Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03916

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00204 and CCNA_00205 are separated by 3 nucleotidesCCNA_00205 and CCNA_03916 overlap by 1 nucleotidesCCNA_03916 and CCNA_00206 overlap by 155 nucleotidesCCNA_00206 and CCNA_00207 overlap by 1 nucleotides CCNA_00204: CCNA_00204 - glutathione-regulated potassium-efflux system protein kefB, at 218,336 to 220,237 _00204 CCNA_00205: CCNA_00205 - NAD(P)H-quinone reductase, at 220,241 to 220,822 _00205 CCNA_03916: CCNA_03916 - hypothetical protein, at 220,822 to 221,085 _03916 CCNA_00206: CCNA_00206 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 220,931 to 221,641 _00206 CCNA_00207: CCNA_00207 - succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 221,641 to 222,282 _00207 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.822 kb on + strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.822 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.828 kb on - strand, within CCNA_00204at 219.829 kb on - strand, within CCNA_00204at 219.843 kb on - strand, within CCNA_00204at 219.843 kb on - strand, within CCNA_00204at 219.867 kb on - strand, within CCNA_00204at 219.883 kb on + strand, within CCNA_00204at 219.886 kb on - strand, within CCNA_00204at 219.908 kb on + strand, within CCNA_00204at 219.911 kb on - strand, within CCNA_00204at 219.913 kb on + strand, within CCNA_00204at 219.915 kb on + strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.921 kb on - strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.941 kb on + strand, within CCNA_00204at 219.944 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.949 kb on - strand, within CCNA_00204at 219.950 kb on - strand, within CCNA_00204at 219.961 kb on + strand, within CCNA_00204at 219.966 kb on + strand, within CCNA_00204at 219.966 kb on + strand, within CCNA_00204at 219.984 kb on - strand, within CCNA_00204at 219.984 kb on - strand, within CCNA_00204at 220.000 kb on - strand, within CCNA_00204at 220.016 kb on - strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.021 kb on + strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.029 kb on - strand, within CCNA_00204at 220.040 kb on + strand, within CCNA_00204at 220.040 kb on - strand, within CCNA_00204at 220.053 kb on + strandat 220.121 kb on - strandat 220.126 kb on - strandat 220.142 kb on + strandat 220.142 kb on + strandat 220.147 kb on + strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.150 kb on - strandat 220.153 kb on + strandat 220.155 kb on - strandat 220.158 kb on + strandat 220.158 kb on + strandat 220.166 kb on - strandat 220.183 kb on - strandat 220.195 kb on - strandat 220.198 kb on + strandat 220.217 kb on - strandat 220.229 kb on - strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.239 kb on + strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.247 kb on - strandat 220.253 kb on - strandat 220.296 kb on + strandat 220.296 kb on + strandat 220.309 kb on + strand, within CCNA_00205at 220.314 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.319 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.320 kb on + strand, within CCNA_00205at 220.327 kb on - strand, within CCNA_00205at 220.327 kb on - strand, within CCNA_00205at 220.364 kb on - strand, within CCNA_00205at 220.387 kb on + strand, within CCNA_00205at 220.387 kb on + strand, within CCNA_00205at 220.406 kb on + strand, within CCNA_00205at 220.446 kb on + strand, within CCNA_00205at 220.448 kb on - strand, within CCNA_00205at 220.455 kb on - strand, within CCNA_00205at 220.457 kb on + strand, within CCNA_00205at 220.491 kb on - strand, within CCNA_00205at 220.493 kb on + strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.501 kb on - strand, within CCNA_00205at 220.541 kb on - strand, within CCNA_00205at 220.546 kb on - strand, within CCNA_00205at 220.554 kb on + strand, within CCNA_00205at 220.562 kb on - strand, within CCNA_00205at 220.578 kb on + strand, within CCNA_00205at 220.584 kb on - strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.595 kb on + strand, within CCNA_00205at 220.603 kb on - strand, within CCNA_00205at 220.641 kb on - strand, within CCNA_00205at 220.703 kb on + strand, within CCNA_00205at 220.711 kb on - strand, within CCNA_00205at 220.726 kb on - strand, within CCNA_00205at 220.768 kb on - strandat 220.768 kb on - strandat 220.796 kb on + strandat 220.806 kb on + strandat 220.814 kb on - strandat 220.819 kb on + strandat 220.819 kb on + strandat 220.929 kb on - strand, within CCNA_03916at 220.942 kb on + strandat 220.943 kb on + strandat 220.958 kb on + strandat 220.958 kb on + strandat 220.966 kb on - strandat 220.966 kb on - strandat 220.966 kb on - strandat 221.053 kb on - strandat 221.067 kb on - strandat 221.074 kb on + strandat 221.075 kb on - strandat 221.109 kb on + strand, within CCNA_00206at 221.124 kb on - strand, within CCNA_00206at 221.160 kb on + strand, within CCNA_00206at 221.184 kb on - strand, within CCNA_00206at 221.194 kb on + strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.202 kb on - strand, within CCNA_00206at 221.241 kb on + strand, within CCNA_00206at 221.245 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.300 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.323 kb on + strand, within CCNA_00206at 221.324 kb on + strand, within CCNA_00206at 221.366 kb on - strand, within CCNA_00206at 221.410 kb on + strand, within CCNA_00206at 221.422 kb on + strand, within CCNA_00206at 221.488 kb on - strand, within CCNA_00206at 221.575 kb on + strandat 221.575 kb on + strandat 221.583 kb on - strandat 221.644 kb on - strandat 221.652 kb on - strandat 221.704 kb on - strandat 221.717 kb on - strand, within CCNA_00207at 221.763 kb on - strand, within CCNA_00207at 221.770 kb on + strand, within CCNA_00207at 221.793 kb on + strand, within CCNA_00207at 221.816 kb on - strand, within CCNA_00207at 221.832 kb on - strand, within CCNA_00207at 221.833 kb on + strand, within CCNA_00207at 221.833 kb on + strand, within CCNA_00207at 221.838 kb on + strand, within CCNA_00207at 221.838 kb on + strand, within CCNA_00207at 221.838 kb on + strand, within CCNA_00207at 221.846 kb on - strand, within CCNA_00207at 221.866 kb on + strand, within CCNA_00207at 221.896 kb on + strand, within CCNA_00207at 221.911 kb on - strand, within CCNA_00207at 221.913 kb on + strand, within CCNA_00207at 221.921 kb on - strand, within CCNA_00207at 221.921 kb on - strand, within CCNA_00207at 221.921 kb on - strand, within CCNA_00207at 221.987 kb on + strand, within CCNA_00207at 222.006 kb on + strand, within CCNA_00207at 222.033 kb on - strand, within CCNA_00207at 222.065 kb on + strand, within CCNA_00207at 222.073 kb on - strand, within CCNA_00207at 222.084 kb on + strand, within CCNA_00207

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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219,822 + CCNA_00204 0.78 -2.6
219,822 - CCNA_00204 0.78 -0.1
219,822 - CCNA_00204 0.78 +0.2
219,828 - CCNA_00204 0.78 -0.0
219,828 - CCNA_00204 0.78 -0.9
219,828 - CCNA_00204 0.78 +0.2
219,828 - CCNA_00204 0.78 +0.4
219,829 - CCNA_00204 0.78 +0.5
219,843 - CCNA_00204 0.79 +0.6
219,843 - CCNA_00204 0.79 +1.2
219,867 - CCNA_00204 0.80 +1.2
219,883 + CCNA_00204 0.81 -0.5
219,886 - CCNA_00204 0.81 -0.0
219,908 + CCNA_00204 0.83 -1.2
219,911 - CCNA_00204 0.83 +0.5
219,913 + CCNA_00204 0.83 -0.2
219,915 + CCNA_00204 0.83 +0.3
219,921 - CCNA_00204 0.83 +0.0
219,921 - CCNA_00204 0.83 +0.3
219,921 - CCNA_00204 0.83 +0.4
219,921 - CCNA_00204 0.83 +0.5
219,941 + CCNA_00204 0.84 -0.5
219,941 + CCNA_00204 0.84 -1.0
219,941 + CCNA_00204 0.84 -0.1
219,941 + CCNA_00204 0.84 +0.2
219,941 + CCNA_00204 0.84 -0.7
219,941 + CCNA_00204 0.84 -0.4
219,941 + CCNA_00204 0.84 +0.7
219,941 + CCNA_00204 0.84 -1.3
219,941 + CCNA_00204 0.84 -0.1
219,941 + CCNA_00204 0.84 -0.1
219,941 + CCNA_00204 0.84 -1.2
219,941 + CCNA_00204 0.84 -0.1
219,941 + CCNA_00204 0.84 +0.5
219,944 - CCNA_00204 0.85 -1.0
219,949 - CCNA_00204 0.85 +0.7
219,949 - CCNA_00204 0.85 +0.4
219,949 - CCNA_00204 0.85 +0.3
219,949 - CCNA_00204 0.85 +1.3
219,949 - CCNA_00204 0.85 -0.7
219,949 - CCNA_00204 0.85 +0.1
219,949 - CCNA_00204 0.85 +0.5
219,949 - CCNA_00204 0.85 +0.2
219,949 - CCNA_00204 0.85 -0.6
219,949 - CCNA_00204 0.85 +0.4
219,949 - CCNA_00204 0.85 -0.8
219,950 - CCNA_00204 0.85 -1.6
219,961 + CCNA_00204 0.85 -0.4
219,966 + CCNA_00204 0.86 -0.6
219,966 + CCNA_00204 0.86 +0.4
219,984 - CCNA_00204 0.87 +0.3
219,984 - CCNA_00204 0.87 -3.3
220,000 - CCNA_00204 0.87 -1.2
220,016 - CCNA_00204 0.88 +2.3
220,021 + CCNA_00204 0.89 +0.3
220,021 + CCNA_00204 0.89 -1.2
220,021 + CCNA_00204 0.89 +0.5
220,021 + CCNA_00204 0.89 -0.4
220,021 + CCNA_00204 0.89 -0.1
220,021 + CCNA_00204 0.89 -0.2
220,021 + CCNA_00204 0.89 -0.5
220,021 + CCNA_00204 0.89 +0.4
220,021 + CCNA_00204 0.89 -0.6
220,021 + CCNA_00204 0.89 +1.0
220,029 - CCNA_00204 0.89 +0.0
220,029 - CCNA_00204 0.89 +0.5
220,029 - CCNA_00204 0.89 +0.9
220,029 - CCNA_00204 0.89 +0.2
220,029 - CCNA_00204 0.89 +0.0
220,040 + CCNA_00204 0.90 -0.8
220,040 - CCNA_00204 0.90 +0.1
220,053 + -0.9
220,121 - -0.4
220,126 - +0.3
220,142 + -0.1
220,142 + -0.1
220,147 + +0.5
220,150 - -0.5
220,150 - +0.9
220,150 - -0.9
220,150 - -1.4
220,150 - -1.8
220,153 + -0.4
220,155 - +0.6
220,158 + +0.0
220,158 + +0.9
220,166 - -0.4
220,183 - +0.5
220,195 - -0.3
220,198 + -0.6
220,217 - -0.2
220,229 - -0.2
220,239 + +0.8
220,239 + -0.2
220,239 + -1.5
220,239 + +0.3
220,239 + +0.6
220,239 + -0.6
220,239 + -0.8
220,247 - -0.6
220,247 - -0.3
220,247 - -0.3
220,247 - +0.7
220,247 - -0.2
220,247 - +2.1
220,253 - -1.0
220,296 + -0.4
220,296 + -0.5
220,309 + CCNA_00205 0.12 -1.0
220,314 + CCNA_00205 0.13 -0.2
220,319 + CCNA_00205 0.13 -0.6
220,319 + CCNA_00205 0.13 -1.2
220,319 + CCNA_00205 0.13 -0.4
220,320 + CCNA_00205 0.14 +0.6
220,320 + CCNA_00205 0.14 -0.7
220,327 - CCNA_00205 0.15 +0.4
220,327 - CCNA_00205 0.15 -0.3
220,364 - CCNA_00205 0.21 +0.3
220,387 + CCNA_00205 0.25 -1.1
220,387 + CCNA_00205 0.25 +1.2
220,406 + CCNA_00205 0.28 -1.5
220,446 + CCNA_00205 0.35 -1.3
220,448 - CCNA_00205 0.36 -0.2
220,455 - CCNA_00205 0.37 +0.7
220,457 + CCNA_00205 0.37 -0.6
220,491 - CCNA_00205 0.43 -1.8
220,493 + CCNA_00205 0.43 +1.6
220,501 - CCNA_00205 0.45 -0.8
220,501 - CCNA_00205 0.45 +0.1
220,501 - CCNA_00205 0.45 -1.9
220,541 - CCNA_00205 0.52 -0.5
220,546 - CCNA_00205 0.52 +0.6
220,554 + CCNA_00205 0.54 +0.3
220,562 - CCNA_00205 0.55 +1.0
220,578 + CCNA_00205 0.58 -0.4
220,584 - CCNA_00205 0.59 -0.1
220,595 + CCNA_00205 0.61 -0.4
220,595 + CCNA_00205 0.61 -0.1
220,603 - CCNA_00205 0.62 -1.3
220,641 - CCNA_00205 0.69 -0.9
220,703 + CCNA_00205 0.79 -2.8
220,711 - CCNA_00205 0.81 -0.1
220,726 - CCNA_00205 0.83 +1.6
220,768 - +0.3
220,768 - -0.8
220,796 + -0.8
220,806 + -0.2
220,814 - +0.5
220,819 + +0.6
220,819 + -1.5
220,929 - CCNA_03916 0.41 -0.4
220,942 + +0.2
220,943 + +0.1
220,958 + -0.1
220,958 + +1.1
220,966 - -0.3
220,966 - +0.1
220,966 - -0.3
221,053 - -1.7
221,067 - -0.6
221,074 + +1.0
221,075 - +0.2
221,109 + CCNA_00206 0.25 +0.1
221,124 - CCNA_00206 0.27 -1.0
221,160 + CCNA_00206 0.32 +1.1
221,184 - CCNA_00206 0.36 +0.5
221,194 + CCNA_00206 0.37 -0.7
221,202 - CCNA_00206 0.38 +0.5
221,202 - CCNA_00206 0.38 +0.2
221,202 - CCNA_00206 0.38 +0.5
221,241 + CCNA_00206 0.44 +0.7
221,245 + CCNA_00206 0.44 -0.7
221,300 + CCNA_00206 0.52 +0.1
221,300 + CCNA_00206 0.52 -0.3
221,323 + CCNA_00206 0.55 +0.5
221,323 + CCNA_00206 0.55 -0.9
221,323 + CCNA_00206 0.55 -0.7
221,324 + CCNA_00206 0.55 +0.8
221,366 - CCNA_00206 0.61 +1.1
221,410 + CCNA_00206 0.67 -0.5
221,422 + CCNA_00206 0.69 +0.3
221,488 - CCNA_00206 0.78 +0.7
221,575 + +0.4
221,575 + -0.7
221,583 - -1.3
221,644 - -0.8
221,652 - -0.8
221,704 - -0.6
221,717 - CCNA_00207 0.12 +0.2
221,763 - CCNA_00207 0.19 +0.2
221,770 + CCNA_00207 0.20 +0.3
221,793 + CCNA_00207 0.24 +0.1
221,816 - CCNA_00207 0.27 -0.6
221,832 - CCNA_00207 0.30 -1.4
221,833 + CCNA_00207 0.30 +0.2
221,833 + CCNA_00207 0.30 -0.6
221,838 + CCNA_00207 0.31 +0.7
221,838 + CCNA_00207 0.31 +0.1
221,838 + CCNA_00207 0.31 -0.4
221,846 - CCNA_00207 0.32 -0.7
221,866 + CCNA_00207 0.35 -0.2
221,896 + CCNA_00207 0.40 -1.1
221,911 - CCNA_00207 0.42 +0.4
221,913 + CCNA_00207 0.42 +0.0
221,921 - CCNA_00207 0.44 +1.5
221,921 - CCNA_00207 0.44 -0.4
221,921 - CCNA_00207 0.44 +0.1
221,987 + CCNA_00207 0.54 -0.3
222,006 + CCNA_00207 0.57 +0.2
222,033 - CCNA_00207 0.61 -0.3
222,065 + CCNA_00207 0.66 -2.6
222,073 - CCNA_00207 0.67 -0.2
222,084 + CCNA_00207 0.69 -0.1

Or see this region's nucleotide sequence