Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0099 and EX28DRAFT_0100 are separated by 54 nucleotides EX28DRAFT_0100 and EX28DRAFT_0101 are separated by 149 nucleotides EX28DRAFT_0101 and EX28DRAFT_0102 are separated by 116 nucleotides
EX28DRAFT_0099: EX28DRAFT_0099 - Glycine/serine hydroxymethyltransferase, at 40,286 to 41,539
_0099
EX28DRAFT_0100: EX28DRAFT_0100 - Predicted membrane protein, at 41,594 to 42,016
_0100
EX28DRAFT_0101: EX28DRAFT_0101 - Protein of unknown function (DUF2569), at 42,166 to 42,657
_0101
EX28DRAFT_0102: EX28DRAFT_0102 - Nucleoside H+ symporter, at 42,774 to 43,919
_0102
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.537 kb on + strand at 41.537 kb on + strand at 41.538 kb on - strand at 41.538 kb on - strand at 41.660 kb on - strand, within EX28DRAFT_0100 at 41.660 kb on - strand, within EX28DRAFT_0100 at 41.671 kb on + strand, within EX28DRAFT_0100 at 41.674 kb on - strand, within EX28DRAFT_0100 at 41.680 kb on + strand, within EX28DRAFT_0100 at 41.713 kb on + strand, within EX28DRAFT_0100 at 41.752 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.754 kb on + strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.755 kb on - strand, within EX28DRAFT_0100 at 41.759 kb on + strand, within EX28DRAFT_0100 at 41.759 kb on + strand, within EX28DRAFT_0100 at 41.839 kb on + strand, within EX28DRAFT_0100 at 41.881 kb on + strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.882 kb on - strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.883 kb on + strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.884 kb on - strand, within EX28DRAFT_0100 at 41.889 kb on - strand, within EX28DRAFT_0100 at 42.005 kb on + strand at 42.005 kb on + strand at 42.006 kb on - strand at 42.016 kb on + strand at 42.016 kb on + strand at 42.046 kb on + strand at 42.053 kb on - strand at 42.116 kb on - strand at 42.166 kb on - strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.201 kb on + strand at 42.265 kb on + strand, within EX28DRAFT_0101 at 42.325 kb on + strand, within EX28DRAFT_0101 at 42.326 kb on - strand, within EX28DRAFT_0101 at 42.366 kb on + strand, within EX28DRAFT_0101 at 42.444 kb on + strand, within EX28DRAFT_0101 at 42.485 kb on - strand, within EX28DRAFT_0101 at 42.488 kb on + strand, within EX28DRAFT_0101 at 42.489 kb on - strand, within EX28DRAFT_0101 at 42.504 kb on + strand, within EX28DRAFT_0101 at 42.650 kb on + strand at 42.651 kb on - strand at 42.685 kb on + strand at 42.713 kb on + strand at 42.714 kb on - strand at 42.714 kb on - strand at 42.748 kb on + strand at 42.749 kb on - strand at 42.827 kb on + strand at 42.828 kb on - strand at 43.015 kb on + strand, within EX28DRAFT_0102 at 43.016 kb on - strand, within EX28DRAFT_0102
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 41,537 + -0.7 41,537 + +0.5 41,538 - -0.8 41,538 - -0.3 41,660 - EX28DRAFT_0100 0.16 +0.4 41,660 - EX28DRAFT_0100 0.16 -0.3 41,671 + EX28DRAFT_0100 0.18 -0.3 41,674 - EX28DRAFT_0100 0.19 -0.1 41,680 + EX28DRAFT_0100 0.20 -0.0 41,713 + EX28DRAFT_0100 0.28 -0.2 41,752 + EX28DRAFT_0100 0.37 -0.3 41,754 + EX28DRAFT_0100 0.38 -0.5 41,754 + EX28DRAFT_0100 0.38 -0.0 41,754 + EX28DRAFT_0100 0.38 +0.1 41,754 + EX28DRAFT_0100 0.38 -0.1 41,754 + EX28DRAFT_0100 0.38 -0.0 41,755 - EX28DRAFT_0100 0.38 +0.2 41,755 - EX28DRAFT_0100 0.38 +2.6 41,755 - EX28DRAFT_0100 0.38 +0.4 41,755 - EX28DRAFT_0100 0.38 +0.4 41,759 + EX28DRAFT_0100 0.39 -0.2 41,759 + EX28DRAFT_0100 0.39 -0.9 41,839 + EX28DRAFT_0100 0.58 -1.7 41,881 + EX28DRAFT_0100 0.68 +0.1 41,882 - EX28DRAFT_0100 0.68 -0.6 41,882 - EX28DRAFT_0100 0.68 -0.2 41,882 - EX28DRAFT_0100 0.68 +0.1 41,883 + EX28DRAFT_0100 0.68 -0.8 41,883 + EX28DRAFT_0100 0.68 -0.3 41,883 + EX28DRAFT_0100 0.68 -0.4 41,883 + EX28DRAFT_0100 0.68 -1.9 41,883 + EX28DRAFT_0100 0.68 +0.2 41,884 - EX28DRAFT_0100 0.69 -0.6 41,884 - EX28DRAFT_0100 0.69 +0.1 41,884 - EX28DRAFT_0100 0.69 +1.2 41,889 - EX28DRAFT_0100 0.70 -0.3 42,005 + -1.4 42,005 + +2.1 42,006 - +1.7 42,016 + +0.5 42,016 + +1.0 42,046 + -0.5 42,053 - -0.3 42,116 - -0.1 42,166 - -0.4 42,201 + -0.1 42,201 + -0.1 42,201 + +0.4 42,201 + -0.5 42,265 + EX28DRAFT_0101 0.20 +0.1 42,325 + EX28DRAFT_0101 0.32 -0.1 42,326 - EX28DRAFT_0101 0.33 +0.2 42,366 + EX28DRAFT_0101 0.41 -1.3 42,444 + EX28DRAFT_0101 0.57 +0.3 42,485 - EX28DRAFT_0101 0.65 -0.0 42,488 + EX28DRAFT_0101 0.65 -0.3 42,489 - EX28DRAFT_0101 0.66 -0.5 42,504 + EX28DRAFT_0101 0.69 +0.2 42,650 + +0.6 42,651 - +0.3 42,685 + +0.3 42,713 + -0.5 42,714 - +1.1 42,714 - -0.3 42,748 + +0.7 42,749 - +0.2 42,827 + -0.3 42,828 - +1.0 43,015 + EX28DRAFT_0102 0.21 +0.1 43,016 - EX28DRAFT_0102 0.21 +0.1
Or see this region's nucleotide sequence