Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03649 and CCNA_03650 overlap by 4 nucleotides CCNA_03650 and CCNA_03651 overlap by 4 nucleotides
CCNA_03649: CCNA_03649 - Ser/Thr kinase-related phosphotransferase, at 3,806,915 to 3,808,006
_03649
CCNA_03650: CCNA_03650 - mannose-1-phosphate guanyltransferase, at 3,808,003 to 3,808,731
_03650
CCNA_03651: CCNA_03651 - ATP-dependent nuclease subunit B, at 3,808,728 to 3,811,718
_03651
Position (kb)
3808
3809 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3807.021 kb on + strand at 3807.029 kb on - strand, within CCNA_03649 at 3807.058 kb on - strand, within CCNA_03649 at 3807.087 kb on - strand, within CCNA_03649 at 3807.211 kb on + strand, within CCNA_03649 at 3807.237 kb on - strand, within CCNA_03649 at 3807.238 kb on - strand, within CCNA_03649 at 3807.262 kb on - strand, within CCNA_03649 at 3807.262 kb on - strand, within CCNA_03649 at 3807.282 kb on - strand, within CCNA_03649 at 3807.282 kb on - strand, within CCNA_03649 at 3807.286 kb on + strand, within CCNA_03649 at 3807.287 kb on + strand, within CCNA_03649 at 3807.301 kb on + strand, within CCNA_03649 at 3807.329 kb on + strand, within CCNA_03649 at 3807.337 kb on - strand, within CCNA_03649 at 3807.399 kb on - strand, within CCNA_03649 at 3807.409 kb on - strand, within CCNA_03649 at 3807.437 kb on + strand, within CCNA_03649 at 3807.439 kb on + strand, within CCNA_03649 at 3807.498 kb on - strand, within CCNA_03649 at 3807.555 kb on - strand, within CCNA_03649 at 3807.573 kb on + strand, within CCNA_03649 at 3807.668 kb on + strand, within CCNA_03649 at 3807.668 kb on + strand, within CCNA_03649 at 3807.676 kb on - strand, within CCNA_03649 at 3807.676 kb on - strand, within CCNA_03649 at 3807.676 kb on - strand, within CCNA_03649 at 3807.744 kb on - strand, within CCNA_03649 at 3807.770 kb on - strand, within CCNA_03649 at 3807.774 kb on + strand, within CCNA_03649 at 3807.779 kb on + strand, within CCNA_03649 at 3807.810 kb on + strand, within CCNA_03649 at 3807.815 kb on - strand, within CCNA_03649 at 3807.886 kb on + strand, within CCNA_03649 at 3807.886 kb on + strand, within CCNA_03649 at 3807.890 kb on - strand, within CCNA_03649 at 3807.910 kb on + strand at 3807.918 kb on - strand at 3807.918 kb on - strand at 3807.929 kb on - strand at 3807.929 kb on - strand at 3807.950 kb on - strand at 3807.950 kb on - strand at 3808.080 kb on + strand, within CCNA_03650 at 3808.080 kb on + strand, within CCNA_03650 at 3808.110 kb on + strand, within CCNA_03650 at 3808.119 kb on - strand, within CCNA_03650 at 3808.181 kb on - strand, within CCNA_03650 at 3808.194 kb on + strand, within CCNA_03650 at 3808.321 kb on + strand, within CCNA_03650 at 3808.385 kb on - strand, within CCNA_03650 at 3808.434 kb on + strand, within CCNA_03650 at 3808.437 kb on - strand, within CCNA_03650 at 3808.485 kb on - strand, within CCNA_03650 at 3808.730 kb on + strand at 3809.226 kb on + strand, within CCNA_03651 at 3809.712 kb on - strand, within CCNA_03651
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,807,021 + -0.0 3,807,029 - CCNA_03649 0.10 +0.9 3,807,058 - CCNA_03649 0.13 -1.5 3,807,087 - CCNA_03649 0.16 -1.3 3,807,211 + CCNA_03649 0.27 -0.6 3,807,237 - CCNA_03649 0.29 -1.4 3,807,238 - CCNA_03649 0.30 -2.7 3,807,262 - CCNA_03649 0.32 -0.1 3,807,262 - CCNA_03649 0.32 -1.5 3,807,282 - CCNA_03649 0.34 -0.3 3,807,282 - CCNA_03649 0.34 -2.2 3,807,286 + CCNA_03649 0.34 +1.5 3,807,287 + CCNA_03649 0.34 -0.0 3,807,301 + CCNA_03649 0.35 +0.3 3,807,329 + CCNA_03649 0.38 +0.5 3,807,337 - CCNA_03649 0.39 +0.4 3,807,399 - CCNA_03649 0.44 -0.6 3,807,409 - CCNA_03649 0.45 -0.1 3,807,437 + CCNA_03649 0.48 +1.0 3,807,439 + CCNA_03649 0.48 -0.1 3,807,498 - CCNA_03649 0.53 +1.2 3,807,555 - CCNA_03649 0.59 -0.2 3,807,573 + CCNA_03649 0.60 +0.1 3,807,668 + CCNA_03649 0.69 -0.9 3,807,668 + CCNA_03649 0.69 -1.1 3,807,676 - CCNA_03649 0.70 +0.5 3,807,676 - CCNA_03649 0.70 -0.5 3,807,676 - CCNA_03649 0.70 -0.7 3,807,744 - CCNA_03649 0.76 -1.2 3,807,770 - CCNA_03649 0.78 -0.5 3,807,774 + CCNA_03649 0.79 +0.4 3,807,779 + CCNA_03649 0.79 +1.1 3,807,810 + CCNA_03649 0.82 -0.5 3,807,815 - CCNA_03649 0.82 -0.0 3,807,886 + CCNA_03649 0.89 +0.2 3,807,886 + CCNA_03649 0.89 -0.7 3,807,890 - CCNA_03649 0.89 -1.6 3,807,910 + +0.6 3,807,918 - -0.8 3,807,918 - -0.1 3,807,929 - -0.4 3,807,929 - -1.5 3,807,950 - +1.8 3,807,950 - -0.3 3,808,080 + CCNA_03650 0.11 -0.9 3,808,080 + CCNA_03650 0.11 -0.5 3,808,110 + CCNA_03650 0.15 -1.2 3,808,119 - CCNA_03650 0.16 -0.7 3,808,181 - CCNA_03650 0.24 +0.1 3,808,194 + CCNA_03650 0.26 -0.3 3,808,321 + CCNA_03650 0.44 -0.1 3,808,385 - CCNA_03650 0.52 +0.1 3,808,434 + CCNA_03650 0.59 +0.5 3,808,437 - CCNA_03650 0.60 -0.1 3,808,485 - CCNA_03650 0.66 -0.1 3,808,730 + -0.4 3,809,226 + CCNA_03651 0.17 -1.5 3,809,712 - CCNA_03651 0.33 -1.0
Or see this region's nucleotide sequence