Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0276 and EX28DRAFT_0277 overlap by 1 nucleotides EX28DRAFT_0277 and EX28DRAFT_0278 overlap by 1 nucleotides EX28DRAFT_0278 and EX28DRAFT_0279 are separated by 13 nucleotides EX28DRAFT_0279 and EX28DRAFT_0280 are separated by 57 nucleotides
EX28DRAFT_0276: EX28DRAFT_0276 - Murein endopeptidase, at 238,272 to 239,096
_0276
EX28DRAFT_0277: EX28DRAFT_0277 - Predicted permeases, at 239,096 to 239,905
_0277
EX28DRAFT_0278: EX28DRAFT_0278 - Uncharacterized protein conserved in bacteria, at 239,905 to 240,450
_0278
EX28DRAFT_0279: EX28DRAFT_0279 - YfcL protein, at 240,464 to 240,742
_0279
EX28DRAFT_0280: EX28DRAFT_0280 - tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain, at 240,800 to 242,797
_0280
Position (kb) 239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.089 kb on + strand at 239.095 kb on - strand at 239.120 kb on - strand at 239.176 kb on + strand at 239.306 kb on + strand, within EX28DRAFT_0277 at 239.320 kb on + strand, within EX28DRAFT_0277 at 239.462 kb on + strand, within EX28DRAFT_0277 at 239.806 kb on + strand, within EX28DRAFT_0277 at 239.903 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.924 kb on - strand at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.036 kb on + strand, within EX28DRAFT_0278 at 240.065 kb on - strand, within EX28DRAFT_0278 at 240.394 kb on + strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.395 kb on - strand, within EX28DRAFT_0278 at 240.398 kb on - strand at 240.448 kb on + strand at 240.740 kb on + strand at 240.741 kb on - strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.970 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.972 kb on + strand at 240.973 kb on - strand at 240.973 kb on - strand at 240.973 kb on - strand at 241.033 kb on - strand, within EX28DRAFT_0280 at 241.240 kb on - strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.285 kb on + strand, within EX28DRAFT_0280 at 241.286 kb on - strand, within EX28DRAFT_0280 at 241.299 kb on + strand, within EX28DRAFT_0280 at 241.345 kb on + strand, within EX28DRAFT_0280 at 241.352 kb on + strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280 at 241.353 kb on - strand, within EX28DRAFT_0280
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 239,089 + +0.0 239,095 - +0.1 239,120 - +0.2 239,176 + +0.4 239,306 + EX28DRAFT_0277 0.26 -0.1 239,320 + EX28DRAFT_0277 0.28 -0.1 239,462 + EX28DRAFT_0277 0.45 -0.5 239,806 + EX28DRAFT_0277 0.88 +0.0 239,903 + -0.2 239,913 + +0.5 239,913 + +2.3 239,913 + -0.1 239,924 - +0.2 240,007 + EX28DRAFT_0278 0.19 -0.3 240,007 + EX28DRAFT_0278 0.19 +0.4 240,034 + EX28DRAFT_0278 0.24 +0.1 240,034 + EX28DRAFT_0278 0.24 +0.2 240,034 + EX28DRAFT_0278 0.24 +0.9 240,036 + EX28DRAFT_0278 0.24 +0.4 240,065 - EX28DRAFT_0278 0.29 +0.3 240,394 + EX28DRAFT_0278 0.90 -0.1 240,395 - EX28DRAFT_0278 0.90 +0.7 240,395 - EX28DRAFT_0278 0.90 +0.2 240,398 - -0.2 240,448 + -1.0 240,740 + -0.2 240,741 - +0.9 240,970 + +0.3 240,970 + -0.0 240,970 + +0.5 240,972 + -0.0 240,972 + -0.6 240,972 + -1.0 240,973 - -2.1 240,973 - +1.3 240,973 - -0.7 241,033 - EX28DRAFT_0280 0.12 +0.4 241,240 - EX28DRAFT_0280 0.22 +0.1 241,285 + EX28DRAFT_0280 0.24 +0.2 241,285 + EX28DRAFT_0280 0.24 +1.1 241,286 - EX28DRAFT_0280 0.24 -0.3 241,299 + EX28DRAFT_0280 0.25 -0.7 241,345 + EX28DRAFT_0280 0.27 +0.4 241,352 + EX28DRAFT_0280 0.28 -0.4 241,353 - EX28DRAFT_0280 0.28 -0.7 241,353 - EX28DRAFT_0280 0.28 +0.7
Or see this region's nucleotide sequence