Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0069 and EX28DRAFT_0070 are separated by 11 nucleotides EX28DRAFT_0070 and EX28DRAFT_0071 overlap by 16 nucleotides
EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675
_0069
EX28DRAFT_0070: EX28DRAFT_0070 - Predicted O-methyltransferase, at 11,687 to 12,545
_0070
EX28DRAFT_0071: EX28DRAFT_0071 - L-aspartate oxidase (EC 1.4.3.16), at 12,530 to 14,149
_0071
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 11.370 kb on - strand, within EX28DRAFT_0069 at 11.681 kb on - strand at 11.681 kb on - strand at 11.702 kb on + strand at 11.703 kb on - strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.705 kb on - strand at 11.720 kb on - strand at 11.736 kb on + strand at 11.737 kb on - strand at 11.737 kb on - strand at 11.771 kb on + strand at 11.771 kb on + strand at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.949 kb on - strand, within EX28DRAFT_0070 at 12.072 kb on - strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.232 kb on - strand, within EX28DRAFT_0070 at 12.233 kb on + strand, within EX28DRAFT_0070 at 12.252 kb on - strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.507 kb on + strand at 12.539 kb on + strand at 12.539 kb on + strand at 12.543 kb on + strand at 12.543 kb on + strand at 12.544 kb on - strand at 12.604 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.628 kb on + strand at 12.718 kb on - strand, within EX28DRAFT_0071 at 12.720 kb on + strand, within EX28DRAFT_0071 at 12.721 kb on - strand, within EX28DRAFT_0071 at 12.802 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.812 kb on - strand, within EX28DRAFT_0071 at 12.821 kb on + strand, within EX28DRAFT_0071 at 12.821 kb on + strand, within EX28DRAFT_0071 at 12.822 kb on - strand, within EX28DRAFT_0071 at 12.992 kb on - strand, within EX28DRAFT_0071 at 13.017 kb on + strand, within EX28DRAFT_0071 at 13.018 kb on - strand, within EX28DRAFT_0071 at 13.038 kb on + strand, within EX28DRAFT_0071 at 13.039 kb on - strand, within EX28DRAFT_0071 at 13.039 kb on - strand, within EX28DRAFT_0071 at 13.050 kb on - strand, within EX28DRAFT_0071 at 13.057 kb on + strand, within EX28DRAFT_0071 at 13.058 kb on - strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.093 kb on + strand, within EX28DRAFT_0071 at 13.095 kb on + strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.096 kb on - strand, within EX28DRAFT_0071 at 13.133 kb on + strand, within EX28DRAFT_0071 at 13.221 kb on + strand, within EX28DRAFT_0071 at 13.222 kb on - strand, within EX28DRAFT_0071 at 13.512 kb on + strand, within EX28DRAFT_0071 at 13.513 kb on - strand, within EX28DRAFT_0071 at 13.519 kb on - strand, within EX28DRAFT_0071
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 11,370 - EX28DRAFT_0069 0.77 -1.1 11,681 - -0.2 11,681 - -0.6 11,702 + -1.3 11,703 - +0.3 11,704 + +0.1 11,704 + -0.4 11,704 + +0.4 11,705 - +0.6 11,720 - -0.8 11,736 + +0.1 11,737 - +0.2 11,737 - +0.5 11,771 + +0.1 11,771 + -1.4 11,792 - EX28DRAFT_0070 0.12 -0.6 11,792 - EX28DRAFT_0070 0.12 -0.7 11,948 + EX28DRAFT_0070 0.30 -0.2 11,948 + EX28DRAFT_0070 0.30 -0.1 11,949 - EX28DRAFT_0070 0.31 -0.4 12,072 - EX28DRAFT_0070 0.45 -0.7 12,231 + EX28DRAFT_0070 0.63 -0.7 12,231 + EX28DRAFT_0070 0.63 +0.0 12,232 - EX28DRAFT_0070 0.63 -0.0 12,233 + EX28DRAFT_0070 0.64 +0.2 12,252 - EX28DRAFT_0070 0.66 -0.4 12,386 + EX28DRAFT_0070 0.81 +0.1 12,386 + EX28DRAFT_0070 0.81 +1.3 12,507 + +0.3 12,539 + -0.7 12,539 + +0.2 12,543 + +0.1 12,543 + -1.4 12,544 - +0.1 12,604 + -0.3 12,606 + +0.1 12,606 + +0.6 12,606 + -0.4 12,606 + +0.4 12,628 + +0.0 12,718 - EX28DRAFT_0071 0.12 +0.3 12,720 + EX28DRAFT_0071 0.12 +0.3 12,721 - EX28DRAFT_0071 0.12 -0.1 12,802 - EX28DRAFT_0071 0.17 -0.1 12,812 - EX28DRAFT_0071 0.17 -1.8 12,812 - EX28DRAFT_0071 0.17 +0.6 12,812 - EX28DRAFT_0071 0.17 -0.2 12,821 + EX28DRAFT_0071 0.18 +1.2 12,821 + EX28DRAFT_0071 0.18 -0.4 12,822 - EX28DRAFT_0071 0.18 +3.0 12,992 - EX28DRAFT_0071 0.29 -0.1 13,017 + EX28DRAFT_0071 0.30 +0.8 13,018 - EX28DRAFT_0071 0.30 +0.1 13,038 + EX28DRAFT_0071 0.31 +0.0 13,039 - EX28DRAFT_0071 0.31 -0.2 13,039 - EX28DRAFT_0071 0.31 +0.3 13,050 - EX28DRAFT_0071 0.32 +0.3 13,057 + EX28DRAFT_0071 0.33 -0.2 13,058 - EX28DRAFT_0071 0.33 -0.6 13,093 + EX28DRAFT_0071 0.35 -0.5 13,093 + EX28DRAFT_0071 0.35 +1.1 13,093 + EX28DRAFT_0071 0.35 -0.2 13,095 + EX28DRAFT_0071 0.35 +0.4 13,096 - EX28DRAFT_0071 0.35 -0.3 13,096 - EX28DRAFT_0071 0.35 -0.1 13,096 - EX28DRAFT_0071 0.35 +0.3 13,133 + EX28DRAFT_0071 0.37 -0.6 13,221 + EX28DRAFT_0071 0.43 +0.4 13,222 - EX28DRAFT_0071 0.43 +0.5 13,512 + EX28DRAFT_0071 0.61 -0.2 13,513 - EX28DRAFT_0071 0.61 -0.5 13,519 - EX28DRAFT_0071 0.61 -0.7
Or see this region's nucleotide sequence