Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03831 and CCNA_03832 are separated by 16 nucleotides CCNA_03832 and CCNA_03833 are separated by 17 nucleotides CCNA_03833 and CCNA_03834 are separated by 65 nucleotides
CCNA_03831: CCNA_03831 - major facilitator superfamily transporter, at 3,995,750 to 3,997,351
_03831
CCNA_03832: CCNA_03832 - TetR-family transcriptional regulator, at 3,997,368 to 3,997,976
_03832
CCNA_03833: CCNA_03833 - enoyl-(acyl-carrier protein) reductase FabI, at 3,997,994 to 3,998,809
_03833
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
Position (kb)
3997
3998 Strain fitness (log2 ratio)
-2
-1
0
1 at 3996.399 kb on - strand, within CCNA_03831 at 3996.467 kb on + strand, within CCNA_03831 at 3996.468 kb on + strand, within CCNA_03831 at 3996.473 kb on + strand, within CCNA_03831 at 3996.476 kb on - strand, within CCNA_03831 at 3996.559 kb on + strand, within CCNA_03831 at 3996.620 kb on + strand, within CCNA_03831 at 3996.628 kb on - strand, within CCNA_03831 at 3996.642 kb on + strand, within CCNA_03831 at 3996.645 kb on - strand, within CCNA_03831 at 3996.645 kb on - strand, within CCNA_03831 at 3996.679 kb on + strand, within CCNA_03831 at 3996.718 kb on + strand, within CCNA_03831 at 3996.726 kb on - strand, within CCNA_03831 at 3996.729 kb on + strand, within CCNA_03831 at 3996.730 kb on + strand, within CCNA_03831 at 3996.842 kb on - strand, within CCNA_03831 at 3996.844 kb on + strand, within CCNA_03831 at 3996.851 kb on + strand, within CCNA_03831 at 3996.868 kb on + strand, within CCNA_03831 at 3996.868 kb on + strand, within CCNA_03831 at 3996.884 kb on - strand, within CCNA_03831 at 3996.901 kb on + strand, within CCNA_03831 at 3996.987 kb on - strand, within CCNA_03831 at 3996.990 kb on + strand, within CCNA_03831 at 3997.064 kb on - strand, within CCNA_03831 at 3997.103 kb on - strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.106 kb on + strand, within CCNA_03831 at 3997.114 kb on - strand, within CCNA_03831 at 3997.251 kb on + strand at 3997.259 kb on - strand at 3997.312 kb on + strand at 3997.312 kb on + strand at 3997.320 kb on - strand at 3997.360 kb on - strand at 3997.378 kb on + strand at 3997.386 kb on - strand at 3997.386 kb on - strand at 3997.416 kb on - strand at 3997.483 kb on + strand, within CCNA_03832 at 3997.492 kb on + strand, within CCNA_03832 at 3997.500 kb on - strand, within CCNA_03832 at 3997.514 kb on - strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.538 kb on + strand, within CCNA_03832 at 3997.629 kb on + strand, within CCNA_03832 at 3997.797 kb on + strand, within CCNA_03832 at 3997.805 kb on - strand, within CCNA_03832 at 3997.884 kb on + strand, within CCNA_03832 at 3997.892 kb on - strand, within CCNA_03832 at 3997.941 kb on - strand at 3997.958 kb on - strand at 3997.961 kb on + strand at 3997.961 kb on + strand at 3997.976 kb on + strand at 3997.986 kb on + strand at 3997.991 kb on + strand at 3997.992 kb on + strand at 3998.000 kb on - strand at 3998.000 kb on - strand at 3998.831 kb on + strand at 3998.873 kb on + strand at 3998.881 kb on - strand at 3998.901 kb on - strand at 3998.902 kb on - strand at 3998.948 kb on - strand at 3998.969 kb on - strand at 3998.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,996,399 - CCNA_03831 0.41 +0.8 3,996,467 + CCNA_03831 0.45 +0.3 3,996,468 + CCNA_03831 0.45 +1.2 3,996,473 + CCNA_03831 0.45 +0.2 3,996,476 - CCNA_03831 0.45 -0.4 3,996,559 + CCNA_03831 0.50 +0.2 3,996,620 + CCNA_03831 0.54 +0.3 3,996,628 - CCNA_03831 0.55 -1.1 3,996,642 + CCNA_03831 0.56 +0.1 3,996,645 - CCNA_03831 0.56 +0.1 3,996,645 - CCNA_03831 0.56 -1.9 3,996,679 + CCNA_03831 0.58 +0.4 3,996,718 + CCNA_03831 0.60 -0.4 3,996,726 - CCNA_03831 0.61 -0.7 3,996,729 + CCNA_03831 0.61 -0.6 3,996,730 + CCNA_03831 0.61 +0.4 3,996,842 - CCNA_03831 0.68 +0.5 3,996,844 + CCNA_03831 0.68 -0.4 3,996,851 + CCNA_03831 0.69 +0.4 3,996,868 + CCNA_03831 0.70 -0.1 3,996,868 + CCNA_03831 0.70 -0.4 3,996,884 - CCNA_03831 0.71 -0.0 3,996,901 + CCNA_03831 0.72 -0.4 3,996,987 - CCNA_03831 0.77 -0.2 3,996,990 + CCNA_03831 0.77 +0.1 3,997,064 - CCNA_03831 0.82 -1.1 3,997,103 - CCNA_03831 0.84 -0.3 3,997,106 + CCNA_03831 0.85 -0.7 3,997,106 + CCNA_03831 0.85 -0.9 3,997,114 - CCNA_03831 0.85 +0.6 3,997,251 + -0.2 3,997,259 - +0.5 3,997,312 + +0.4 3,997,312 + -0.8 3,997,320 - +0.5 3,997,360 - -0.8 3,997,378 + -0.1 3,997,386 - -1.0 3,997,386 - +0.4 3,997,416 - +0.2 3,997,483 + CCNA_03832 0.19 +0.5 3,997,492 + CCNA_03832 0.20 -0.0 3,997,500 - CCNA_03832 0.22 +0.1 3,997,514 - CCNA_03832 0.24 -1.6 3,997,538 + CCNA_03832 0.28 -0.6 3,997,538 + CCNA_03832 0.28 -0.3 3,997,629 + CCNA_03832 0.43 +0.7 3,997,797 + CCNA_03832 0.70 +0.0 3,997,805 - CCNA_03832 0.72 +0.2 3,997,884 + CCNA_03832 0.85 -0.5 3,997,892 - CCNA_03832 0.86 -2.0 3,997,941 - -0.4 3,997,958 - -0.2 3,997,961 + -0.1 3,997,961 + +0.3 3,997,976 + +0.0 3,997,986 + -0.6 3,997,991 + +0.3 3,997,992 + -0.0 3,998,000 - +0.2 3,998,000 - +0.9 3,998,831 + -0.1 3,998,873 + +0.3 3,998,881 - +0.9 3,998,901 - +0.1 3,998,902 - -0.4 3,998,948 - -0.0 3,998,969 - -0.2 3,998,969 - -0.5
Or see this region's nucleotide sequence