Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0237 and EX28DRAFT_0238 are separated by 35 nucleotides EX28DRAFT_0238 and EX28DRAFT_0239 are separated by 3 nucleotides EX28DRAFT_0239 and EX28DRAFT_0240 are separated by 386 nucleotides
EX28DRAFT_0237: EX28DRAFT_0237 - glucokinase, proteobacterial type, at 189,288 to 190,253
_0237
EX28DRAFT_0238: EX28DRAFT_0238 - two component transcriptional regulator, LytTR family, at 190,289 to 191,014
_0238
EX28DRAFT_0239: EX28DRAFT_0239 - Putative regulator of cell autolysis, at 191,018 to 192,724
_0239
EX28DRAFT_0240: EX28DRAFT_0240 - Aspartate/tyrosine/aromatic aminotransferase, at 193,111 to 194,349
_0240
Position (kb) 191
192
193 Strain fitness (log2 ratio) -1
0
1 at 190.062 kb on + strand, within EX28DRAFT_0237 at 190.063 kb on - strand, within EX28DRAFT_0237 at 190.065 kb on - strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.156 kb on - strand, within EX28DRAFT_0237 at 190.374 kb on + strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.416 kb on - strand, within EX28DRAFT_0238 at 190.503 kb on + strand, within EX28DRAFT_0238 at 190.504 kb on - strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.558 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.722 kb on + strand, within EX28DRAFT_0238 at 190.786 kb on + strand, within EX28DRAFT_0238 at 190.795 kb on + strand, within EX28DRAFT_0238 at 190.829 kb on + strand, within EX28DRAFT_0238 at 190.856 kb on - strand, within EX28DRAFT_0238 at 190.997 kb on + strand at 190.997 kb on + strand at 190.998 kb on - strand at 190.998 kb on - strand at 191.005 kb on + strand at 191.036 kb on + strand at 191.079 kb on + strand at 191.400 kb on + strand, within EX28DRAFT_0239 at 191.401 kb on - strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.449 kb on - strand, within EX28DRAFT_0239 at 191.464 kb on - strand, within EX28DRAFT_0239 at 191.464 kb on - strand, within EX28DRAFT_0239 at 191.621 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.708 kb on - strand, within EX28DRAFT_0239 at 191.708 kb on - strand, within EX28DRAFT_0239 at 191.916 kb on - strand, within EX28DRAFT_0239 at 191.937 kb on + strand, within EX28DRAFT_0239 at 191.938 kb on - strand, within EX28DRAFT_0239 at 191.962 kb on - strand, within EX28DRAFT_0239 at 191.981 kb on - strand, within EX28DRAFT_0239 at 191.981 kb on - strand, within EX28DRAFT_0239 at 192.528 kb on - strand, within EX28DRAFT_0239 at 192.713 kb on + strand at 192.713 kb on + strand at 192.728 kb on + strand at 192.729 kb on - strand at 192.901 kb on - strand at 192.916 kb on - strand at 193.166 kb on - strand at 193.176 kb on + strand at 193.269 kb on + strand, within EX28DRAFT_0240 at 193.270 kb on - strand, within EX28DRAFT_0240 at 193.292 kb on + strand, within EX28DRAFT_0240 at 193.347 kb on - strand, within EX28DRAFT_0240 at 193.520 kb on - strand, within EX28DRAFT_0240
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 190,062 + EX28DRAFT_0237 0.80 +0.9 190,063 - EX28DRAFT_0237 0.80 -0.0 190,065 - EX28DRAFT_0237 0.80 +0.2 190,155 + EX28DRAFT_0237 0.90 -0.4 190,155 + EX28DRAFT_0237 0.90 +0.0 190,155 + EX28DRAFT_0237 0.90 -1.2 190,156 - EX28DRAFT_0237 0.90 -0.3 190,374 + EX28DRAFT_0238 0.12 -0.7 190,375 - EX28DRAFT_0238 0.12 +0.1 190,375 - EX28DRAFT_0238 0.12 -0.1 190,416 - EX28DRAFT_0238 0.17 +0.6 190,503 + EX28DRAFT_0238 0.29 -0.1 190,504 - EX28DRAFT_0238 0.30 -0.1 190,557 + EX28DRAFT_0238 0.37 +0.9 190,557 + EX28DRAFT_0238 0.37 +0.6 190,558 - EX28DRAFT_0238 0.37 +0.5 190,608 - EX28DRAFT_0238 0.44 +0.8 190,608 - EX28DRAFT_0238 0.44 +0.2 190,608 - EX28DRAFT_0238 0.44 -0.4 190,720 + EX28DRAFT_0238 0.59 +1.5 190,720 + EX28DRAFT_0238 0.59 +0.4 190,722 + EX28DRAFT_0238 0.60 +0.6 190,786 + EX28DRAFT_0238 0.68 -0.1 190,795 + EX28DRAFT_0238 0.70 +0.1 190,829 + EX28DRAFT_0238 0.74 -0.3 190,856 - EX28DRAFT_0238 0.78 +0.7 190,997 + +0.1 190,997 + +1.3 190,998 - +0.4 190,998 - +0.4 191,005 + -0.5 191,036 + +0.6 191,079 + +0.4 191,400 + EX28DRAFT_0239 0.22 -0.3 191,401 - EX28DRAFT_0239 0.22 -0.5 191,448 + EX28DRAFT_0239 0.25 -0.1 191,448 + EX28DRAFT_0239 0.25 +0.4 191,448 + EX28DRAFT_0239 0.25 +0.1 191,449 - EX28DRAFT_0239 0.25 -0.9 191,464 - EX28DRAFT_0239 0.26 +0.1 191,464 - EX28DRAFT_0239 0.26 -1.3 191,621 - EX28DRAFT_0239 0.35 +0.2 191,654 - EX28DRAFT_0239 0.37 +0.1 191,654 - EX28DRAFT_0239 0.37 -0.1 191,654 - EX28DRAFT_0239 0.37 +0.3 191,708 - EX28DRAFT_0239 0.40 +0.2 191,708 - EX28DRAFT_0239 0.40 -0.7 191,916 - EX28DRAFT_0239 0.53 -0.9 191,937 + EX28DRAFT_0239 0.54 +1.1 191,938 - EX28DRAFT_0239 0.54 -0.0 191,962 - EX28DRAFT_0239 0.55 +0.4 191,981 - EX28DRAFT_0239 0.56 -0.7 191,981 - EX28DRAFT_0239 0.56 -1.3 192,528 - EX28DRAFT_0239 0.88 -0.5 192,713 + -0.0 192,713 + +0.4 192,728 + -0.3 192,729 - +0.5 192,901 - +0.3 192,916 - +0.1 193,166 - -0.2 193,176 + +0.7 193,269 + EX28DRAFT_0240 0.13 +0.2 193,270 - EX28DRAFT_0240 0.13 +0.2 193,292 + EX28DRAFT_0240 0.15 -0.1 193,347 - EX28DRAFT_0240 0.19 -0.4 193,520 - EX28DRAFT_0240 0.33 -1.4
Or see this region's nucleotide sequence