Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0264

Experiment: MS_media no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0262 and EX28DRAFT_0263 are separated by 14 nucleotidesEX28DRAFT_0263 and EX28DRAFT_0264 are separated by 123 nucleotidesEX28DRAFT_0264 and EX28DRAFT_0265 are separated by 49 nucleotidesEX28DRAFT_0265 and EX28DRAFT_0266 are separated by 75 nucleotides EX28DRAFT_0262: EX28DRAFT_0262 - type VI secretion system lysozyme-like protein, at 224,426 to 224,881 _0262 EX28DRAFT_0263: EX28DRAFT_0263 - hypothetical protein, at 224,896 to 225,345 _0263 EX28DRAFT_0264: EX28DRAFT_0264 - ImpA-related N-terminal/ImpA domain protein, at 225,469 to 226,800 _0264 EX28DRAFT_0265: EX28DRAFT_0265 - tRNA, at 226,850 to 226,921 _0265 EX28DRAFT_0266: EX28DRAFT_0266 - Formate/nitrite family of transporters, at 226,997 to 227,926 _0266 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2at 224.497 kb on + strand, within EX28DRAFT_0262at 224.545 kb on + strand, within EX28DRAFT_0262at 224.709 kb on + strand, within EX28DRAFT_0262at 224.710 kb on - strand, within EX28DRAFT_0262at 224.754 kb on - strand, within EX28DRAFT_0262at 224.809 kb on + strand, within EX28DRAFT_0262at 224.875 kb on + strandat 224.875 kb on + strandat 224.878 kb on - strandat 224.880 kb on - strandat 224.880 kb on - strandat 224.889 kb on + strandat 224.961 kb on + strand, within EX28DRAFT_0263at 225.073 kb on + strand, within EX28DRAFT_0263at 225.073 kb on + strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.074 kb on - strand, within EX28DRAFT_0263at 225.112 kb on - strand, within EX28DRAFT_0263at 225.112 kb on - strand, within EX28DRAFT_0263at 225.156 kb on + strand, within EX28DRAFT_0263at 225.266 kb on + strand, within EX28DRAFT_0263at 225.267 kb on - strand, within EX28DRAFT_0263at 225.295 kb on - strand, within EX28DRAFT_0263at 225.299 kb on + strand, within EX28DRAFT_0263at 225.299 kb on + strand, within EX28DRAFT_0263at 225.300 kb on - strand, within EX28DRAFT_0263at 225.318 kb on - strandat 225.318 kb on - strandat 225.370 kb on - strandat 225.370 kb on - strandat 225.384 kb on + strandat 225.384 kb on + strandat 225.388 kb on - strandat 225.419 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.480 kb on + strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.481 kb on - strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.482 kb on + strandat 225.511 kb on - strandat 225.555 kb on + strandat 225.555 kb on + strandat 225.555 kb on + strandat 225.556 kb on - strandat 225.556 kb on - strandat 225.556 kb on - strandat 225.589 kb on + strandat 225.656 kb on - strand, within EX28DRAFT_0264at 225.823 kb on - strand, within EX28DRAFT_0264at 225.876 kb on - strand, within EX28DRAFT_0264at 225.879 kb on + strand, within EX28DRAFT_0264at 225.879 kb on + strand, within EX28DRAFT_0264at 225.950 kb on + strand, within EX28DRAFT_0264at 225.951 kb on - strand, within EX28DRAFT_0264at 225.953 kb on + strand, within EX28DRAFT_0264at 225.954 kb on - strand, within EX28DRAFT_0264at 225.954 kb on - strand, within EX28DRAFT_0264at 225.954 kb on - strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.189 kb on - strand, within EX28DRAFT_0264at 226.317 kb on + strand, within EX28DRAFT_0264at 226.399 kb on + strand, within EX28DRAFT_0264at 226.415 kb on + strand, within EX28DRAFT_0264at 226.434 kb on - strand, within EX28DRAFT_0264at 226.523 kb on - strand, within EX28DRAFT_0264at 226.611 kb on + strand, within EX28DRAFT_0264at 226.611 kb on + strand, within EX28DRAFT_0264at 226.634 kb on + strand, within EX28DRAFT_0264at 226.635 kb on - strand, within EX28DRAFT_0264at 226.747 kb on - strandat 226.747 kb on - strandat 226.765 kb on + strandat 226.775 kb on + strandat 226.899 kb on + strand, within EX28DRAFT_0265at 227.021 kb on - strandat 227.042 kb on - strandat 227.107 kb on + strand, within EX28DRAFT_0266at 227.183 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.267 kb on + strand, within EX28DRAFT_0266at 227.267 kb on + strand, within EX28DRAFT_0266at 227.268 kb on - strand, within EX28DRAFT_0266at 227.382 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.476 kb on + strand, within EX28DRAFT_0266at 227.608 kb on + strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.657 kb on + strand, within EX28DRAFT_0266at 227.658 kb on - strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.789 kb on - strand, within EX28DRAFT_0266

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
remove
224,497 + EX28DRAFT_0262 0.16 -0.3
224,545 + EX28DRAFT_0262 0.26 +0.4
224,709 + EX28DRAFT_0262 0.62 +1.0
224,710 - EX28DRAFT_0262 0.62 +0.8
224,754 - EX28DRAFT_0262 0.72 +0.1
224,809 + EX28DRAFT_0262 0.84 +0.4
224,875 + +0.1
224,875 + +0.2
224,878 - -0.0
224,880 - -0.2
224,880 - +0.4
224,889 + -0.2
224,961 + EX28DRAFT_0263 0.14 +0.2
225,073 + EX28DRAFT_0263 0.39 +0.2
225,073 + EX28DRAFT_0263 0.39 -0.1
225,074 - EX28DRAFT_0263 0.40 +1.4
225,074 - EX28DRAFT_0263 0.40 +0.2
225,074 - EX28DRAFT_0263 0.40 -2.6
225,074 - EX28DRAFT_0263 0.40 -0.4
225,112 - EX28DRAFT_0263 0.48 +0.5
225,112 - EX28DRAFT_0263 0.48 +0.5
225,156 + EX28DRAFT_0263 0.58 -0.4
225,266 + EX28DRAFT_0263 0.82 +0.6
225,267 - EX28DRAFT_0263 0.82 +0.2
225,295 - EX28DRAFT_0263 0.89 -0.2
225,299 + EX28DRAFT_0263 0.90 -0.0
225,299 + EX28DRAFT_0263 0.90 -0.4
225,300 - EX28DRAFT_0263 0.90 +1.0
225,318 - +0.2
225,318 - +0.2
225,370 - -0.2
225,370 - -0.0
225,384 + -0.4
225,384 + -0.8
225,388 - -0.3
225,419 + +0.3
225,480 + -0.7
225,480 + -0.5
225,480 + -1.5
225,480 + -1.4
225,480 + -0.5
225,480 + +0.4
225,480 + +0.7
225,480 + +0.2
225,480 + +0.3
225,481 - +0.0
225,481 - -0.2
225,481 - -0.1
225,481 - +0.3
225,481 - +0.9
225,481 - +0.4
225,481 - -0.1
225,482 + -0.4
225,482 + -1.2
225,482 + +0.8
225,482 + +0.3
225,511 - -0.8
225,555 + +0.8
225,555 + -0.1
225,555 + -0.5
225,556 - +0.1
225,556 - +0.5
225,556 - +0.3
225,589 + -0.3
225,656 - EX28DRAFT_0264 0.14 -0.0
225,823 - EX28DRAFT_0264 0.27 +0.4
225,876 - EX28DRAFT_0264 0.31 +0.8
225,879 + EX28DRAFT_0264 0.31 -1.6
225,879 + EX28DRAFT_0264 0.31 +0.3
225,950 + EX28DRAFT_0264 0.36 -0.5
225,951 - EX28DRAFT_0264 0.36 -0.5
225,953 + EX28DRAFT_0264 0.36 +0.8
225,954 - EX28DRAFT_0264 0.36 +0.2
225,954 - EX28DRAFT_0264 0.36 -0.3
225,954 - EX28DRAFT_0264 0.36 -0.9
226,075 + EX28DRAFT_0264 0.45 +0.2
226,075 + EX28DRAFT_0264 0.45 +0.1
226,075 + EX28DRAFT_0264 0.45 -0.2
226,075 + EX28DRAFT_0264 0.45 +0.6
226,076 - EX28DRAFT_0264 0.46 +0.6
226,076 - EX28DRAFT_0264 0.46 -0.1
226,076 - EX28DRAFT_0264 0.46 -0.3
226,076 - EX28DRAFT_0264 0.46 -0.2
226,189 - EX28DRAFT_0264 0.54 +0.4
226,317 + EX28DRAFT_0264 0.64 +2.3
226,399 + EX28DRAFT_0264 0.70 +0.3
226,415 + EX28DRAFT_0264 0.71 -0.5
226,434 - EX28DRAFT_0264 0.72 +1.1
226,523 - EX28DRAFT_0264 0.79 +0.4
226,611 + EX28DRAFT_0264 0.86 +0.1
226,611 + EX28DRAFT_0264 0.86 +1.1
226,634 + EX28DRAFT_0264 0.87 -0.3
226,635 - EX28DRAFT_0264 0.88 +0.1
226,747 - +0.9
226,747 - +0.8
226,765 + +0.3
226,775 + -0.2
226,899 + EX28DRAFT_0265 0.68 -0.9
227,021 - -0.4
227,042 - +0.0
227,107 + EX28DRAFT_0266 0.12 +0.4
227,183 - EX28DRAFT_0266 0.20 -0.2
227,228 - EX28DRAFT_0266 0.25 +0.2
227,228 - EX28DRAFT_0266 0.25 +1.6
227,228 - EX28DRAFT_0266 0.25 +0.2
227,228 - EX28DRAFT_0266 0.25 -0.3
227,228 - EX28DRAFT_0266 0.25 +0.2
227,267 + EX28DRAFT_0266 0.29 -0.3
227,267 + EX28DRAFT_0266 0.29 +1.2
227,268 - EX28DRAFT_0266 0.29 +0.6
227,382 - EX28DRAFT_0266 0.41 -0.2
227,440 - EX28DRAFT_0266 0.48 -0.4
227,440 - EX28DRAFT_0266 0.48 +0.2
227,440 - EX28DRAFT_0266 0.48 +0.4
227,476 + EX28DRAFT_0266 0.52 +1.9
227,608 + EX28DRAFT_0266 0.66 -0.0
227,609 - EX28DRAFT_0266 0.66 -0.4
227,609 - EX28DRAFT_0266 0.66 -0.1
227,657 + EX28DRAFT_0266 0.71 +1.2
227,658 - EX28DRAFT_0266 0.71 +0.2
227,786 + EX28DRAFT_0266 0.85 +0.6
227,786 + EX28DRAFT_0266 0.85 -0.1
227,787 - EX28DRAFT_0266 0.85 -0.3
227,787 - EX28DRAFT_0266 0.85 +1.6
227,788 + EX28DRAFT_0266 0.85 -0.1
227,788 + EX28DRAFT_0266 0.85 +0.2
227,789 - EX28DRAFT_0266 0.85 -1.2

Or see this region's nucleotide sequence