Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03559

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03557 and CCNA_03558 are separated by 207 nucleotidesCCNA_03558 and CCNA_03559 overlap by 1 nucleotidesCCNA_03559 and CCNA_03560 overlap by 1 nucleotides CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810 _03557 CCNA_03558: CCNA_03558 - ATP synthase epsilon chain, at 3,714,018 to 3,714,278 _03558 CCNA_03559: CCNA_03559 - hypothetical protein, at 3,714,278 to 3,714,529 _03559 CCNA_03560: CCNA_03560 - ATP synthase beta chain, at 3,714,529 to 3,716,148 _03560 Position (kb) 3714 3715Strain fitness (log2 ratio) -1 0 1at 3713.316 kb on - strand, within CCNA_03557at 3713.316 kb on - strand, within CCNA_03557at 3713.326 kb on - strand, within CCNA_03557at 3713.330 kb on + strand, within CCNA_03557at 3713.338 kb on - strand, within CCNA_03557at 3713.338 kb on - strand, within CCNA_03557at 3713.381 kb on + strand, within CCNA_03557at 3713.418 kb on - strand, within CCNA_03557at 3713.524 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.578 kb on + strand, within CCNA_03557at 3713.701 kb on + strand, within CCNA_03557at 3713.706 kb on + strand, within CCNA_03557at 3713.869 kb on - strandat 3713.881 kb on + strandat 3713.991 kb on - strandat 3713.991 kb on - strandat 3714.016 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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3,713,316 - CCNA_03557 0.32 -0.0
3,713,316 - CCNA_03557 0.32 +0.2
3,713,326 - CCNA_03557 0.33 +0.0
3,713,330 + CCNA_03557 0.34 -0.1
3,713,338 - CCNA_03557 0.35 +0.4
3,713,338 - CCNA_03557 0.35 +0.0
3,713,381 + CCNA_03557 0.41 +0.2
3,713,418 - CCNA_03557 0.46 +0.1
3,713,524 - CCNA_03557 0.60 +0.4
3,713,547 - CCNA_03557 0.64 +0.0
3,713,547 - CCNA_03557 0.64 -0.1
3,713,547 - CCNA_03557 0.64 -0.1
3,713,578 + CCNA_03557 0.68 +0.1
3,713,701 + CCNA_03557 0.85 +1.2
3,713,706 + CCNA_03557 0.86 -0.3
3,713,869 - +0.2
3,713,881 + +0.2
3,713,991 - +0.2
3,713,991 - +0.3
3,714,016 + -1.1

Or see this region's nucleotide sequence