Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03871 and CCNA_03872 are separated by 170 nucleotides CCNA_03872 and CCNA_03873 overlap by 26 nucleotides CCNA_03873 and CCNA_03874 are separated by 126 nucleotides
CCNA_03871: CCNA_03871 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,032,935 to 4,034,791
_03871
CCNA_03872: CCNA_03872 - tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase, at 4,034,962 to 4,036,332
_03872
CCNA_03873: CCNA_03873 - hypothetical protein, at 4,036,307 to 4,036,564
_03873
CCNA_03874: CCNA_03874 - carboxymethylenebutenolidase, at 4,036,691 to 4,037,386
_03874
Position (kb)
4034
4035
4036
4037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4034.592 kb on - strand, within CCNA_03871 at 4034.808 kb on - strand at 4035.068 kb on - strand at 4035.113 kb on + strand, within CCNA_03872 at 4035.172 kb on - strand, within CCNA_03872 at 4035.223 kb on - strand, within CCNA_03872 at 4035.264 kb on - strand, within CCNA_03872 at 4035.272 kb on - strand, within CCNA_03872 at 4035.342 kb on - strand, within CCNA_03872 at 4035.418 kb on - strand, within CCNA_03872 at 4035.437 kb on + strand, within CCNA_03872 at 4035.461 kb on + strand, within CCNA_03872 at 4035.467 kb on + strand, within CCNA_03872 at 4035.493 kb on - strand, within CCNA_03872 at 4035.494 kb on + strand, within CCNA_03872 at 4035.512 kb on + strand, within CCNA_03872 at 4035.527 kb on - strand, within CCNA_03872 at 4035.542 kb on - strand, within CCNA_03872 at 4035.606 kb on - strand, within CCNA_03872 at 4035.735 kb on - strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.738 kb on + strand, within CCNA_03872 at 4035.756 kb on + strand, within CCNA_03872 at 4035.780 kb on + strand, within CCNA_03872 at 4035.817 kb on + strand, within CCNA_03872 at 4035.855 kb on + strand, within CCNA_03872 at 4035.886 kb on - strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.932 kb on + strand, within CCNA_03872 at 4035.942 kb on - strand, within CCNA_03872 at 4036.114 kb on + strand, within CCNA_03872 at 4036.142 kb on + strand, within CCNA_03872 at 4036.158 kb on + strand, within CCNA_03872 at 4036.329 kb on + strand at 4036.331 kb on + strand at 4036.337 kb on - strand, within CCNA_03873 at 4036.467 kb on + strand, within CCNA_03873 at 4036.498 kb on + strand, within CCNA_03873 at 4036.498 kb on + strand, within CCNA_03873 at 4036.508 kb on + strand, within CCNA_03873 at 4036.578 kb on - strand at 4036.592 kb on - strand at 4036.610 kb on - strand at 4036.610 kb on - strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.616 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.621 kb on + strand at 4036.624 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.629 kb on - strand at 4036.657 kb on + strand at 4036.683 kb on - strand at 4036.716 kb on - strand at 4036.750 kb on + strand at 4036.812 kb on - strand, within CCNA_03874 at 4036.841 kb on + strand, within CCNA_03874 at 4036.953 kb on - strand, within CCNA_03874 at 4037.032 kb on + strand, within CCNA_03874 at 4037.042 kb on + strand, within CCNA_03874 at 4037.120 kb on + strand, within CCNA_03874 at 4037.284 kb on + strand, within CCNA_03874 at 4037.287 kb on - strand, within CCNA_03874 at 4037.317 kb on - strand at 4037.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 4,034,592 - CCNA_03871 0.89 -0.3 4,034,808 - -0.0 4,035,068 - -0.1 4,035,113 + CCNA_03872 0.11 +0.4 4,035,172 - CCNA_03872 0.15 -0.2 4,035,223 - CCNA_03872 0.19 -1.4 4,035,264 - CCNA_03872 0.22 -0.6 4,035,272 - CCNA_03872 0.23 -2.0 4,035,342 - CCNA_03872 0.28 -0.3 4,035,418 - CCNA_03872 0.33 +0.9 4,035,437 + CCNA_03872 0.35 -2.7 4,035,461 + CCNA_03872 0.36 -0.7 4,035,467 + CCNA_03872 0.37 -1.1 4,035,493 - CCNA_03872 0.39 -2.0 4,035,494 + CCNA_03872 0.39 -1.5 4,035,512 + CCNA_03872 0.40 -0.4 4,035,527 - CCNA_03872 0.41 +1.0 4,035,542 - CCNA_03872 0.42 +0.4 4,035,606 - CCNA_03872 0.47 -2.4 4,035,735 - CCNA_03872 0.56 -0.9 4,035,738 + CCNA_03872 0.57 -1.3 4,035,738 + CCNA_03872 0.57 +0.2 4,035,738 + CCNA_03872 0.57 +0.1 4,035,756 + CCNA_03872 0.58 +0.9 4,035,780 + CCNA_03872 0.60 -1.3 4,035,817 + CCNA_03872 0.62 -3.2 4,035,855 + CCNA_03872 0.65 -1.6 4,035,886 - CCNA_03872 0.67 -0.8 4,035,932 + CCNA_03872 0.71 -0.4 4,035,932 + CCNA_03872 0.71 -1.5 4,035,932 + CCNA_03872 0.71 +0.4 4,035,942 - CCNA_03872 0.71 +0.6 4,036,114 + CCNA_03872 0.84 -1.6 4,036,142 + CCNA_03872 0.86 +0.1 4,036,158 + CCNA_03872 0.87 -2.6 4,036,329 + -0.4 4,036,331 + -0.4 4,036,337 - CCNA_03873 0.12 +0.8 4,036,467 + CCNA_03873 0.62 +0.1 4,036,498 + CCNA_03873 0.74 -0.3 4,036,498 + CCNA_03873 0.74 -0.0 4,036,508 + CCNA_03873 0.78 -0.4 4,036,578 - +0.3 4,036,592 - +0.0 4,036,610 - +1.2 4,036,610 - -2.3 4,036,616 + +0.2 4,036,616 + -0.9 4,036,616 + +0.3 4,036,616 + +0.2 4,036,621 + +0.4 4,036,621 + -0.9 4,036,621 + -0.6 4,036,621 + +0.5 4,036,621 + -0.3 4,036,621 + -0.1 4,036,621 + +0.7 4,036,621 + -0.3 4,036,621 + -1.2 4,036,621 + +0.3 4,036,621 + +0.4 4,036,621 + +0.3 4,036,624 - -0.3 4,036,629 - -0.3 4,036,629 - -0.2 4,036,629 - -0.4 4,036,629 - +0.4 4,036,629 - +1.8 4,036,629 - +0.9 4,036,629 - +1.0 4,036,629 - -0.1 4,036,629 - +0.2 4,036,629 - -0.1 4,036,657 + +0.2 4,036,683 - -0.1 4,036,716 - +0.4 4,036,750 + +0.7 4,036,812 - CCNA_03874 0.17 -0.1 4,036,841 + CCNA_03874 0.22 +0.8 4,036,953 - CCNA_03874 0.38 +0.2 4,037,032 + CCNA_03874 0.49 +0.1 4,037,042 + CCNA_03874 0.50 +0.2 4,037,120 + CCNA_03874 0.62 -0.4 4,037,284 + CCNA_03874 0.85 -0.2 4,037,287 - CCNA_03874 0.86 -0.0 4,037,317 - -0.1 4,037,325 - +0.2
Or see this region's nucleotide sequence