Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00832 and CCNA_00833 are separated by 138 nucleotides CCNA_00833 and CCNA_03942 are separated by 136 nucleotides CCNA_03942 and CCNA_00834 are separated by 171 nucleotides
CCNA_00832: CCNA_00832 - LysR-family transcriptional regulator, at 897,582 to 898,481
_00832
CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219
_00833
CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490
_03942
CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483
_00834
Position (kb)
899
900 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 898.365 kb on + strand, within CCNA_00832 at 898.386 kb on + strand, within CCNA_00832 at 898.406 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.476 kb on + strand at 898.484 kb on - strand at 898.484 kb on - strand at 898.550 kb on - strand at 898.605 kb on - strand at 898.640 kb on + strand at 898.640 kb on + strand at 898.643 kb on + strand at 898.661 kb on + strand at 898.669 kb on - strand at 898.669 kb on - strand at 898.712 kb on - strand, within CCNA_00833 at 898.712 kb on - strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.805 kb on + strand, within CCNA_00833 at 898.806 kb on + strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.858 kb on - strand, within CCNA_00833 at 899.012 kb on - strand, within CCNA_00833 at 899.041 kb on + strand, within CCNA_00833 at 899.045 kb on + strand, within CCNA_00833 at 899.061 kb on + strand, within CCNA_00833 at 899.065 kb on + strand, within CCNA_00833 at 899.136 kb on + strand, within CCNA_00833 at 899.136 kb on + strand, within CCNA_00833 at 899.136 kb on + strand, within CCNA_00833 at 899.139 kb on - strand, within CCNA_00833 at 899.162 kb on - strand at 899.200 kb on + strand at 899.254 kb on + strand at 899.254 kb on + strand at 899.379 kb on + strand, within CCNA_03942 at 899.394 kb on + strand, within CCNA_03942 at 899.400 kb on - strand, within CCNA_03942 at 899.407 kb on - strand, within CCNA_03942 at 899.417 kb on + strand, within CCNA_03942 at 899.490 kb on + strand at 899.619 kb on + strand at 899.619 kb on + strand at 899.629 kb on + strand at 899.643 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.673 kb on - strand at 899.686 kb on + strand at 899.737 kb on - strand at 899.744 kb on + strand at 899.752 kb on - strand, within CCNA_00834 at 899.790 kb on + strand, within CCNA_00834 at 900.038 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.089 kb on - strand, within CCNA_00834 at 900.102 kb on - strand, within CCNA_00834 at 900.114 kb on + strand, within CCNA_00834 at 900.143 kb on + strand, within CCNA_00834 at 900.147 kb on + strand, within CCNA_00834 at 900.148 kb on + strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.213 kb on + strand, within CCNA_00834 at 900.227 kb on - strand, within CCNA_00834 at 900.251 kb on - strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.396 kb on - strand, within CCNA_00834 at 900.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 898,365 + CCNA_00832 0.87 -0.6 898,386 + CCNA_00832 0.89 +0.1 898,406 + +1.3 898,476 + -1.5 898,476 + -0.7 898,476 + -0.1 898,476 + -0.5 898,476 + +0.5 898,484 - +0.1 898,484 - +0.4 898,550 - +0.0 898,605 - +0.4 898,640 + +0.1 898,640 + +1.0 898,643 + +0.1 898,661 + -0.2 898,669 - -1.0 898,669 - +1.1 898,712 - CCNA_00833 0.15 -1.2 898,712 - CCNA_00833 0.15 -0.8 898,772 + CCNA_00833 0.25 -0.0 898,772 + CCNA_00833 0.25 -0.8 898,772 + CCNA_00833 0.25 -0.3 898,780 - CCNA_00833 0.27 -1.3 898,780 - CCNA_00833 0.27 +0.4 898,780 - CCNA_00833 0.27 +1.8 898,780 - CCNA_00833 0.27 +0.0 898,780 - CCNA_00833 0.27 +0.1 898,805 + CCNA_00833 0.31 +0.6 898,806 + CCNA_00833 0.31 +0.8 898,814 - CCNA_00833 0.32 -2.3 898,814 - CCNA_00833 0.32 -0.8 898,858 - CCNA_00833 0.40 +0.3 899,012 - CCNA_00833 0.65 +0.8 899,041 + CCNA_00833 0.70 -0.2 899,045 + CCNA_00833 0.71 +0.5 899,061 + CCNA_00833 0.73 -0.7 899,065 + CCNA_00833 0.74 -0.4 899,136 + CCNA_00833 0.86 -0.3 899,136 + CCNA_00833 0.86 +0.2 899,136 + CCNA_00833 0.86 -0.5 899,139 - CCNA_00833 0.86 -0.4 899,162 - -0.5 899,200 + -0.2 899,254 + -0.0 899,254 + -0.2 899,379 + CCNA_03942 0.17 -0.7 899,394 + CCNA_03942 0.28 -1.1 899,400 - CCNA_03942 0.33 -0.5 899,407 - CCNA_03942 0.38 -0.6 899,417 + CCNA_03942 0.45 -0.4 899,490 + +0.5 899,619 + -0.6 899,619 + -0.1 899,629 + -0.2 899,643 + -0.1 899,665 + -0.0 899,665 + +0.2 899,665 + +0.1 899,665 + -1.2 899,665 + +0.9 899,665 + +1.4 899,673 - +0.7 899,686 + -0.1 899,737 - -0.2 899,744 + -0.5 899,752 - CCNA_00834 0.11 -0.6 899,790 + CCNA_00834 0.16 +0.7 900,038 - CCNA_00834 0.46 +0.7 900,065 - CCNA_00834 0.49 +0.2 900,089 - CCNA_00834 0.52 -1.5 900,102 - CCNA_00834 0.54 -0.6 900,114 + CCNA_00834 0.55 +0.0 900,143 + CCNA_00834 0.59 +0.4 900,147 + CCNA_00834 0.59 +0.5 900,148 + CCNA_00834 0.59 +0.8 900,156 - CCNA_00834 0.60 -2.4 900,213 + CCNA_00834 0.67 +1.1 900,227 - CCNA_00834 0.69 -0.3 900,251 - CCNA_00834 0.72 -0.6 900,322 + CCNA_00834 0.80 -0.2 900,322 + CCNA_00834 0.80 +0.9 900,322 + CCNA_00834 0.80 +1.9 900,396 - CCNA_00834 0.89 +0.8 900,485 - -0.2
Or see this region's nucleotide sequence