEX28DRAFT_0310 and EX28DRAFT_0311 overlap by 8 nucleotides EX28DRAFT_0309: EX28DRAFT_0309 - Uncharacterized protein conserved in bacteria, at 267,504 to 268,895 _0309 EX28DRAFT_0310: EX28DRAFT_0310 - Transketolase, N-terminal subunit, at 268,892 to 269,722 _0310 EX28DRAFT_0311: EX28DRAFT_0311 - Transketolase, C-terminal subunit, at 269,715 to 270,668 _0311 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1at 267.894 kb on + strand, within EX28DRAFT_0309at 267.894 kb on + strand, within EX28DRAFT_0309at 267.894 kb on + strand, within EX28DRAFT_0309at 267.897 kb on - strand, within EX28DRAFT_0309at 268.078 kb on - strand, within EX28DRAFT_0309at 268.206 kb on - strand, within EX28DRAFT_0309at 268.206 kb on - strand, within EX28DRAFT_0309at 268.206 kb on - strand, within EX28DRAFT_0309at 268.209 kb on + strand, within EX28DRAFT_0309at 268.209 kb on + strand, within EX28DRAFT_0309at 268.243 kb on - strand, within EX28DRAFT_0309at 268.243 kb on - strand, within EX28DRAFT_0309at 268.284 kb on + strand, within EX28DRAFT_0309at 268.523 kb on + strand, within EX28DRAFT_0309at 268.524 kb on - strand, within EX28DRAFT_0309at 268.524 kb on - strand, within EX28DRAFT_0309at 268.524 kb on - strand, within EX28DRAFT_0309at 268.909 kb on - strandat 268.987 kb on + strand, within EX28DRAFT_0310at 268.988 kb on - strand, within EX28DRAFT_0310at 268.988 kb on - strand, within EX28DRAFT_0310at 269.111 kb on + strand, within EX28DRAFT_0310at 269.112 kb on - strand, within EX28DRAFT_0310at 269.371 kb on + strand, within EX28DRAFT_0310at 269.770 kb on - strandat 269.903 kb on - strand, within EX28DRAFT_0311at 269.966 kb on + strand, within EX28DRAFT_0311at 269.967 kb on - strand, within EX28DRAFT_0311at 270.011 kb on + strand, within EX28DRAFT_0311at 270.011 kb on + strand, within EX28DRAFT_0311at 270.024 kb on + strand, within EX28DRAFT_0311at 270.046 kb on + strand, within EX28DRAFT_0311at 270.047 kb on - strand, within EX28DRAFT_0311at 270.095 kb on + strand, within EX28DRAFT_0311at 270.096 kb on - strand, within EX28DRAFT_0311at 270.213 kb on + strand, within EX28DRAFT_0311at 270.312 kb on - strand, within EX28DRAFT_0311at 270.314 kb on - strand, within EX28DRAFT_0311at 270.314 kb on - strand, within EX28DRAFT_0311at 270.447 kb on + strand, within EX28DRAFT_0311at 270.491 kb on + strand, within EX28DRAFT_0311at 270.492 kb on - strand, within EX28DRAFT_0311

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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267,894 + EX28DRAFT_0309 0.28 +0.5
267,894 + EX28DRAFT_0309 0.28 -2.4
267,894 + EX28DRAFT_0309 0.28 -0.0
267,897 - EX28DRAFT_0309 0.28 -0.3
268,078 - EX28DRAFT_0309 0.41 -0.0
268,206 - EX28DRAFT_0309 0.50 -0.8
268,206 - EX28DRAFT_0309 0.50 +0.2
268,206 - EX28DRAFT_0309 0.50 -1.3
268,209 + EX28DRAFT_0309 0.51 -0.6
268,209 + EX28DRAFT_0309 0.51 -0.5
268,243 - EX28DRAFT_0309 0.53 -0.8
268,243 - EX28DRAFT_0309 0.53 +0.3
268,284 + EX28DRAFT_0309 0.56 +0.4
268,523 + EX28DRAFT_0309 0.73 -0.6
268,524 - EX28DRAFT_0309 0.73 +0.1
268,524 - EX28DRAFT_0309 0.73 -0.0
268,524 - EX28DRAFT_0309 0.73 +0.9
268,909 - +0.3
268,987 + EX28DRAFT_0310 0.11 -1.3
268,988 - EX28DRAFT_0310 0.12 -0.1
268,988 - EX28DRAFT_0310 0.12 +0.0
269,111 + EX28DRAFT_0310 0.26 +0.0
269,112 - EX28DRAFT_0310 0.26 -1.7
269,371 + EX28DRAFT_0310 0.58 +1.4
269,770 - -2.2
269,903 - EX28DRAFT_0311 0.20 -0.2
269,966 + EX28DRAFT_0311 0.26 +0.7
269,967 - EX28DRAFT_0311 0.26 +0.0
270,011 + EX28DRAFT_0311 0.31 -0.7
270,011 + EX28DRAFT_0311 0.31 -0.1
270,024 + EX28DRAFT_0311 0.32 +0.9
270,046 + EX28DRAFT_0311 0.35 +0.0
270,047 - EX28DRAFT_0311 0.35 -0.5
270,095 + EX28DRAFT_0311 0.40 -0.0
270,096 - EX28DRAFT_0311 0.40 -0.7
270,213 + EX28DRAFT_0311 0.52 +0.3
270,312 - EX28DRAFT_0311 0.63 -0.3
270,314 - EX28DRAFT_0311 0.63 +0.2
270,314 - EX28DRAFT_0311 0.63 -0.2
270,447 + EX28DRAFT_0311 0.77 +0.8
270,491 + EX28DRAFT_0311 0.81 +0.4
270,492 - EX28DRAFT_0311 0.81 +0.3

Or see this region's nucleotide sequence