Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02847

Experiment: PYE with CHIR-090 10 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02846 and CCNA_02847 are separated by 179 nucleotidesCCNA_02847 and CCNA_02848 overlap by 4 nucleotides CCNA_02846: CCNA_02846 - DegP/HtrA-family serine protease, at 2,998,630 to 3,000,222 _02846 CCNA_02847: CCNA_02847 - cytochrome c-type biogenesis protein ccmH, at 3,000,402 to 3,000,854 _02847 CCNA_02848: CCNA_02848 - heme chaperone-apocytochrome heme-lyase, at 3,000,851 to 3,002,833 _02848 Position (kb) 3000 3001Strain fitness (log2 ratio) -2 -1 0 1 2at 2999.467 kb on + strand, within CCNA_02846at 2999.482 kb on + strand, within CCNA_02846at 2999.508 kb on + strand, within CCNA_02846at 2999.521 kb on - strand, within CCNA_02846at 2999.566 kb on + strand, within CCNA_02846at 2999.571 kb on + strand, within CCNA_02846at 2999.642 kb on + strand, within CCNA_02846at 2999.650 kb on + strand, within CCNA_02846at 2999.652 kb on - strand, within CCNA_02846at 2999.657 kb on + strand, within CCNA_02846at 2999.657 kb on + strand, within CCNA_02846at 2999.659 kb on - strand, within CCNA_02846at 2999.663 kb on + strand, within CCNA_02846at 2999.677 kb on - strand, within CCNA_02846at 2999.696 kb on - strand, within CCNA_02846at 2999.702 kb on - strand, within CCNA_02846at 2999.714 kb on - strand, within CCNA_02846at 2999.721 kb on + strand, within CCNA_02846at 2999.754 kb on - strand, within CCNA_02846at 2999.756 kb on + strand, within CCNA_02846at 2999.807 kb on - strand, within CCNA_02846at 2999.952 kb on + strand, within CCNA_02846at 2999.952 kb on + strand, within CCNA_02846at 3000.001 kb on - strand, within CCNA_02846at 3000.006 kb on - strand, within CCNA_02846at 3000.006 kb on - strand, within CCNA_02846at 3000.104 kb on + strandat 3000.117 kb on - strandat 3000.164 kb on - strandat 3000.259 kb on + strandat 3000.267 kb on - strandat 3000.267 kb on - strandat 3000.290 kb on + strandat 3000.329 kb on - strandat 3000.329 kb on - strandat 3000.417 kb on - strandat 3000.419 kb on + strandat 3000.634 kb on + strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.642 kb on - strand, within CCNA_02847at 3000.730 kb on + strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.738 kb on - strand, within CCNA_02847at 3000.740 kb on - strand, within CCNA_02847at 3000.836 kb on - strandat 3000.836 kb on - strandat 3000.836 kb on - strandat 3000.846 kb on - strandat 3001.007 kb on + strandat 3001.030 kb on - strandat 3001.345 kb on - strand, within CCNA_02848at 3001.421 kb on - strand, within CCNA_02848at 3001.492 kb on - strand, within CCNA_02848at 3001.697 kb on - strand, within CCNA_02848at 3001.705 kb on - strand, within CCNA_02848

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
remove
2,999,467 + CCNA_02846 0.53 -1.5
2,999,482 + CCNA_02846 0.53 +0.4
2,999,508 + CCNA_02846 0.55 +0.2
2,999,521 - CCNA_02846 0.56 -0.9
2,999,566 + CCNA_02846 0.59 -1.0
2,999,571 + CCNA_02846 0.59 +0.1
2,999,642 + CCNA_02846 0.64 -0.5
2,999,650 + CCNA_02846 0.64 -1.5
2,999,652 - CCNA_02846 0.64 +0.1
2,999,657 + CCNA_02846 0.64 +0.1
2,999,657 + CCNA_02846 0.64 -1.5
2,999,659 - CCNA_02846 0.65 +0.4
2,999,663 + CCNA_02846 0.65 -1.8
2,999,677 - CCNA_02846 0.66 -0.1
2,999,696 - CCNA_02846 0.67 +0.2
2,999,702 - CCNA_02846 0.67 +0.9
2,999,714 - CCNA_02846 0.68 +0.4
2,999,721 + CCNA_02846 0.68 +1.7
2,999,754 - CCNA_02846 0.71 +0.9
2,999,756 + CCNA_02846 0.71 +0.0
2,999,807 - CCNA_02846 0.74 -1.5
2,999,952 + CCNA_02846 0.83 +0.5
2,999,952 + CCNA_02846 0.83 +0.7
3,000,001 - CCNA_02846 0.86 +0.1
3,000,006 - CCNA_02846 0.86 +0.6
3,000,006 - CCNA_02846 0.86 +0.2
3,000,104 + -0.8
3,000,117 - +0.0
3,000,164 - +0.9
3,000,259 + -0.6
3,000,267 - +0.8
3,000,267 - +0.1
3,000,290 + -0.4
3,000,329 - -0.0
3,000,329 - +0.2
3,000,417 - -0.0
3,000,419 + -1.5
3,000,634 + CCNA_02847 0.51 -1.7
3,000,642 - CCNA_02847 0.53 +0.1
3,000,642 - CCNA_02847 0.53 +0.1
3,000,642 - CCNA_02847 0.53 -0.6
3,000,642 - CCNA_02847 0.53 +0.6
3,000,642 - CCNA_02847 0.53 -0.5
3,000,642 - CCNA_02847 0.53 -1.0
3,000,730 + CCNA_02847 0.72 +0.7
3,000,738 - CCNA_02847 0.74 +0.5
3,000,738 - CCNA_02847 0.74 -0.7
3,000,738 - CCNA_02847 0.74 +0.1
3,000,738 - CCNA_02847 0.74 -1.8
3,000,738 - CCNA_02847 0.74 -1.0
3,000,738 - CCNA_02847 0.74 +0.9
3,000,738 - CCNA_02847 0.74 +0.4
3,000,738 - CCNA_02847 0.74 +0.7
3,000,738 - CCNA_02847 0.74 +0.5
3,000,738 - CCNA_02847 0.74 +0.2
3,000,740 - CCNA_02847 0.75 +1.9
3,000,836 - +0.6
3,000,836 - +0.5
3,000,836 - +0.2
3,000,846 - +0.4
3,001,007 + +1.2
3,001,030 - +0.7
3,001,345 - CCNA_02848 0.25 +0.6
3,001,421 - CCNA_02848 0.29 -0.3
3,001,492 - CCNA_02848 0.32 -0.8
3,001,697 - CCNA_02848 0.43 -1.3
3,001,705 - CCNA_02848 0.43 -0.6

Or see this region's nucleotide sequence