Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02933 and CCNA_02934 are separated by 147 nucleotides CCNA_02934 and CCNA_02935 are separated by 129 nucleotides
CCNA_02933: CCNA_02933 - aminopeptidase, at 3,092,264 to 3,093,979
_02933
CCNA_02934: CCNA_02934 - hypothetical protein, at 3,094,127 to 3,094,828
_02934
CCNA_02935: CCNA_02935 - methyl-accepting chemotaxis protein, at 3,094,958 to 3,097,171
_02935
Position (kb)
3094
3095 Strain fitness (log2 ratio)
-2
-1
0
1 at 3093.136 kb on + strand, within CCNA_02933 at 3093.149 kb on + strand, within CCNA_02933 at 3093.155 kb on + strand, within CCNA_02933 at 3093.156 kb on + strand, within CCNA_02933 at 3093.156 kb on + strand, within CCNA_02933 at 3093.156 kb on + strand, within CCNA_02933 at 3093.163 kb on - strand, within CCNA_02933 at 3093.175 kb on + strand, within CCNA_02933 at 3093.175 kb on + strand, within CCNA_02933 at 3093.208 kb on + strand, within CCNA_02933 at 3093.235 kb on + strand, within CCNA_02933 at 3093.251 kb on - strand, within CCNA_02933 at 3093.254 kb on + strand, within CCNA_02933 at 3093.296 kb on - strand, within CCNA_02933 at 3093.306 kb on - strand, within CCNA_02933 at 3093.311 kb on - strand, within CCNA_02933 at 3093.316 kb on + strand, within CCNA_02933 at 3093.355 kb on + strand, within CCNA_02933 at 3093.355 kb on + strand, within CCNA_02933 at 3093.358 kb on - strand, within CCNA_02933 at 3093.375 kb on - strand, within CCNA_02933 at 3093.380 kb on - strand, within CCNA_02933 at 3093.382 kb on + strand, within CCNA_02933 at 3093.382 kb on + strand, within CCNA_02933 at 3093.382 kb on + strand, within CCNA_02933 at 3093.396 kb on - strand, within CCNA_02933 at 3093.399 kb on + strand, within CCNA_02933 at 3093.399 kb on + strand, within CCNA_02933 at 3093.409 kb on + strand, within CCNA_02933 at 3093.409 kb on - strand, within CCNA_02933 at 3093.427 kb on + strand, within CCNA_02933 at 3093.466 kb on + strand, within CCNA_02933 at 3093.500 kb on - strand, within CCNA_02933 at 3093.502 kb on - strand, within CCNA_02933 at 3093.695 kb on + strand, within CCNA_02933 at 3093.769 kb on + strand, within CCNA_02933 at 3093.772 kb on - strand, within CCNA_02933 at 3093.784 kb on + strand, within CCNA_02933 at 3093.824 kb on - strand at 3093.857 kb on + strand at 3093.870 kb on - strand at 3093.876 kb on - strand at 3093.897 kb on - strand at 3093.961 kb on + strand at 3093.987 kb on + strand at 3094.015 kb on - strand at 3094.036 kb on - strand at 3094.047 kb on - strand at 3094.047 kb on - strand at 3094.047 kb on - strand at 3094.047 kb on - strand at 3094.130 kb on + strand at 3094.191 kb on - strand at 3094.314 kb on - strand, within CCNA_02934 at 3094.314 kb on - strand, within CCNA_02934 at 3094.334 kb on + strand, within CCNA_02934 at 3094.403 kb on + strand, within CCNA_02934 at 3094.426 kb on + strand, within CCNA_02934 at 3094.445 kb on + strand, within CCNA_02934 at 3094.455 kb on + strand, within CCNA_02934 at 3094.515 kb on + strand, within CCNA_02934 at 3094.518 kb on - strand, within CCNA_02934 at 3094.542 kb on + strand, within CCNA_02934 at 3094.547 kb on + strand, within CCNA_02934 at 3094.547 kb on + strand, within CCNA_02934 at 3094.555 kb on - strand, within CCNA_02934 at 3094.594 kb on + strand, within CCNA_02934 at 3094.602 kb on - strand, within CCNA_02934 at 3094.632 kb on - strand, within CCNA_02934 at 3094.633 kb on + strand, within CCNA_02934 at 3094.633 kb on + strand, within CCNA_02934 at 3094.634 kb on + strand, within CCNA_02934 at 3094.733 kb on + strand, within CCNA_02934 at 3094.744 kb on + strand, within CCNA_02934 at 3094.744 kb on + strand, within CCNA_02934 at 3094.744 kb on + strand, within CCNA_02934 at 3094.744 kb on + strand, within CCNA_02934 at 3094.789 kb on - strand at 3094.793 kb on + strand at 3094.850 kb on - strand at 3094.857 kb on + strand at 3094.968 kb on - strand at 3094.993 kb on - strand at 3094.998 kb on + strand at 3095.210 kb on + strand, within CCNA_02935 at 3095.216 kb on - strand, within CCNA_02935 at 3095.218 kb on - strand, within CCNA_02935 at 3095.225 kb on + strand, within CCNA_02935 at 3095.247 kb on - strand, within CCNA_02935 at 3095.291 kb on - strand, within CCNA_02935 at 3095.317 kb on + strand, within CCNA_02935 at 3095.325 kb on + strand, within CCNA_02935 at 3095.354 kb on + strand, within CCNA_02935 at 3095.354 kb on + strand, within CCNA_02935 at 3095.390 kb on - strand, within CCNA_02935 at 3095.396 kb on + strand, within CCNA_02935 at 3095.472 kb on - strand, within CCNA_02935 at 3095.507 kb on - strand, within CCNA_02935 at 3095.547 kb on - strand, within CCNA_02935 at 3095.590 kb on + strand, within CCNA_02935 at 3095.643 kb on + strand, within CCNA_02935 at 3095.651 kb on - strand, within CCNA_02935 at 3095.728 kb on - strand, within CCNA_02935 at 3095.746 kb on + strand, within CCNA_02935 at 3095.776 kb on - strand, within CCNA_02935 at 3095.798 kb on - strand, within CCNA_02935
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,093,136 + CCNA_02933 0.51 +0.7 3,093,149 + CCNA_02933 0.52 +0.8 3,093,155 + CCNA_02933 0.52 +0.5 3,093,156 + CCNA_02933 0.52 +0.6 3,093,156 + CCNA_02933 0.52 +0.1 3,093,156 + CCNA_02933 0.52 +0.8 3,093,163 - CCNA_02933 0.52 -0.3 3,093,175 + CCNA_02933 0.53 -0.3 3,093,175 + CCNA_02933 0.53 +0.4 3,093,208 + CCNA_02933 0.55 +1.4 3,093,235 + CCNA_02933 0.57 +0.1 3,093,251 - CCNA_02933 0.58 -1.0 3,093,254 + CCNA_02933 0.58 +0.2 3,093,296 - CCNA_02933 0.60 -1.7 3,093,306 - CCNA_02933 0.61 +0.3 3,093,311 - CCNA_02933 0.61 -0.7 3,093,316 + CCNA_02933 0.61 +0.7 3,093,355 + CCNA_02933 0.64 +0.6 3,093,355 + CCNA_02933 0.64 -0.3 3,093,358 - CCNA_02933 0.64 -1.0 3,093,375 - CCNA_02933 0.65 +0.1 3,093,380 - CCNA_02933 0.65 -0.3 3,093,382 + CCNA_02933 0.65 +1.4 3,093,382 + CCNA_02933 0.65 +0.7 3,093,382 + CCNA_02933 0.65 -0.3 3,093,396 - CCNA_02933 0.66 +0.5 3,093,399 + CCNA_02933 0.66 +0.7 3,093,399 + CCNA_02933 0.66 +0.7 3,093,409 + CCNA_02933 0.67 +0.1 3,093,409 - CCNA_02933 0.67 -0.7 3,093,427 + CCNA_02933 0.68 -0.4 3,093,466 + CCNA_02933 0.70 +0.3 3,093,500 - CCNA_02933 0.72 -0.2 3,093,502 - CCNA_02933 0.72 -0.5 3,093,695 + CCNA_02933 0.83 +0.8 3,093,769 + CCNA_02933 0.88 -0.2 3,093,772 - CCNA_02933 0.88 -0.0 3,093,784 + CCNA_02933 0.89 +0.3 3,093,824 - -0.4 3,093,857 + +1.1 3,093,870 - -0.2 3,093,876 - +0.8 3,093,897 - +0.5 3,093,961 + +0.0 3,093,987 + +0.1 3,094,015 - +0.7 3,094,036 - -0.1 3,094,047 - +0.8 3,094,047 - +0.2 3,094,047 - -0.2 3,094,047 - +0.1 3,094,130 + +1.6 3,094,191 - +0.4 3,094,314 - CCNA_02934 0.27 +0.7 3,094,314 - CCNA_02934 0.27 +0.1 3,094,334 + CCNA_02934 0.29 -0.9 3,094,403 + CCNA_02934 0.39 +0.3 3,094,426 + CCNA_02934 0.43 -1.5 3,094,445 + CCNA_02934 0.45 -1.6 3,094,455 + CCNA_02934 0.47 -0.1 3,094,515 + CCNA_02934 0.55 +0.1 3,094,518 - CCNA_02934 0.56 -1.0 3,094,542 + CCNA_02934 0.59 -0.3 3,094,547 + CCNA_02934 0.60 -0.8 3,094,547 + CCNA_02934 0.60 -0.7 3,094,555 - CCNA_02934 0.61 +0.3 3,094,594 + CCNA_02934 0.67 -1.1 3,094,602 - CCNA_02934 0.68 -2.2 3,094,632 - CCNA_02934 0.72 -1.0 3,094,633 + CCNA_02934 0.72 -0.9 3,094,633 + CCNA_02934 0.72 -0.7 3,094,634 + CCNA_02934 0.72 -0.2 3,094,733 + CCNA_02934 0.86 -1.6 3,094,744 + CCNA_02934 0.88 -1.1 3,094,744 + CCNA_02934 0.88 -1.3 3,094,744 + CCNA_02934 0.88 -0.7 3,094,744 + CCNA_02934 0.88 +0.3 3,094,789 - -0.9 3,094,793 + -0.3 3,094,850 - +0.3 3,094,857 + -0.1 3,094,968 - -0.1 3,094,993 - -0.3 3,094,998 + -0.3 3,095,210 + CCNA_02935 0.11 -0.3 3,095,216 - CCNA_02935 0.12 +0.7 3,095,218 - CCNA_02935 0.12 -0.4 3,095,225 + CCNA_02935 0.12 -0.5 3,095,247 - CCNA_02935 0.13 +0.7 3,095,291 - CCNA_02935 0.15 +0.0 3,095,317 + CCNA_02935 0.16 -0.2 3,095,325 + CCNA_02935 0.17 +0.3 3,095,354 + CCNA_02935 0.18 +0.2 3,095,354 + CCNA_02935 0.18 -0.2 3,095,390 - CCNA_02935 0.20 -0.0 3,095,396 + CCNA_02935 0.20 -0.1 3,095,472 - CCNA_02935 0.23 +0.6 3,095,507 - CCNA_02935 0.25 +1.5 3,095,547 - CCNA_02935 0.27 -0.2 3,095,590 + CCNA_02935 0.29 +0.9 3,095,643 + CCNA_02935 0.31 -0.2 3,095,651 - CCNA_02935 0.31 +0.1 3,095,728 - CCNA_02935 0.35 +0.0 3,095,746 + CCNA_02935 0.36 -0.0 3,095,776 - CCNA_02935 0.37 +0.4 3,095,798 - CCNA_02935 0.38 -0.0
Or see this region's nucleotide sequence