Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03942

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00832 and CCNA_00833 are separated by 138 nucleotidesCCNA_00833 and CCNA_03942 are separated by 136 nucleotidesCCNA_03942 and CCNA_00834 are separated by 171 nucleotides CCNA_00832: CCNA_00832 - LysR-family transcriptional regulator, at 897,582 to 898,481 _00832 CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219 _00833 CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490 _03942 CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483 _00834 Position (kb) 899 900Strain fitness (log2 ratio) -2 -1 0 1 2at 898.365 kb on + strand, within CCNA_00832at 898.386 kb on + strand, within CCNA_00832at 898.406 kb on + strandat 898.476 kb on + strandat 898.476 kb on + strandat 898.476 kb on + strandat 898.476 kb on + strandat 898.476 kb on + strandat 898.484 kb on - strandat 898.484 kb on - strandat 898.550 kb on - strandat 898.605 kb on - strandat 898.640 kb on + strandat 898.640 kb on + strandat 898.643 kb on + strandat 898.661 kb on + strandat 898.669 kb on - strandat 898.669 kb on - strandat 898.712 kb on - strand, within CCNA_00833at 898.712 kb on - strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.805 kb on + strand, within CCNA_00833at 898.806 kb on + strand, within CCNA_00833at 898.814 kb on - strand, within CCNA_00833at 898.814 kb on - strand, within CCNA_00833at 898.858 kb on - strand, within CCNA_00833at 899.012 kb on - strand, within CCNA_00833at 899.041 kb on + strand, within CCNA_00833at 899.045 kb on + strand, within CCNA_00833at 899.061 kb on + strand, within CCNA_00833at 899.065 kb on + strand, within CCNA_00833at 899.136 kb on + strand, within CCNA_00833at 899.136 kb on + strand, within CCNA_00833at 899.136 kb on + strand, within CCNA_00833at 899.139 kb on - strand, within CCNA_00833at 899.162 kb on - strandat 899.200 kb on + strandat 899.254 kb on + strandat 899.254 kb on + strandat 899.379 kb on + strand, within CCNA_03942at 899.394 kb on + strand, within CCNA_03942at 899.400 kb on - strand, within CCNA_03942at 899.407 kb on - strand, within CCNA_03942at 899.417 kb on + strand, within CCNA_03942at 899.490 kb on + strandat 899.619 kb on + strandat 899.619 kb on + strandat 899.629 kb on + strandat 899.643 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.673 kb on - strandat 899.686 kb on + strandat 899.737 kb on - strandat 899.744 kb on + strandat 899.752 kb on - strand, within CCNA_00834at 899.790 kb on + strand, within CCNA_00834at 900.038 kb on - strand, within CCNA_00834at 900.065 kb on - strand, within CCNA_00834at 900.089 kb on - strand, within CCNA_00834at 900.102 kb on - strand, within CCNA_00834at 900.114 kb on + strand, within CCNA_00834at 900.143 kb on + strand, within CCNA_00834at 900.147 kb on + strand, within CCNA_00834at 900.148 kb on + strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.213 kb on + strand, within CCNA_00834at 900.227 kb on - strand, within CCNA_00834at 900.251 kb on - strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.396 kb on - strand, within CCNA_00834at 900.485 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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898,365 + CCNA_00832 0.87 -0.6
898,386 + CCNA_00832 0.89 +0.1
898,406 + +1.3
898,476 + -1.5
898,476 + -0.7
898,476 + -0.1
898,476 + -0.5
898,476 + +0.5
898,484 - +0.1
898,484 - +0.4
898,550 - +0.0
898,605 - +0.4
898,640 + +0.1
898,640 + +1.0
898,643 + +0.1
898,661 + -0.2
898,669 - -1.0
898,669 - +1.1
898,712 - CCNA_00833 0.15 -1.2
898,712 - CCNA_00833 0.15 -0.8
898,772 + CCNA_00833 0.25 -0.0
898,772 + CCNA_00833 0.25 -0.8
898,772 + CCNA_00833 0.25 -0.3
898,780 - CCNA_00833 0.27 -1.3
898,780 - CCNA_00833 0.27 +0.4
898,780 - CCNA_00833 0.27 +1.8
898,780 - CCNA_00833 0.27 +0.0
898,780 - CCNA_00833 0.27 +0.1
898,805 + CCNA_00833 0.31 +0.6
898,806 + CCNA_00833 0.31 +0.8
898,814 - CCNA_00833 0.32 -2.3
898,814 - CCNA_00833 0.32 -0.8
898,858 - CCNA_00833 0.40 +0.3
899,012 - CCNA_00833 0.65 +0.8
899,041 + CCNA_00833 0.70 -0.2
899,045 + CCNA_00833 0.71 +0.5
899,061 + CCNA_00833 0.73 -0.7
899,065 + CCNA_00833 0.74 -0.4
899,136 + CCNA_00833 0.86 -0.3
899,136 + CCNA_00833 0.86 +0.2
899,136 + CCNA_00833 0.86 -0.5
899,139 - CCNA_00833 0.86 -0.4
899,162 - -0.5
899,200 + -0.2
899,254 + -0.0
899,254 + -0.2
899,379 + CCNA_03942 0.17 -0.7
899,394 + CCNA_03942 0.28 -1.1
899,400 - CCNA_03942 0.33 -0.5
899,407 - CCNA_03942 0.38 -0.6
899,417 + CCNA_03942 0.45 -0.4
899,490 + +0.5
899,619 + -0.6
899,619 + -0.1
899,629 + -0.2
899,643 + -0.1
899,665 + -0.0
899,665 + +0.2
899,665 + +0.1
899,665 + -1.2
899,665 + +0.9
899,665 + +1.4
899,673 - +0.7
899,686 + -0.1
899,737 - -0.2
899,744 + -0.5
899,752 - CCNA_00834 0.11 -0.6
899,790 + CCNA_00834 0.16 +0.7
900,038 - CCNA_00834 0.46 +0.7
900,065 - CCNA_00834 0.49 +0.2
900,089 - CCNA_00834 0.52 -1.5
900,102 - CCNA_00834 0.54 -0.6
900,114 + CCNA_00834 0.55 +0.0
900,143 + CCNA_00834 0.59 +0.4
900,147 + CCNA_00834 0.59 +0.5
900,148 + CCNA_00834 0.59 +0.8
900,156 - CCNA_00834 0.60 -2.4
900,213 + CCNA_00834 0.67 +1.1
900,227 - CCNA_00834 0.69 -0.3
900,251 - CCNA_00834 0.72 -0.6
900,322 + CCNA_00834 0.80 -0.2
900,322 + CCNA_00834 0.80 +0.9
900,322 + CCNA_00834 0.80 +1.9
900,396 - CCNA_00834 0.89 +0.8
900,485 - -0.2

Or see this region's nucleotide sequence