Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0259

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0258 and EX28DRAFT_0259 are separated by 42 nucleotidesEX28DRAFT_0259 and EX28DRAFT_0260 overlap by 37 nucleotides EX28DRAFT_0258: EX28DRAFT_0258 - type VI secretion-associated protein, VC_A0119 family, at 219,456 to 221,057 _0258 EX28DRAFT_0259: EX28DRAFT_0259 - type VI secretion protein, VC_A0110 family, at 221,100 to 222,854 _0259 EX28DRAFT_0260: EX28DRAFT_0260 - type VI secretion protein, VC_A0111 family, at 222,818 to 223,903 _0260 Position (kb) 221 222 223Strain fitness (log2 ratio) -1 0 1 2 3 4at 220.191 kb on + strand, within EX28DRAFT_0258at 220.372 kb on + strand, within EX28DRAFT_0258at 220.437 kb on + strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.438 kb on - strand, within EX28DRAFT_0258at 220.489 kb on - strand, within EX28DRAFT_0258at 220.613 kb on + strand, within EX28DRAFT_0258at 220.613 kb on + strand, within EX28DRAFT_0258at 221.086 kb on - strandat 221.090 kb on + strandat 221.125 kb on - strandat 221.233 kb on - strandat 221.267 kb on - strandat 221.346 kb on + strand, within EX28DRAFT_0259at 221.346 kb on + strand, within EX28DRAFT_0259at 221.421 kb on - strand, within EX28DRAFT_0259at 221.442 kb on - strand, within EX28DRAFT_0259at 221.579 kb on + strand, within EX28DRAFT_0259at 221.580 kb on - strand, within EX28DRAFT_0259at 221.634 kb on + strand, within EX28DRAFT_0259at 221.635 kb on - strand, within EX28DRAFT_0259at 221.872 kb on + strand, within EX28DRAFT_0259at 222.006 kb on - strand, within EX28DRAFT_0259at 222.006 kb on - strand, within EX28DRAFT_0259at 222.006 kb on - strand, within EX28DRAFT_0259at 222.010 kb on + strand, within EX28DRAFT_0259at 222.011 kb on - strand, within EX28DRAFT_0259at 222.011 kb on - strand, within EX28DRAFT_0259at 222.011 kb on - strand, within EX28DRAFT_0259at 222.144 kb on + strand, within EX28DRAFT_0259at 222.144 kb on + strand, within EX28DRAFT_0259at 222.207 kb on + strand, within EX28DRAFT_0259at 222.207 kb on + strand, within EX28DRAFT_0259at 222.208 kb on - strand, within EX28DRAFT_0259at 222.210 kb on + strand, within EX28DRAFT_0259at 222.252 kb on - strand, within EX28DRAFT_0259at 222.368 kb on + strand, within EX28DRAFT_0259at 222.617 kb on + strand, within EX28DRAFT_0259at 222.617 kb on + strand, within EX28DRAFT_0259at 222.646 kb on - strand, within EX28DRAFT_0259at 222.765 kb on + strandat 222.766 kb on - strandat 222.766 kb on - strandat 222.786 kb on - strandat 222.900 kb on + strandat 222.901 kb on - strandat 222.901 kb on - strandat 223.035 kb on - strand, within EX28DRAFT_0260at 223.082 kb on - strand, within EX28DRAFT_0260at 223.091 kb on + strand, within EX28DRAFT_0260at 223.092 kb on - strand, within EX28DRAFT_0260at 223.121 kb on + strand, within EX28DRAFT_0260at 223.225 kb on + strand, within EX28DRAFT_0260at 223.229 kb on + strand, within EX28DRAFT_0260at 223.229 kb on + strand, within EX28DRAFT_0260at 223.229 kb on + strand, within EX28DRAFT_0260at 223.230 kb on - strand, within EX28DRAFT_0260at 223.528 kb on + strand, within EX28DRAFT_0260at 223.634 kb on + strand, within EX28DRAFT_0260at 223.635 kb on - strand, within EX28DRAFT_0260at 223.635 kb on - strand, within EX28DRAFT_0260at 223.664 kb on + strand, within EX28DRAFT_0260at 223.692 kb on + strand, within EX28DRAFT_0260at 223.820 kb on - strandat 223.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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220,191 + EX28DRAFT_0258 0.46 +0.4
220,372 + EX28DRAFT_0258 0.57 +0.1
220,437 + EX28DRAFT_0258 0.61 -0.3
220,438 - EX28DRAFT_0258 0.61 -0.1
220,438 - EX28DRAFT_0258 0.61 -0.2
220,438 - EX28DRAFT_0258 0.61 -0.7
220,438 - EX28DRAFT_0258 0.61 +0.4
220,489 - EX28DRAFT_0258 0.64 +0.6
220,613 + EX28DRAFT_0258 0.72 +0.7
220,613 + EX28DRAFT_0258 0.72 +0.0
221,086 - -1.1
221,090 + +0.8
221,125 - +0.3
221,233 - -0.4
221,267 - +0.3
221,346 + EX28DRAFT_0259 0.14 -0.3
221,346 + EX28DRAFT_0259 0.14 -1.0
221,421 - EX28DRAFT_0259 0.18 -0.1
221,442 - EX28DRAFT_0259 0.19 -0.4
221,579 + EX28DRAFT_0259 0.27 -0.1
221,580 - EX28DRAFT_0259 0.27 -0.1
221,634 + EX28DRAFT_0259 0.30 +0.2
221,635 - EX28DRAFT_0259 0.30 -1.3
221,872 + EX28DRAFT_0259 0.44 +0.6
222,006 - EX28DRAFT_0259 0.52 -0.2
222,006 - EX28DRAFT_0259 0.52 -0.2
222,006 - EX28DRAFT_0259 0.52 -0.3
222,010 + EX28DRAFT_0259 0.52 -0.1
222,011 - EX28DRAFT_0259 0.52 +1.2
222,011 - EX28DRAFT_0259 0.52 -0.3
222,011 - EX28DRAFT_0259 0.52 +0.7
222,144 + EX28DRAFT_0259 0.59 -0.2
222,144 + EX28DRAFT_0259 0.59 +0.2
222,207 + EX28DRAFT_0259 0.63 +0.1
222,207 + EX28DRAFT_0259 0.63 +0.0
222,208 - EX28DRAFT_0259 0.63 +0.2
222,210 + EX28DRAFT_0259 0.63 +0.4
222,252 - EX28DRAFT_0259 0.66 -0.9
222,368 + EX28DRAFT_0259 0.72 +0.3
222,617 + EX28DRAFT_0259 0.86 +0.1
222,617 + EX28DRAFT_0259 0.86 +0.2
222,646 - EX28DRAFT_0259 0.88 +0.3
222,765 + -0.0
222,766 - -0.6
222,766 - +0.1
222,786 - -0.4
222,900 + -0.0
222,901 - +0.4
222,901 - +3.9
223,035 - EX28DRAFT_0260 0.20 -1.2
223,082 - EX28DRAFT_0260 0.24 +0.5
223,091 + EX28DRAFT_0260 0.25 -0.1
223,092 - EX28DRAFT_0260 0.25 -0.3
223,121 + EX28DRAFT_0260 0.28 +0.1
223,225 + EX28DRAFT_0260 0.37 +0.6
223,229 + EX28DRAFT_0260 0.38 -0.7
223,229 + EX28DRAFT_0260 0.38 -0.3
223,229 + EX28DRAFT_0260 0.38 +0.3
223,230 - EX28DRAFT_0260 0.38 +0.2
223,528 + EX28DRAFT_0260 0.65 +0.3
223,634 + EX28DRAFT_0260 0.75 +0.1
223,635 - EX28DRAFT_0260 0.75 +0.8
223,635 - EX28DRAFT_0260 0.75 +0.2
223,664 + EX28DRAFT_0260 0.78 +0.5
223,692 + EX28DRAFT_0260 0.80 +0.9
223,820 - +0.5
223,839 - -0.1

Or see this region's nucleotide sequence